data_1ASC # _model_server_result.job_id uQdvt1Oa6btAK8j5HqcKcg _model_server_result.datetime_utc '2025-07-03 08:06:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1asc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":409}' # _entry.id 1ASC # _exptl.entry_id 1ASC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-METHYL-4-DEOXY-4-AMINO-PYRIDOXAL-5-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ASC _cell.length_a 157.5 _cell.length_b 85 _cell.length_c 78.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ASC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 85 78.6 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H16 N2 O5 P 1' _chem_comp.formula_weight 263.208 _chem_comp.id NPL _chem_comp.mon_nstd_flag . _chem_comp.name N-METHYL-4-DEOXY-4-AMINO-PYRIDOXAL-5-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 NPL sing 237 n n N1 C2 NPL sing 238 n y N1 C6 NPL doub 239 n y C1 H11 NPL sing 240 n n C1 H12 NPL sing 241 n n C1 H13 NPL sing 242 n n C2 C2A NPL sing 243 n n C2 C3 NPL doub 244 n y C2A H21 NPL sing 245 n n C2A H22 NPL sing 246 n n C2A H23 NPL sing 247 n n C3 O3 NPL sing 248 n n C3 C4 NPL sing 249 n y O3 HO3 NPL sing 250 n n C4 C4A NPL sing 251 n n C4 C5 NPL doub 252 n y C4A N4 NPL sing 253 n n C4A H41 NPL sing 254 n n C4A H42 NPL sing 255 n n N4 HN41 NPL sing 256 n n N4 HN42 NPL sing 257 n n C5 C5A NPL sing 258 n n C5 C6 NPL sing 259 n y C5A O4P NPL sing 260 n n C5A H51 NPL sing 261 n n C5A H52 NPL sing 262 n n O4P P NPL sing 263 n n P O1P NPL doub 264 n n P O2P NPL sing 265 n n P O3P NPL sing 266 n n O2P HOP2 NPL sing 267 n n O3P HOP3 NPL sing 268 n n C6 H6 NPL sing 269 n n # _atom_sites.entry_id 1ASC _atom_sites.fract_transf_matrix[1][1] 0.006349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NPL A 1 409 409 NPL NPL . C 3 HOH A 1 500 500 HOH HOH . C 3 HOH A 2 501 501 HOH HOH . C 3 HOH A 3 502 502 HOH HOH . C 3 HOH A 4 503 503 HOH HOH . C 3 HOH A 5 504 504 HOH HOH . C 3 HOH A 6 505 505 HOH HOH . C 3 HOH A 7 506 506 HOH HOH . C 3 HOH A 8 507 507 HOH HOH . C 3 HOH A 9 508 508 HOH HOH . C 3 HOH A 10 509 509 HOH HOH . C 3 HOH A 11 510 510 HOH HOH . C 3 HOH A 12 511 511 HOH HOH . C 3 HOH A 13 512 512 HOH HOH . C 3 HOH A 14 513 513 HOH HOH . C 3 HOH A 15 514 514 HOH HOH . C 3 HOH A 16 515 515 HOH HOH . C 3 HOH A 17 516 516 HOH HOH . C 3 HOH A 18 517 517 HOH HOH . C 3 HOH A 19 518 518 HOH HOH . C 3 HOH A 20 519 519 HOH HOH . C 3 HOH A 21 520 520 HOH HOH . C 3 HOH A 22 521 521 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NPL . . . B 2 130.835 38.611 25.472 1 19 ? N1 NPL 409 A 1 HETATM 2 C C1 NPL . . . B 2 130.292 39.909 25.45 1 19 ? C1 NPL 409 A 1 HETATM 3 C C2 NPL . . . B 2 130.583 37.729 24.444 1 19 ? C2 NPL 409 A 1 HETATM 4 C C2A NPL . . . B 2 129.72 38.053 23.356 1 19 ? C2A NPL 409 A 1 HETATM 5 C C3 NPL . . . B 2 131.113 36.478 24.497 1 19 ? C3 NPL 409 A 1 HETATM 6 O O3 NPL . . . B 2 130.785 35.624 23.489 1 19 ? O3 NPL 409 A 1 HETATM 7 C C4 NPL . . . B 2 131.964 36.12 25.542 1 19 ? C4 NPL 409 A 1 HETATM 8 C C4A NPL . . . B 2 132.668 34.674 25.583 1 19 ? C4A NPL 409 A 1 HETATM 9 N N4 NPL . . . B 2 133.065 33.984 26.744 1 19 ? N4 NPL 409 A 1 HETATM 10 C C5 NPL . . . B 2 132.263 37.075 26.527 1 19 ? C5 NPL 409 A 1 HETATM 11 C C5A NPL . . . B 2 133.148 36.722 27.676 1 19 ? C5A NPL 409 A 1 HETATM 12 O O4P NPL . . . B 2 133.146 37.694 28.653 1 19 ? O4P NPL 409 A 1 HETATM 13 P P NPL . . . B 2 134.514 38.002 29.331 1 19 ? P NPL 409 A 1 HETATM 14 O O1P NPL . . . B 2 133.983 38.97 30.264 1 19 ? O1P NPL 409 A 1 HETATM 15 O O2P NPL . . . B 2 135.427 38.487 28.322 1 19 ? O2P NPL 409 A 1 HETATM 16 O O3P NPL . . . B 2 134.975 36.772 29.911 1 19 ? O3P NPL 409 A 1 HETATM 17 C C6 NPL . . . B 2 131.685 38.283 26.492 1 19 ? C6 NPL 409 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #