data_1AQJ
#
_model_server_result.job_id            Alry18eXq_Q0zdklIqSY-g 
_model_server_result.datetime_utc      '2024-11-04 23:09:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1aqj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    1AQJ 
#
_exptl.entry_id    1AQJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.387 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SINEFUNGIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1AQJ 
_cell.length_a            130.45 
_cell.length_b            142.94 
_cell.length_c            53.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AQJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,D,F 1 1 
A,C,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H23 N7 O5' 
_chem_comp.formula_weight    381.387 
_chem_comp.id                SFG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SINEFUNGIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ADENOSYL-ORNITHINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SFG sing 290 n n 
N HN1 SFG sing 291 n n 
N HN2 SFG sing 292 n n 
CA C SFG sing 293 n n 
CA CB SFG sing 294 n n 
CA HA SFG sing 295 n n 
C O SFG doub 296 n n 
C OXT SFG sing 297 n n 
OXT HXT SFG sing 298 n n 
CB CG SFG sing 299 n n 
CB HB1 SFG sing 300 n n 
CB HB2 SFG sing 301 n n 
CG CD SFG sing 302 n n 
CG HG1 SFG sing 303 n n 
CG HG2 SFG sing 304 n n 
CD NE SFG sing 305 n n 
CD C5' SFG sing 306 n n 
CD HD SFG sing 307 n n 
NE HNE1 SFG sing 308 n n 
NE HNE2 SFG sing 309 n n 
C5' C4' SFG sing 310 n n 
C5' "H5'1" SFG sing 311 n n 
C5' "H5'2" SFG sing 312 n n 
C4' O4' SFG sing 313 n n 
C4' C3' SFG sing 314 n n 
C4' H4' SFG sing 315 n n 
O4' C1' SFG sing 316 n n 
C3' O3' SFG sing 317 n n 
C3' C2' SFG sing 318 n n 
C3' H3' SFG sing 319 n n 
O3' HO3' SFG sing 320 n n 
C2' O2' SFG sing 321 n n 
C2' C1' SFG sing 322 n n 
C2' H2' SFG sing 323 n n 
O2' HO2' SFG sing 324 n n 
C1' N9 SFG sing 325 n n 
C1' H1' SFG sing 326 n n 
N9 C8 SFG sing 327 n y 
N9 C4 SFG sing 328 n y 
C8 N7 SFG doub 329 n y 
C8 H8 SFG sing 330 n n 
N7 C5 SFG sing 331 n y 
C5 C6 SFG sing 332 n y 
C5 C4 SFG doub 333 n y 
C6 N6 SFG sing 334 n n 
C6 N1 SFG doub 335 n y 
N6 HN61 SFG sing 336 n n 
N6 HN62 SFG sing 337 n n 
N1 C2 SFG sing 338 n y 
C2 N3 SFG doub 339 n y 
C2 H2 SFG sing 340 n n 
N3 C4 SFG sing 341 n y 
#
_atom_sites.entry_id                     1AQJ 
_atom_sites.fract_transf_matrix[1][1]    0.007666 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006996 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SFG A 1 500 500 SFG SFG . 
D 2 SFG B 1 500 500 SFG SFG . 
E 3 HOH A 1 501 600 HOH HOH . 
E 3 HOH A 2 502 601 HOH HOH . 
E 3 HOH A 3 503 602 HOH HOH . 
E 3 HOH A 4 504 603 HOH HOH . 
E 3 HOH A 5 505 604 HOH HOH . 
E 3 HOH A 6 506 605 HOH HOH . 
E 3 HOH A 7 507 606 HOH HOH . 
E 3 HOH A 8 508 607 HOH HOH . 
E 3 HOH A 9 509 608 HOH HOH . 
E 3 HOH A 10 510 609 HOH HOH . 
E 3 HOH A 11 511 610 HOH HOH . 
E 3 HOH A 12 512 611 HOH HOH . 
E 3 HOH A 13 513 612 HOH HOH . 
E 3 HOH A 14 514 613 HOH HOH . 
E 3 HOH A 15 515 614 HOH HOH . 
E 3 HOH A 16 516 615 HOH HOH . 
E 3 HOH A 17 517 616 HOH HOH . 
E 3 HOH A 18 518 617 HOH HOH . 
E 3 HOH A 19 519 618 HOH HOH . 
E 3 HOH A 20 520 619 HOH HOH . 
E 3 HOH A 21 521 620 HOH HOH . 
E 3 HOH A 22 522 621 HOH HOH . 
E 3 HOH A 23 523 622 HOH HOH . 
E 3 HOH A 24 524 623 HOH HOH . 
E 3 HOH A 25 525 624 HOH HOH . 
E 3 HOH A 26 526 625 HOH HOH . 
E 3 HOH A 27 527 626 HOH HOH . 
E 3 HOH A 28 528 627 HOH HOH . 
E 3 HOH A 29 529 628 HOH HOH . 
E 3 HOH A 30 530 629 HOH HOH . 
E 3 HOH A 31 531 630 HOH HOH . 
E 3 HOH A 32 532 631 HOH HOH . 
E 3 HOH A 33 533 632 HOH HOH . 
E 3 HOH A 34 534 633 HOH HOH . 
E 3 HOH A 35 535 634 HOH HOH . 
E 3 HOH A 36 536 635 HOH HOH . 
E 3 HOH A 37 537 636 HOH HOH . 
E 3 HOH A 38 538 637 HOH HOH . 
E 3 HOH A 39 539 638 HOH HOH . 
E 3 HOH A 40 540 639 HOH HOH . 
F 3 HOH B 1 501 640 HOH HOH . 
F 3 HOH B 2 502 641 HOH HOH . 
F 3 HOH B 3 503 642 HOH HOH . 
F 3 HOH B 4 504 643 HOH HOH . 
F 3 HOH B 5 505 644 HOH HOH . 
F 3 HOH B 6 506 645 HOH HOH . 
F 3 HOH B 7 507 646 HOH HOH . 
F 3 HOH B 8 508 647 HOH HOH . 
F 3 HOH B 9 509 648 HOH HOH . 
F 3 HOH B 10 510 649 HOH HOH . 
F 3 HOH B 11 511 650 HOH HOH . 
F 3 HOH B 12 512 652 HOH HOH . 
F 3 HOH B 13 513 653 HOH HOH . 
F 3 HOH B 14 514 654 HOH HOH . 
F 3 HOH B 15 515 655 HOH HOH . 
F 3 HOH B 16 516 656 HOH HOH . 
F 3 HOH B 17 517 657 HOH HOH . 
F 3 HOH B 18 518 658 HOH HOH . 
F 3 HOH B 19 519 659 HOH HOH . 
F 3 HOH B 20 520 660 HOH HOH . 
F 3 HOH B 21 521 661 HOH HOH . 
F 3 HOH B 22 522 662 HOH HOH . 
F 3 HOH B 23 523 663 HOH HOH . 
F 3 HOH B 24 524 664 HOH HOH . 
F 3 HOH B 25 525 665 HOH HOH . 
F 3 HOH B 26 526 666 HOH HOH . 
F 3 HOH B 27 527 667 HOH HOH . 
F 3 HOH B 28 528 668 HOH HOH . 
F 3 HOH B 29 529 670 HOH HOH . 
F 3 HOH B 30 530 671 HOH HOH . 
F 3 HOH B 31 531 672 HOH HOH . 
F 3 HOH B 32 532 673 HOH HOH . 
F 3 HOH B 33 533 674 HOH HOH . 
F 3 HOH B 34 534 675 HOH HOH . 
F 3 HOH B 35 535 676 HOH HOH . 
F 3 HOH B 36 536 677 HOH HOH . 
F 3 HOH B 37 537 678 HOH HOH . 
F 3 HOH B 38 538 679 HOH HOH . 
F 3 HOH B 39 539 680 HOH HOH . 
F 3 HOH B 40 540 681 HOH HOH . 
F 3 HOH B 41 541 682 HOH HOH . 
F 3 HOH B 42 542 683 HOH HOH . 
F 3 HOH B 43 543 684 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SFG . . . D 2 6.853 40.335 42.914 1 30.92 ? N SFG 500 B 1 
HETATM 2 C CA SFG . . . D 2 5.85 39.641 42.119 1 29.62 ? CA SFG 500 B 1 
HETATM 3 C C SFG . . . D 2 5.607 40.397 40.805 1 30.06 ? C SFG 500 B 1 
HETATM 4 O O SFG . . . D 2 6.196 41.482 40.631 1 34.88 ? O SFG 500 B 1 
HETATM 5 O OXT SFG . . . D 2 4.84 39.903 39.956 1 33.63 ? OXT SFG 500 B 1 
HETATM 6 C CB SFG . . . D 2 4.546 39.512 42.915 1 26.13 ? CB SFG 500 B 1 
HETATM 7 C CG SFG . . . D 2 3.613 38.444 42.387 1 18.18 ? CG SFG 500 B 1 
HETATM 8 C CD SFG . . . D 2 2.156 38.562 42.842 1 20.39 ? CD SFG 500 B 1 
HETATM 9 N NE SFG . . . D 2 1.987 38.008 44.217 1 15.08 ? NE SFG 500 B 1 
HETATM 10 C C5' SFG . . . D 2 1.323 37.793 41.814 1 18.94 ? C5' SFG 500 B 1 
HETATM 11 C C4' SFG . . . D 2 -0.126 37.439 42.111 1 24.38 ? C4' SFG 500 B 1 
HETATM 12 O O4' SFG . . . D 2 -0.816 38.542 42.735 1 18.16 ? O4' SFG 500 B 1 
HETATM 13 C C3' SFG . . . D 2 -0.865 37.095 40.826 1 25.25 ? C3' SFG 500 B 1 
HETATM 14 O O3' SFG . . . D 2 -1.517 35.823 40.969 1 25.08 ? O3' SFG 500 B 1 
HETATM 15 C C2' SFG . . . D 2 -1.892 38.182 40.666 1 26.37 ? C2' SFG 500 B 1 
HETATM 16 O O2' SFG . . . D 2 -3.117 37.646 40.17 1 38.65 ? O2' SFG 500 B 1 
HETATM 17 C C1' SFG . . . D 2 -2.066 38.741 42.059 1 21.14 ? C1' SFG 500 B 1 
HETATM 18 N N9 SFG . . . D 2 -2.442 40.162 42.027 1 17.12 ? N9 SFG 500 B 1 
HETATM 19 C C8 SFG . . . D 2 -2.081 41.132 41.158 1 16.64 ? C8 SFG 500 B 1 
HETATM 20 N N7 SFG . . . D 2 -2.63 42.289 41.312 1 18.91 ? N7 SFG 500 B 1 
HETATM 21 C C5 SFG . . . D 2 -3.453 42.078 42.412 1 12.48 ? C5 SFG 500 B 1 
HETATM 22 C C6 SFG . . . D 2 -4.398 42.878 43.036 1 17.47 ? C6 SFG 500 B 1 
HETATM 23 N N6 SFG . . . D 2 -4.614 44.136 42.687 1 21.5 ? N6 SFG 500 B 1 
HETATM 24 N N1 SFG . . . D 2 -5.122 42.327 44.025 1 22.67 ? N1 SFG 500 B 1 
HETATM 25 C C2 SFG . . . D 2 -4.905 41.062 44.354 1 19.47 ? C2 SFG 500 B 1 
HETATM 26 N N3 SFG . . . D 2 -4.046 40.202 43.839 1 17.18 ? N3 SFG 500 B 1 
HETATM 27 C C4 SFG . . . D 2 -3.339 40.783 42.858 1 14.92 ? C4 SFG 500 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#