data_1ASE # _model_server_result.job_id ULYrApPsJufBJNWd6zLfLQ _model_server_result.datetime_utc '2025-02-27 01:33:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ase # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":409}' # _entry.id 1ASE # _exptl.entry_id 1ASE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.141 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE-N-OXIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ASE _cell.length_a 157.5 _cell.length_b 84.8 _cell.length_c 78.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ASE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 156.4 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id NOP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NOP _struct_conn.ptnr2_auth_seq_id 409 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.266 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O7 P' _chem_comp.formula_weight 263.141 _chem_comp.id NOP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE-N-OXIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 NOP sing 248 n n N1 C2 NOP sing 249 n y N1 C6 NOP doub 250 n y C2 C2A NOP sing 251 n n C2 C3 NOP doub 252 n y C2A H2A1 NOP sing 253 n n C2A H2A2 NOP sing 254 n n C2A H2A3 NOP sing 255 n n C3 O3 NOP sing 256 n n C3 C4 NOP sing 257 n y O3 HO3 NOP sing 258 n n C4 C4A NOP sing 259 n n C4 C5 NOP doub 260 n y C4A O4A NOP doub 261 n n C4A H4A NOP sing 262 n n C5 C6 NOP sing 263 n y C5 C5A NOP sing 264 n n C6 H6 NOP sing 265 n n C5A O4P NOP sing 266 n n C5A H5A1 NOP sing 267 n n C5A H5A2 NOP sing 268 n n O4P P NOP sing 269 n n P O1P NOP doub 270 n n P O2P NOP sing 271 n n P O3P NOP sing 272 n n O2P HOP2 NOP sing 273 n n O3P HOP3 NOP sing 274 n n # _atom_sites.entry_id 1ASE _atom_sites.fract_transf_matrix[1][1] 0.006349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NOP A 1 409 258 NOP NOP . C 3 MAE A 1 410 410 MAE MAE . D 4 HOH A 1 500 500 HOH HOH . D 4 HOH A 2 501 501 HOH HOH . D 4 HOH A 3 502 502 HOH HOH . D 4 HOH A 4 503 503 HOH HOH . D 4 HOH A 5 504 504 HOH HOH . D 4 HOH A 6 505 505 HOH HOH . D 4 HOH A 7 506 506 HOH HOH . D 4 HOH A 8 507 507 HOH HOH . D 4 HOH A 9 508 508 HOH HOH . D 4 HOH A 10 509 509 HOH HOH . D 4 HOH A 11 510 510 HOH HOH . D 4 HOH A 12 511 511 HOH HOH . D 4 HOH A 13 512 512 HOH HOH . D 4 HOH A 14 513 513 HOH HOH . D 4 HOH A 15 514 514 HOH HOH . D 4 HOH A 16 515 515 HOH HOH . D 4 HOH A 17 516 516 HOH HOH . D 4 HOH A 18 517 517 HOH HOH . D 4 HOH A 19 518 518 HOH HOH . D 4 HOH A 20 519 519 HOH HOH . D 4 HOH A 21 520 520 HOH HOH . D 4 HOH A 22 521 521 HOH HOH . D 4 HOH A 23 522 522 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NOP . . . B 2 -130.711 4.04 63.586 1 2 ? N1 NOP 409 A 1 HETATM 2 O O1 NOP . . . B 2 -129.636 3.527 63.49 1 2 ? O1 NOP 409 A 1 HETATM 3 C C2 NOP . . . B 2 -131.339 4.681 62.569 1 2 ? C2 NOP 409 A 1 HETATM 4 C C2A NOP . . . B 2 -130.695 4.72 61.213 1 2 ? C2A NOP 409 A 1 HETATM 5 C C3 NOP . . . B 2 -132.554 5.305 62.796 1 2 ? C3 NOP 409 A 1 HETATM 6 O O3 NOP . . . B 2 -133.172 5.991 61.816 1 2 ? O3 NOP 409 A 1 HETATM 7 C C4 NOP . . . B 2 -133.139 5.26 64.028 1 2 ? C4 NOP 409 A 1 HETATM 8 C C4A NOP . . . B 2 -134.466 5.912 64.224 1 2 ? C4A NOP 409 A 1 HETATM 9 C C5 NOP . . . B 2 -132.439 4.567 65.062 1 2 ? C5 NOP 409 A 1 HETATM 10 C C6 NOP . . . B 2 -131.261 3.98 64.801 1 2 ? C6 NOP 409 A 1 HETATM 11 C C5A NOP . . . B 2 -132.909 4.51 66.47 1 2 ? C5A NOP 409 A 1 HETATM 12 O O4P NOP . . . B 2 -133.946 3.587 66.735 1 2 ? O4P NOP 409 A 1 HETATM 13 P P NOP . . . B 2 -134.794 3.706 67.999 1 2 ? P NOP 409 A 1 HETATM 14 O O1P NOP . . . B 2 -133.95 3.369 69.155 1 2 ? O1P NOP 409 A 1 HETATM 15 O O2P NOP . . . B 2 -135.299 5.085 67.969 1 2 ? O2P NOP 409 A 1 HETATM 16 O O3P NOP . . . B 2 -135.778 2.689 67.65 1 2 ? O3P NOP 409 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #