data_1ARS # _model_server_result.job_id WZkLlmPmazIgpwq92qillw _model_server_result.datetime_utc '2025-07-12 23:07:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ars # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":413}' # _entry.id 1ARS # _exptl.entry_id 1ARS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ARS _cell.length_a 155.42 _cell.length_b 87.13 _cell.length_c 79.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ARS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 413 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.373 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 1ARS _atom_sites.fract_transf_matrix[1][1] 0.006434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 413 413 PLP PLP . C 3 HOH A 1 420 420 HOH HOH . C 3 HOH A 2 421 421 HOH HOH . C 3 HOH A 3 422 422 HOH HOH . C 3 HOH A 4 423 423 HOH HOH . C 3 HOH A 5 424 424 HOH HOH . C 3 HOH A 6 425 425 HOH HOH . C 3 HOH A 7 426 426 HOH HOH . C 3 HOH A 8 427 427 HOH HOH . C 3 HOH A 9 428 428 HOH HOH . C 3 HOH A 10 429 429 HOH HOH . C 3 HOH A 11 430 430 HOH HOH . C 3 HOH A 12 431 431 HOH HOH . C 3 HOH A 13 432 432 HOH HOH . C 3 HOH A 14 433 433 HOH HOH . C 3 HOH A 15 434 434 HOH HOH . C 3 HOH A 16 435 435 HOH HOH . C 3 HOH A 17 436 436 HOH HOH . C 3 HOH A 18 437 437 HOH HOH . C 3 HOH A 19 438 438 HOH HOH . C 3 HOH A 20 439 439 HOH HOH . C 3 HOH A 21 440 440 HOH HOH . C 3 HOH A 22 441 441 HOH HOH . C 3 HOH A 23 442 442 HOH HOH . C 3 HOH A 24 443 443 HOH HOH . C 3 HOH A 25 444 444 HOH HOH . C 3 HOH A 26 445 445 HOH HOH . C 3 HOH A 27 446 446 HOH HOH . C 3 HOH A 28 447 447 HOH HOH . C 3 HOH A 29 448 448 HOH HOH . C 3 HOH A 30 449 449 HOH HOH . C 3 HOH A 31 450 450 HOH HOH . C 3 HOH A 32 451 451 HOH HOH . C 3 HOH A 33 452 452 HOH HOH . C 3 HOH A 34 453 453 HOH HOH . C 3 HOH A 35 454 454 HOH HOH . C 3 HOH A 36 455 455 HOH HOH . C 3 HOH A 37 456 456 HOH HOH . C 3 HOH A 38 457 457 HOH HOH . C 3 HOH A 39 458 458 HOH HOH . C 3 HOH A 40 459 459 HOH HOH . C 3 HOH A 41 460 460 HOH HOH . C 3 HOH A 42 461 461 HOH HOH . C 3 HOH A 43 462 462 HOH HOH . C 3 HOH A 44 463 463 HOH HOH . C 3 HOH A 45 464 464 HOH HOH . C 3 HOH A 46 465 465 HOH HOH . C 3 HOH A 47 466 466 HOH HOH . C 3 HOH A 48 467 467 HOH HOH . C 3 HOH A 49 468 468 HOH HOH . C 3 HOH A 50 469 469 HOH HOH . C 3 HOH A 51 470 470 HOH HOH . C 3 HOH A 52 471 471 HOH HOH . C 3 HOH A 53 472 472 HOH HOH . C 3 HOH A 54 473 473 HOH HOH . C 3 HOH A 55 474 474 HOH HOH . C 3 HOH A 56 475 475 HOH HOH . C 3 HOH A 57 476 476 HOH HOH . C 3 HOH A 58 477 477 HOH HOH . C 3 HOH A 59 478 478 HOH HOH . C 3 HOH A 60 479 479 HOH HOH . C 3 HOH A 61 480 480 HOH HOH . C 3 HOH A 62 481 481 HOH HOH . C 3 HOH A 63 482 482 HOH HOH . C 3 HOH A 64 483 483 HOH HOH . C 3 HOH A 65 484 484 HOH HOH . C 3 HOH A 66 485 485 HOH HOH . C 3 HOH A 67 486 486 HOH HOH . C 3 HOH A 68 487 487 HOH HOH . C 3 HOH A 69 488 488 HOH HOH . C 3 HOH A 70 489 489 HOH HOH . C 3 HOH A 71 490 490 HOH HOH . C 3 HOH