data_1ASG # _model_server_result.job_id xPSj0gevYQehS-xHmUrEkg _model_server_result.datetime_utc '2024-12-04 09:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1asg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":409}' # _entry.id 1ASG # _exptl.entry_id 1ASG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ASG _cell.length_a 157.8 _cell.length_b 85.5 _cell.length_c 78.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ASG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 157.4 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 409 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.266 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 271 n y N1 C6 PLP sing 272 n y C2 C2A PLP sing 273 n n C2 C3 PLP sing 274 n y C2A H2A1 PLP sing 275 n n C2A H2A2 PLP sing 276 n n C2A H2A3 PLP sing 277 n n C3 O3 PLP sing 278 n n C3 C4 PLP doub 279 n y O3 HO3 PLP sing 280 n n C4 C4A PLP sing 281 n n C4 C5 PLP sing 282 n y C4A O4A PLP doub 283 n n C4A H4A PLP sing 284 n n C5 C6 PLP doub 285 n y C5 C5A PLP sing 286 n n C6 H6 PLP sing 287 n n C5A O4P PLP sing 288 n n C5A H5A1 PLP sing 289 n n C5A H5A2 PLP sing 290 n n O4P P PLP sing 291 n n P O1P PLP doub 292 n n P O2P PLP sing 293 n n P O3P PLP sing 294 n n O2P HOP2 PLP sing 295 n n O3P HOP3 PLP sing 296 n n # _atom_sites.entry_id 1ASG _atom_sites.fract_transf_matrix[1][1] 0.006337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 409 258 PLP PLP . C 3 MAE A 1 410 410 MAE MAE . D 4 HOH A 1 500 500 HOH HOH . D 4 HOH A 2 501 501 HOH HOH . D 4 HOH A 3 502 502 HOH HOH . D 4 HOH A 4 503 503 HOH HOH . D 4 HOH A 5 504 504 HOH HOH . D 4 HOH A 6 505 505 HOH HOH . D 4 HOH A 7 506 506 HOH HOH . D 4 HOH A 8 507 507 HOH HOH . D 4 HOH A 9 508 508 HOH HOH . D 4 HOH A 10 509 509 HOH HOH . D 4 HOH A 11 510 510 HOH HOH . D 4 HOH A 12 511 511 HOH HOH . D 4 HOH A 13 512 512 HOH HOH . D 4 HOH A 14 513 513 HOH HOH . D 4 HOH A 15 514 514 HOH HOH . D 4 HOH A 16 515 515 HOH HOH . D 4 HOH A 17 516 516 HOH HOH . D 4 HOH A 18 517 517 HOH HOH . D 4 HOH A 19 518 518 HOH HOH . D 4 HOH A 20 519 519 HOH HOH . D 4 HOH A 21 520 520 HOH HOH . D 4 HOH A 22 521 521 HOH HOH . D 4 HOH A 23 522 522 HOH HOH . D 4 HOH A 24 523 523 HOH HOH . D 4 HOH A 25 524 524 HOH HOH . D 4 HOH A 26 525 525 HOH HOH . D 4 HOH A 27 526 526 HOH HOH . D 4 HOH A 28 527 527 HOH HOH . D 4 HOH A 29 528 528 HOH HOH . D 4 HOH A 30 529 529 HOH HOH . D 4 HOH A 31 530 530 HOH HOH . D 4 HOH A 32 531 531 HOH HOH . D 4 HOH A 33 532 532 HOH HOH . D 4 HOH A 34 533 533 HOH HOH . D 4 HOH A 35 534 534 HOH HOH . D 4 HOH A 36 535 535 HOH HOH . D 4 HOH A 37 536 536 HOH HOH . D 4 HOH A 38 537 537 HOH HOH . D 4 HOH A 39 538 538 HOH HOH . D 4 HOH A 40 539 539 HOH HOH . D 4 HOH A 41 540 540 HOH HOH . D 4 HOH A 42 541 541 HOH HOH . D 4 HOH A 43 542 542 HOH HOH . D 4 HOH A 44 543 543 HOH HOH . D 4 HOH A 45 544 544 HOH HOH . D 4 HOH A 46 545 545 HOH HOH . D 4 HOH A 47 546 546 HOH HOH . D 4 HOH A 48 547 547 HOH HOH . D 4 HOH A 49 548 548 HOH HOH . D 4 HOH A 50 549 549 HOH HOH . D 4 HOH A 51 550 550 HOH HOH . D 4 HOH A 52 551 551 HOH HOH . D 4 HOH A 53 552 552 HOH HOH . D 4 HOH A 54 553 553 HOH HOH . D 4 HOH A 55 554 554 HOH HOH . D 4 HOH A 56 555 555 HOH HOH . D 4 HOH A 57 556 556 HOH HOH . D 4 HOH A 58 557 557 HOH HOH . D 4 HOH A 59 558 558 HOH HOH . D 4 HOH A 60 559 559 HOH HOH . D 4 HOH A 61 560 560 HOH HOH . D 4 HOH A 62 561 561 HOH HOH . D 4 HOH A 63 562 562 HOH HOH . D 4 HOH A 64 563 563 HOH HOH . D 4 HOH A 65 564 564 HOH HOH . D 4 HOH A 66 565 565 HOH HOH . D 4 HOH A 67 566 566 HOH HOH . D 4 HOH A 68 567 567 HOH HOH . D 4 HOH A 69 568 568 HOH HOH . D 4 HOH A 70 569 569 HOH HOH . D 4 HOH A 71 570 570 HOH HOH . D 4 HOH A 72 571 571 HOH HOH . D 4 HOH A 73 572 572 HOH HOH . D 4 HOH A 74 573 573 HOH HOH . D 4 HOH A 75 574 574 HOH HOH . D 4 HOH A 76 575 575 HOH HOH . D 4 HOH A 77 576 576 HOH HOH . D 4 HOH A 78 577 577 HOH HOH . D 4 HOH A 79 578 578 HOH HOH . D 4 HOH A 80 579 579 HOH HOH . D 4 HOH A 81 580 580 HOH HOH . D 4 HOH A 82 581 581 HOH HOH . D 4 HOH A 83 582 582 HOH HOH . D 4 HOH A 84 583 583 HOH HOH . D 4 HOH A 85 584 584 HOH HOH . D 4 HOH A 86 585 585 HOH HOH . D 4 HOH A 87 586 586 HOH HOH . D 4 HOH A 88 587 587 HOH HOH . D 4 HOH A 89 588 588 HOH HOH . D 4 HOH A 90 589 589 HOH HOH . D 4 HOH A 91 590 590 HOH HOH . D 4 HOH A 92 591 591 HOH HOH . D 4 HOH A 93 592 592 HOH HOH . D 4 HOH A 94 593 593 HOH HOH . D 4 HOH A 95 594 594 HOH HOH . D 4 HOH A 96 595 595 HOH HOH . D 4 HOH A 97 596 596 HOH HOH . D 4 HOH A 98 597 597 HOH HOH . D 4 HOH A 99 598 598 HOH HOH . D 4 HOH A 100 599 599 HOH HOH . D 4 HOH A 101 600 600 HOH HOH . D 4 HOH A 102 601 601 HOH HOH . D 4 HOH A 103 602 602 HOH HOH . D 4 HOH A 104 603 603 HOH HOH . D 4 HOH A 105 604 604 HOH HOH . D 4 HOH A 106 605 605 HOH HOH . D 4 HOH A 107 606 606 HOH HOH . D 4 HOH A 108 607 607 HOH HOH . D 4 HOH A 109 608 608 HOH HOH . D 4 HOH A 110 609 609 HOH HOH . D 4 HOH A 111 610 610 HOH HOH . D 4 HOH A 112 611 611 HOH HOH . D 4 HOH A 113 612 612 HOH HOH . D 4 HOH A 114 613 613 HOH HOH . D 4 HOH A 115 614 614 HOH HOH . D 4 HOH A 116 615 615 HOH HOH . D 4 HOH A 117 616 616 HOH HOH . D 4 HOH A 118 617 617 HOH HOH . D 4 HOH A 119 618 618 HOH HOH . D 4 HOH A 120 619 619 HOH HOH . D 4 HOH A 121 620 620 HOH HOH . D 4 HOH A 122 621 621 HOH HOH . D 4 HOH A 123 622 622 HOH HOH . D 4 HOH A 124 623 623 HOH HOH . D 4 HOH A 125 624 624 HOH HOH . D 4 HOH A 126 625 625 HOH HOH . D 4 HOH A 127 626 626 HOH HOH . D 4 HOH A 128 627 627 HOH HOH . D 4 HOH A 129 628 628 HOH HOH . D 4 HOH A 130 629 629 HOH HOH . D 4 HOH A 131 630 630 HOH HOH . D 4 HOH A 132 631 631 HOH HOH . D 4 HOH A 133 632 632 HOH HOH . D 4 HOH A 134 633 633 HOH HOH . D 4 HOH A 135 634 634 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 -130.415 3.999 63.948 1 6.01 ? N1 PLP 409 A 1 HETATM 2 C C2 PLP . . . B 2 -131.075 4.699 62.978 1 5.86 ? C2 PLP 409 A 1 HETATM 3 C C2A PLP . . . B 2 -130.424 5.019 61.731 1 2 ? C2A PLP 409 A 1 HETATM 4 C C3 PLP . . . B 2 -132.35 5.102 63.203 1 7.79 ? C3 PLP 409 A 1 HETATM 5 O O3 PLP . . . B 2 -133.013 5.816 62.322 1 14.91 ? O3 PLP 409 A 1 HETATM 6 C C4 PLP . . . B 2 -132.931 4.791 64.422 1 9.29 ? C4 PLP 409 A 1 HETATM 7 C C4A PLP . . . B 2 -134.313 5.284 64.701 1 8.42 ? C4A PLP 409 A 1 HETATM 8 C C5 PLP . . . B 2 -132.219 3.996 65.348 1 3.86 ? C5 PLP 409 A 1 HETATM 9 C C6 PLP . . . B 2 -130.959 3.607 65.097 1 8.51 ? C6 PLP 409 A 1 HETATM 10 C C5A PLP . . . B 2 -132.831 3.626 66.726 1 2.73 ? C5A PLP 409 A 1 HETATM 11 O O4P PLP . . . B 2 -134.12 3.439 66.744 1 7.4 ? O4P PLP 409 A 1 HETATM 12 P P PLP . . . B 2 -134.879 3.553 68.135 1 4.82 ? P PLP 409 A 1 HETATM 13 O O1P PLP . . . B 2 -135.833 2.403 68.021 1 10.1 ? O1P PLP 409 A 1 HETATM 14 O O2P PLP . . . B 2 -133.822 3.433 69.148 1 7.38 ? O2P PLP 409 A 1 HETATM 15 O O3P PLP . . . B 2 -135.553 4.877 68.099 1 9.89 ? O3P PLP 409 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 15 #