data_1ARZ # _model_server_result.job_id b0lNrSJGU2fRW65TLunHxQ _model_server_result.datetime_utc '2024-12-16 07:06:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1arz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":303}' # _entry.id 1ARZ # _exptl.entry_id 1ARZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.119 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRIDINE-2,6-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ARZ _cell.length_a 137.6 _cell.length_b 123.8 _cell.length_c 66.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ARZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ALA 25 B ALA 25 1_555 F K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 B O LEU 26 B LEU 26 1_555 F K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc3 B O LEU 28 B LEU 28 1_555 F K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc4 B N LEU 28 B LEU 28 1_555 F K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.649 ? metalc ? metalc5 B O VAL 31 B VAL 31 1_555 F K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc6 F K K . B K 301 1_555 O O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc7 F K K . B K 301 1_555 O O HOH . B HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.313 ? metalc ? metalc8 D N ASP 3 D ASP 3 1_555 K K K . D K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.258 ? metalc ? metalc9 D O ALA 25 D ALA 25 1_555 K K K . D K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc10 D O LEU 26 D LEU 26 1_555 K K K . D K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc11 D O LEU 28 D LEU 28 1_555 K K K . D K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc12 D O VAL 31 D VAL 31 1_555 K K K . D K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? # _chem_comp.formula 'C7 H5 N O4' _chem_comp.formula_weight 167.119 _chem_comp.id PDC _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRIDINE-2,6-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DIPICOLINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PDC doub 314 n y N1 C6 PDC sing 315 n y C2 C3 PDC sing 316 n y C2 C7 PDC sing 317 n n C3 C4 PDC doub 318 n y C3 H3 PDC sing 319 n n C4 C5 PDC sing 320 n y C4 H4 PDC sing 321 n n C5 C6 PDC doub 322 n y C5 H5 PDC sing 323 n n C6 C8 PDC sing 324 n n C7 O1 PDC doub 325 n n C7 O2 PDC sing 326 n n O2 HO2 PDC sing 327 n n C8 O3 PDC doub 328 n n C8 O4 PDC sing 329 n n O4 HO4 PDC sing 330 n n # _atom_sites.entry_id 1ARZ _atom_sites.fract_transf_matrix[1][1] 0.007267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 301 301 PO4 PO4 . F 3 K B 1 301 811 K K . G 4 NAI B 1 302 274 NAI NAD . H 5 PDC B 1 303 275 PDC PDC . I 4 NAI C 1 301 274 NAI NAD . J 5 PDC C 1 302 275 PDC PDC . K 3 K D 1 301 1816 K K . L 4 NAI D 1 302 274 NAI NAD . M 5 PDC D 1 303 275 PDC PDC . N 6 HOH A 1 401 302 HOH HOH . N 6 HOH A 2 402 303 HOH HOH . N 6 HOH A 3 403 304 HOH HOH . N 6 HOH A 4 404 310 HOH HOH . N 6 HOH A 5 405 312 HOH HOH . N 6 HOH A 6 406 314 HOH HOH . N 6 HOH A 7 407 316 HOH HOH . N 6 HOH A 8 408 317 HOH HOH . N 6 HOH A 9 409 319 HOH HOH . N 6 HOH A 10 410 320 HOH HOH . N 6 HOH A 11 411 321 HOH HOH . N 6 HOH A 12 412 322 HOH HOH . N 6 HOH A 13 413 323 HOH HOH . N 6 HOH A 14 414 324 HOH HOH . N 6 HOH A 15 415 325 HOH HOH . N 6 HOH A 16 416 326 HOH HOH . N 6 HOH A 17 417 327 HOH HOH . N 6 HOH A 18 418 328 HOH HOH . N 6 HOH A 19 419 329 HOH HOH . N 6 HOH A 20 420 330 HOH HOH . N 6 HOH A 21 421 331 HOH HOH . N 6 HOH A 22 422 332 HOH HOH . N 6 HOH A 23 423 335 HOH HOH . N 6 HOH A 24 424 336 HOH HOH . N 6 HOH A 25 425 337 HOH HOH . N 6 HOH A 26 426 340 HOH HOH . N 6 HOH A 27 427 341 HOH HOH . N 6 HOH A 28 428 342 HOH HOH . N 6 HOH A 29 429 343 HOH HOH . N 6 HOH A 30 430 346 HOH HOH . N 6 HOH A 31 431 348 HOH HOH . N 6 HOH A 32 432 349 HOH HOH . N 6 HOH A 33 433 350 HOH HOH . N 6 HOH A 34 434 351 HOH HOH . N 6 HOH A 35 435 352 HOH HOH . N 6 HOH A 36 436 353 HOH HOH . N 6 HOH A 37 437 357 HOH HOH . N 6 HOH A 38 438 358 HOH HOH . N 6 HOH A 39 439 359 HOH HOH . N 6 HOH A 40 440 1323 HOH HOH . N 6 HOH A 41 441 1850 HOH HOH . O 6 HOH B 1 401 334 HOH HOH . O 6 HOH B 2 402 356 HOH HOH . O 6 HOH B 3 403 810 HOH HOH . O 6 HOH B 4 404 812 HOH HOH . O 6 HOH B 5 405 813 HOH HOH . O 6 HOH B 6 406 814 HOH HOH . O 6 HOH B 7 407 816 HOH HOH . O 6 HOH B 8 408 817 HOH HOH . O 6 HOH B 9 409 818 HOH HOH . O 6 HOH B 10 410 819 HOH HOH . O 6 HOH B 11 411 820 HOH HOH . O 6 HOH B 12 412 821 HOH HOH . O 6 HOH B 13 413 823 HOH HOH . O 6 HOH B 14 414 824 HOH HOH . O 6 HOH B 15 415 826 HOH HOH . O 6 HOH B 16 416 827 HOH HOH . O 6 HOH B 17 417 828 HOH HOH . O 6 HOH B 18 418 829 HOH HOH . O 6 HOH B 19 419 830 HOH HOH . O 6 HOH B 20 420 831 HOH HOH . O 6 HOH B 21 421 832 HOH HOH . O 6 HOH B 22 422 833 HOH HOH . O 6 HOH B 23 423 834 HOH HOH . O 6 HOH B 24 424 835 HOH HOH . O 6 HOH B 25 425 837 HOH HOH . O 6 HOH B 26 426 838 HOH HOH . O 6 HOH B 27 427 839 HOH HOH . O 6 HOH B 28 428 840 HOH HOH . O 6 HOH B 29 429 841 HOH HOH . O 6 HOH B 30 430 842 HOH HOH . O 6 HOH B 31 431 843 HOH HOH . O 6 HOH B 32 432 847 HOH HOH . O 6 HOH B 33 433 848 HOH HOH . O 6 HOH B 34 434 849 HOH HOH . O 6 HOH B 35 435 850 HOH HOH . O 6 HOH B 36 436 852 HOH HOH . O 6 HOH B 37 437 853 HOH HOH . O 6 HOH B 38 438 854 HOH HOH . O 6 HOH B 39 439 855 HOH HOH . O 6 HOH B 40 440 857 HOH HOH . O 6 HOH B 41 441 859 HOH HOH . O 6 HOH B 42 442 860 HOH HOH . O 6 HOH B 43 443 861 HOH HOH . O 6 HOH B 44 444 863 HOH HOH . O 6 HOH B 45 445 864 HOH HOH . O 6 HOH B 46 446 865 HOH HOH . O 6 HOH B 47 447 1834 HOH HOH . P 6 HOH C 1 401 315 HOH HOH . P 6 HOH C 2 402 338 HOH HOH . P 6 HOH C 3 403 339 HOH HOH . P 6 HOH C 4 404 851 HOH HOH . P 6 HOH C 5 405 862 HOH HOH . P 6 HOH C 6 406 1310 HOH HOH . P 6 HOH C 7 407 1311 HOH HOH . P 6 HOH C 8 408 1312 HOH HOH . P 6 HOH C 9 409 1313 HOH HOH . P 6 HOH C 10 410 1314 HOH HOH . P 6 HOH C 11 411 1315 HOH HOH . P 6 HOH C 12 412 1316 HOH HOH . P 6 HOH C 13 413 1317 HOH HOH . P 6 HOH C 14 414 1318 HOH HOH . P 6 HOH C 15 415 1319 HOH HOH . P 6 HOH C 16 416 1320 HOH HOH . P 6 HOH C 17 417 1321 HOH HOH . P 6 HOH C 18 418 1322 HOH HOH . P 6 HOH C 19 419 1325 HOH HOH . P 6 HOH C 20 420 1326 HOH HOH . P 6 HOH C 21 421 1327 HOH HOH . P 6 HOH C 22 422 1328 HOH HOH . P 6 HOH C 23 423 1329 HOH HOH . P 6 HOH C 24 424 1330 HOH HOH . P 6 HOH C 25 425 1331 HOH HOH . P 6 HOH C 26 426 1332 HOH HOH . P 6 HOH C 27 427 1333 HOH HOH . P 6 HOH C 28 428 1334 HOH HOH . P 6 HOH C 29 429 1335 HOH HOH . P 6 HOH C 30 430 1336 HOH HOH . P 6 HOH C 31 431 1337 HOH HOH . P 6 HOH C 32 432 1338 HOH HOH . P 6 HOH C 33 433 1339 HOH HOH . P 6 HOH C 34 434 1340 HOH HOH . P 6 HOH C 35 435 1341 HOH HOH . P 6 HOH C 36 436 1342 HOH HOH . P 6 HOH C 37 437 1343 HOH HOH . P 6 HOH C 38 438 1344 HOH HOH . P 6 HOH C 39 439 1345 HOH HOH . P 6 HOH C 40 440 1347 HOH HOH . P 6 HOH C 41 441 1348 HOH HOH . P 6 HOH C 42 442 1349 HOH HOH . P 6 HOH C 43 443 1351 HOH HOH . P 6 HOH C 44 444 1352 HOH HOH . P 6 HOH C 45 445 1824 HOH HOH . Q 6 HOH D 1 401 311 HOH HOH . Q 6 HOH D 2 402 313 HOH HOH . Q 6 HOH D 3 403 318 HOH HOH . Q 6 HOH D 4 404 347 HOH HOH . Q 6 HOH D 5 405 822 HOH HOH . Q 6 HOH D 6 406 825 HOH HOH . Q 6 HOH D 7 407 844 HOH HOH . Q 6 HOH D 8 408 845 HOH HOH . Q 6 HOH D 9 409 846 HOH HOH . Q 6 HOH D 10 410 858 HOH HOH . Q 6 HOH D 11 411 1810 HOH HOH . Q 6 HOH D 12 412 1811 HOH HOH . Q 6 HOH D 13 413 1812 HOH HOH . Q 6 HOH D 14 414 1813 HOH HOH . Q 6 HOH D 15 415 1814 HOH HOH . Q 6 HOH D 16 416 1815 HOH HOH . Q 6 HOH D 17 417 1817 HOH HOH . Q 6 HOH D 18 418 1818 HOH HOH . Q 6 HOH D 19 419 1819 HOH HOH . Q 6 HOH D 20 420 1820 HOH HOH . Q 6 HOH D 21 421 1821 HOH HOH . Q 6 HOH D 22 422 1822 HOH HOH . Q 6 HOH D 23 423 1825 HOH HOH . Q 6 HOH D 24 424 1826 HOH HOH . Q 6 HOH D 25 425 1827 HOH HOH . Q 6 HOH D 26 426 1828 HOH HOH . Q 6 HOH D 27 427 1829 HOH HOH . Q 6 HOH D 28 428 1830 HOH HOH . Q 6 HOH D 29 429 1831 HOH HOH . Q 6 HOH D 30 430 1832 HOH HOH . Q 6 HOH D 31 431 1833 HOH HOH . Q 6 HOH D 32 432 1835 HOH HOH . Q 6 HOH D 33 433 1836 HOH HOH . Q 6 HOH D 34 434 1837 HOH HOH . Q 6 HOH D 35 435 1838 HOH HOH . Q 6 HOH D 36 436 1839 HOH HOH . Q 6 HOH D 37 437 1840 HOH HOH . Q 6 HOH D 38 438 1841 HOH HOH . Q 6 HOH D 39 439 1842 HOH HOH . Q 6 HOH D 40 440 1843 HOH HOH . Q 6 HOH D 41 441 1844 HOH HOH . Q 6 HOH D 42 442 1845 HOH HOH . Q 6 HOH D 43 443 1846 HOH HOH . Q 6 HOH D 44 444 1847 HOH HOH . Q 6 HOH D 45 445 1849 HOH HOH . Q 6 HOH D 46 446 1851 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PDC . . . M 5 76.908 56.312 8.629 1 17.75 ? N1 PDC 303 D 1 HETATM 2 C C2 PDC . . . M 5 76.42 55.689 7.482 1 16.72 ? C2 PDC 303 D 1 HETATM 3 C C3 PDC . . . M 5 76.736 54.359 7.212 1 17.73 ? C3 PDC 303 D 1 HETATM 4 C C4 PDC . . . M 5 77.536 53.636 8.103 1 20.16 ? C4 PDC 303 D 1 HETATM 5 C C5 PDC . . . M 5 78.002 54.25 9.281 1 21.49 ? C5 PDC 303 D 1 HETATM 6 C C6 PDC . . . M 5 77.688 55.599 9.549 1 17.43 ? C6 PDC 303 D 1 HETATM 7 C C7 PDC . . . M 5 75.599 56.419 6.665 1 22.45 ? C7 PDC 303 D 1 HETATM 8 O O1 PDC . . . M 5 74.992 55.814 5.649 1 21.85 ? O1 PDC 303 D 1 HETATM 9 O O2 PDC . . . M 5 75.32 57.721 6.922 1 29.5 ? O2 PDC 303 D 1 HETATM 10 C C8 PDC . . . M 5 78.112 56.269 10.703 1 12.86 ? C8 PDC 303 D 1 HETATM 11 O O3 PDC . . . M 5 78.619 55.586 11.763 1 13.23 ? O3 PDC 303 D 1 HETATM 12 O O4 PDC . . . M 5 77.906 57.568 10.827 1 2 ? O4 PDC 303 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 47 _model_server_stats.element_count 12 #