A 72 491 491 HOH HOH . C 3 HOH A 73 492 492 HOH HOH . C 3 HOH A 74 493 493 HOH HOH . C 3 HOH A 75 494 494 HOH HOH . C 3 HOH A 76 495 495 HOH HOH . C 3 HOH A 77 496 496 HOH HOH . C 3 HOH A 78 497 497 HOH HOH . C 3 HOH A 79 498 498 HOH HOH . C 3 HOH A 80 499 499 HOH HOH . C 3 HOH A 81 500 500 HOH HOH . C 3 HOH A 82 501 501 HOH HOH . C 3 HOH A 83 502 502 HOH HOH . C 3 HOH A 84 503 503 HOH HOH . C 3 HOH A 85 504 504 HOH HOH . C 3 HOH A 86 505 505 HOH HOH . C 3 HOH A 87 506 506 HOH HOH . C 3 HOH A 88 507 507 HOH HOH . C 3 HOH A 89 508 508 HOH HOH . C 3 HOH A 90 509 509 HOH HOH . C 3 HOH A 91 510 510 HOH HOH . C 3 HOH A 92 511 511 HOH HOH . C 3 HOH A 93 512 512 HOH HOH . C 3 HOH A 94 513 513 HOH HOH . C 3 HOH A 95 514 514 HOH HOH . C 3 HOH A 96 515 515 HOH HOH . C 3 HOH A 97 516 516 HOH HOH . C 3 HOH A 98 517 517 HOH HOH . C 3 HOH A 99 518 518 HOH HOH . C 3 HOH A 100 519 519 HOH HOH . C 3 HOH A 101 520 520 HOH HOH . C 3 HOH A 102 521 521 HOH HOH . C 3 HOH A 103 522 522 HOH HOH . C 3 HOH A 104 523 523 HOH HOH . C 3 HOH A 105 524 524 HOH HOH . C 3 HOH A 106 525 525 HOH HOH . C 3 HOH A 107 526 526 HOH HOH . C 3 HOH A 108 527 527 HOH HOH . C 3 HOH A 109 528 528 HOH HOH . C 3 HOH A 110 529 529 HOH HOH . C 3 HOH A 111 530 530 HOH HOH . C 3 HOH A 112 531 531 HOH HOH . C 3 HOH A 113 532 532 HOH HOH . C 3 HOH A 114 533 533 HOH HOH . C 3 HOH A 115 534 534 HOH HOH . C 3 HOH A 116 535 535 HOH HOH . C 3 HOH A 117 536 536 HOH HOH . C 3 HOH A 118 537 537 HOH HOH . C 3 HOH A 119 538 538 HOH HOH . C 3 HOH A 120 539 539 HOH HOH . C 3 HOH A 121 540 540 HOH HOH . C 3 HOH A 122 541 541 HOH HOH . C 3 HOH A 123 542 542 HOH HOH . C 3 HOH A 124 543 543 HOH HOH . C 3 HOH A 125 544 544 HOH HOH . C 3 HOH A 126 545 545 HOH HOH . C 3 HOH A 127 546 546 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 26.693 5.121 -14.535 1 20.35 ? N1 PLP 413 A 1 HETATM 2 C C2 PLP . . . B 2 26.226 6.169 -15.263 1 20.58 ? C2 PLP 413 A 1 HETATM 3 C C2A PLP . . . B 2 26.926 6.54 -16.575 1 20.19 ? C2A PLP 413 A 1 HETATM 4 C C3 PLP . . . B 2 25.12 6.836 -14.847 1 20.8 ? C3 PLP 413 A 1 HETATM 5 O O3 PLP . . . B 2 24.685 7.927 -15.539 1 20.86 ? O3 PLP 413 A 1 HETATM 6 C C4 PLP . . . B 2 24.465 6.428 -13.693 1 22 ? C4 PLP 413 A 1 HETATM 7 C C4A PLP . . . B 2 23.172 7.162 -13.302 1 22.94 ? C4A PLP 413 A 1 HETATM 8 C C5 PLP . . . B 2 24.961 5.32 -12.977 1 21.41 ? C5 PLP 413 A 1 HETATM 9 C C6 PLP . . . B 2 26.077 4.701 -13.416 1 20.69 ? C6 PLP 413 A 1 HETATM 10 C C5A PLP . . . B 2 24.305 4.703 -11.74 1 21.99 ? C5A PLP 413 A 1 HETATM 11 O O4P PLP . . . B 2 23.313 5.375 -10.994 1 22.22 ? O4P PLP 413 A 1 HETATM 12 P P PLP . . . B 2 22.691 4.742 -9.68 1 21.24 ? P PLP 413 A 1 HETATM 13 O O1P PLP . . . B 2 23.763 4.495 -8.703 1 21.82 ? O1P PLP 413 A 1 HETATM 14 O O2P PLP . . . B 2 21.868 3.596 -10.114 1 21.93 ? O2P PLP 413 A 1 HETATM 15 O O3P PLP . . . B 2 21.819 5.974 -9.181 1 21.93 ? O3P PLP 413 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #