data_1ASD # _model_server_result.job_id qtS8iJ7cgHVX-oLzi1IDjg _model_server_result.datetime_utc '2024-10-24 04:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1asd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":409}' # _entry.id 1ASD # _exptl.entry_id 1ASD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.176 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-METHYL-PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ASD _cell.length_a 157.96 _cell.length_b 85.41 _cell.length_c 78.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ASD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 156.96 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id MPL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MPL _struct_conn.ptnr2_auth_seq_id 409 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.311 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H13 N O6 P 1' _chem_comp.formula_weight 262.176 _chem_comp.id MPL _chem_comp.mon_nstd_flag . _chem_comp.name "N-METHYL-PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P MPL doub 248 n n P O2P MPL sing 249 n n P O3P MPL sing 250 n n P O4P MPL sing 251 n n O2P HOP2 MPL sing 252 n n O3P HOP3 MPL sing 253 n n O4P C5A MPL sing 254 n n C5A C5 MPL sing 255 n n C5A H51 MPL sing 256 n n C5A H52 MPL sing 257 n n C5 C6 MPL sing 258 n y C5 C4 MPL doub 259 n y N1 C1 MPL sing 260 n n N1 C6 MPL doub 261 n y N1 C2 MPL sing 262 n y C1 H11 MPL sing 263 n n C1 H12 MPL sing 264 n n C1 H13 MPL sing 265 n n C6 H6 MPL sing 266 n n C2 C2A MPL sing 267 n n C2 C3 MPL doub 268 n y C2A H21 MPL sing 269 n n C2A H22 MPL sing 270 n n C2A H23 MPL sing 271 n n C3 O3 MPL sing 272 n n C3 C4 MPL sing 273 n y O3 HO3 MPL sing 274 n n C4 C4A MPL sing 275 n n C4A O MPL doub 276 n n C4A H MPL sing 277 n n # _atom_sites.entry_id 1ASD _atom_sites.fract_transf_matrix[1][1] 0.006331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPL A 1 409 258 MPL MPL . C 3 MAE A 1 410 410 MAE MAE . D 4 HOH A 1 500 500 HOH HOH . D 4 HOH A 2 501 501 HOH HOH . D 4 HOH A 3 502 502 HOH HOH . D 4 HOH A 4 503 503 HOH HOH . D 4 HOH A 5 504 504 HOH HOH . D 4 HOH A 6 505 505 HOH HOH . D 4 HOH A 7 506 506 HOH HOH . D 4 HOH A 8 507 507 HOH HOH . D 4 HOH A 9 508 508 HOH HOH . D 4 HOH A 10 509 509 HOH HOH . D 4 HOH A 11 510 510 HOH HOH . D 4 HOH A 12 511 511 HOH HOH . D 4 HOH A 13 512 512 HOH HOH . D 4 HOH A 14 513 513 HOH HOH . D 4 HOH A 15 514 514 HOH HOH . D 4 HOH A 16 515 515 HOH HOH . D 4 HOH A 17 516 516 HOH HOH . D 4 HOH A 18 517 517 HOH HOH . D 4 HOH A 19 518 518 HOH HOH . D 4 HOH A 20 519 519 HOH HOH . D 4 HOH A 21 520 520 HOH HOH . D 4 HOH A 22 521 521 HOH HOH . D 4 HOH A 23 522 522 HOH HOH . D 4 HOH A 24 523 523 HOH HOH . D 4 HOH A 25 524 524 HOH HOH . D 4 HOH A 26 525 525 HOH HOH . D 4 HOH A 27 526 526 HOH HOH . D 4 HOH A 28 527 527 HOH HOH . D 4 HOH A 29 528 528 HOH HOH . D 4 HOH A 30 529 529 HOH HOH . D 4 HOH A 31 530 530 HOH HOH . D 4 HOH A 32 531 531 HOH HOH . D 4 HOH A 33 532 532 HOH HOH . D 4 HOH A 34 533 533 HOH HOH . D 4 HOH A 35 534 534 HOH HOH . D 4 HOH A 36 535 535 HOH HOH . D 4 HOH A 37 536 536 HOH HOH . D 4 HOH A 38 537 537 HOH HOH . D 4 HOH A 39 538 538 HOH HOH . D 4 HOH A 40 539 539 HOH HOH . D 4 HOH A 41 540 540 HOH HOH . D 4 HOH A 42 541 541 HOH HOH . D 4 HOH A 43 542 542 HOH HOH . D 4 HOH A 44 543 543 HOH HOH . D 4 HOH A 45 544 544 HOH HOH . D 4 HOH A 46 545 545 HOH HOH . D 4 HOH A 47 546 546 HOH HOH . D 4 HOH A 48 547 547 HOH HOH . D 4 HOH A 49 548 548 HOH HOH . D 4 HOH A 50 549 549 HOH HOH . D 4 HOH A 51 550 550 HOH HOH . D 4 HOH A 52 551 551 HOH HOH . D 4 HOH A 53 552 552 HOH HOH . D 4 HOH A 54 553 553 HOH HOH . D 4 HOH A 55 555 555 HOH HOH . D 4 HOH A 56 557 557 HOH HOH . D 4 HOH A 57 558 558 HOH HOH . D 4 HOH A 58 559 559 HOH HOH . D 4 HOH A 59 560 560 HOH HOH . D 4 HOH A 60 561 561 HOH HOH . D 4 HOH A 61 562 562 HOH HOH . D 4 HOH A 62 563 563 HOH HOH . D 4 HOH A 63 564 564 HOH HOH . D 4 HOH A 64 565 565 HOH HOH . D 4 HOH A 65 566 566 HOH HOH . D 4 HOH A 66 567 567 HOH HOH . D 4 HOH A 67 568 568 HOH HOH . D 4 HOH A 68 569 569 HOH HOH . D 4 HOH A 69 570 570 HOH HOH . D 4 HOH A 70 571 571 HOH HOH . D 4 HOH A 71 572 572 HOH HOH . D 4 HOH A 72 573 573 HOH HOH . D 4 HOH A 73 574 574 HOH HOH . D 4 HOH A 74 575 575 HOH HOH . D 4 HOH A 75 576 576 HOH HOH . D 4 HOH A 76 577 577 HOH HOH . D 4 HOH A 77 578 578 HOH HOH . D 4 HOH A 78 579 579 HOH HOH . D 4 HOH A 79 580 580 HOH HOH . D 4 HOH A 80 581 581 HOH HOH . D 4 HOH A 81 582 582 HOH HOH . D 4 HOH A 82 583 583 HOH HOH . D 4 HOH A 83 584 584 HOH HOH . D 4 HOH A 84 585 585 HOH HOH . D 4 HOH A 85 586 586 HOH HOH . D 4 HOH A 86 587 587 HOH HOH . D 4 HOH A 87 588 588 HOH HOH . D 4 HOH A 88 589 589 HOH HOH . D 4 HOH A 89 590 590 HOH HOH . D 4 HOH A 90 591 591 HOH HOH . D 4 HOH A 91 592 592 HOH HOH . D 4 HOH A 92 593 593 HOH HOH . D 4 HOH A 93 594 594 HOH HOH . D 4 HOH A 94 595 595 HOH HOH . D 4 HOH A 95 596 596 HOH HOH . D 4 HOH A 96 597 597 HOH HOH . D 4 HOH A 97 598 598 HOH HOH . D 4 HOH A 98 599 599 HOH HOH . D 4 HOH A 99 600 600 HOH HOH . D 4 HOH A 100 601 601 HOH HOH . D 4 HOH A 101 602 602 HOH HOH . D 4 HOH A 102 603 603 HOH HOH . D 4 HOH A 103 604 604 HOH HOH . D 4 HOH A 104 605 605 HOH HOH . D 4 HOH A 105 606 606 HOH HOH . D 4 HOH A 106 607 607 HOH HOH . D 4 HOH A 107 608 608 HOH HOH . D 4 HOH A 108 609 609 HOH HOH . D 4 HOH A 109 610 610 HOH HOH . D 4 HOH A 110 611 611 HOH HOH . D 4 HOH A 111 612 612 HOH HOH . D 4 HOH A 112 613 613 HOH HOH . D 4 HOH A 113 614 614 HOH HOH . D 4 HOH A 114 615 615 HOH HOH . D 4 HOH A 115 616 616 HOH HOH . D 4 HOH A 116 617 617 HOH HOH . D 4 HOH A 117 618 618 HOH HOH . D 4 HOH A 118 619 619 HOH HOH . D 4 HOH A 119 620 620 HOH HOH . D 4 HOH A 120 621 621 HOH HOH . D 4 HOH A 121 622 622 HOH HOH . D 4 HOH A 122 623 623 HOH HOH . D 4 HOH A 123 624 624 HOH HOH . D 4 HOH A 124 625 625 HOH HOH . D 4 HOH A 125 626 626 HOH HOH . D 4 HOH A 126 627 627 HOH HOH . D 4 HOH A 127 628 628 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P MPL . . . B 2 -135.239 3.766 68.312 1 8.14 ? P MPL 409 A 1 HETATM 2 O O1P MPL . . . B 2 -134.164 3.581 69.335 1 13.64 ? O1P MPL 409 A 1 HETATM 3 O O2P MPL . . . B 2 -136.103 4.965 68.436 1 11.54 ? O2P MPL 409 A 1 HETATM 4 O O3P MPL . . . B 2 -135.916 2.513 67.936 1 11.56 ? O3P MPL 409 A 1 HETATM 5 O O4P MPL . . . B 2 -134.408 4.027 67.039 1 10.63 ? O4P MPL 409 A 1 HETATM 6 C C5A MPL . . . B 2 -134.397 5.282 66.431 1 23.28 ? C5A MPL 409 A 1 HETATM 7 C C5 MPL . . . B 2 -133.647 5.106 65.191 1 30.29 ? C5 MPL 409 A 1 HETATM 8 N N1 MPL . . . B 2 -131.731 4.162 64.158 1 30.21 ? N1 MPL 409 A 1 HETATM 9 C C1 MPL . . . B 2 -130.647 3.345 64.307 1 31.87 ? C1 MPL 409 A 1 HETATM 10 C C6 MPL . . . B 2 -132.528 4.319 65.233 1 30.94 ? C6 MPL 409 A 1 HETATM 11 C C2 MPL . . . B 2 -132.061 4.786 62.961 1 32.41 ? C2 MPL 409 A 1 HETATM 12 C C2A MPL . . . B 2 -131.166 4.654 61.745 1 28.03 ? C2A MPL 409 A 1 HETATM 13 C C3 MPL . . . B 2 -133.217 5.578 62.891 1 36.69 ? C3 MPL 409 A 1 HETATM 14 O O3 MPL . . . B 2 -133.523 6.263 61.712 1 38.5 ? O3 MPL 409 A 1 HETATM 15 C C4 MPL . . . B 2 -134.031 5.703 64.023 1 32.97 ? C4 MPL 409 A 1 HETATM 16 C C4A MPL . . . B 2 -135.269 6.599 63.93 1 37.55 ? C4A MPL 409 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #