data_1ASL # _model_server_result.job_id 7m0Ytabo4R2HCHveBJHgpg _model_server_result.datetime_utc '2024-11-25 09:56:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1asl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":410}' # _entry.id 1ASL # _exptl.entry_id 1ASL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.272 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.6 _cell.angle_gamma 90 _cell.entry_id 1ASL _cell.length_a 85.6 _cell.length_b 78.8 _cell.length_c 89.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ASL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C13 H19 N2 O9 P' _chem_comp.formula_weight 378.272 _chem_comp.id PLA _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-PYRIDOXYL-2-METHYLASPARTIC ACID-5-MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLA doub 260 n y N1 C6 PLA sing 261 n y C2 C2A PLA sing 262 n n C2 C3 PLA sing 263 n y C2A H2A1 PLA sing 264 n n C2A H2A2 PLA sing 265 n n C2A H2A3 PLA sing 266 n n C3 O3 PLA sing 267 n n C3 C4 PLA doub 268 n y O3 HO3 PLA sing 269 n n C4 C4A PLA sing 270 n n C4 C5 PLA sing 271 n y C4A N PLA sing 272 n n C4A H4A1 PLA sing 273 n n C4A H4A2 PLA sing 274 n n C5 C6 PLA doub 275 n y C5 C5A PLA sing 276 n n C6 H6 PLA sing 277 n n C5A O4P PLA sing 278 n n C5A H5A1 PLA sing 279 n n C5A H5A2 PLA sing 280 n n O4P P PLA sing 281 n n P O1P PLA doub 282 n n P O2P PLA sing 283 n n P O3P PLA sing 284 n n O2P HOP2 PLA sing 285 n n O3P HOP3 PLA sing 286 n n N CA PLA sing 287 n n N HN PLA sing 288 n n CA CB1 PLA sing 289 n n CA CB2 PLA sing 290 n n CA C PLA sing 291 n n CB1 CG PLA sing 292 n n CB1 HB11 PLA sing 293 n n CB1 HB12 PLA sing 294 n n CB2 HB21 PLA sing 295 n n CB2 HB22 PLA sing 296 n n CB2 HB23 PLA sing 297 n n CG OD1 PLA doub 298 n n CG OD2 PLA sing 299 n n OD2 HOD PLA sing 300 n n C O PLA doub 301 n n C OXT PLA sing 302 n n OXT HXT PLA sing 303 n n # _atom_sites.entry_id 1ASL _atom_sites.fract_transf_matrix[1][1] 0.011682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006369 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLA A 1 410 410 PLA AMA . D 2 PLA B 1 410 410 PLA AMA . E 3 HOH A 1 411 2 HOH HOH . E 3 HOH A 2 412 4 HOH HOH . E 3 HOH A 3 413 5 HOH HOH . E 3 HOH A 4 414 7 HOH HOH . E 3 HOH A 5 415 8 HOH HOH . E 3 HOH A 6 416 10 HOH HOH . E 3 HOH A 7 417 12 HOH HOH . E 3 HOH A 8 418 13 HOH HOH . E 3 HOH A 9 419 14 HOH HOH . E 3 HOH A 10 420 15 HOH HOH . E 3 HOH A 11 421 16 HOH HOH . E 3 HOH A 12 422 21 HOH HOH . E 3 HOH A 13 423 22 HOH HOH . E 3 HOH A 14 424 24 HOH HOH . E 3 HOH A 15 425 33 HOH HOH . E 3 HOH A 16 426 34 HOH HOH . E 3 HOH A 17 427 35 HOH HOH . E 3 HOH A 18 428 36 HOH HOH . E 3 HOH A 19 429 42 HOH HOH . E 3 HOH A 20 430 44 HOH HOH . E 3 HOH A 21 431 45 HOH HOH . E 3 HOH A 22 432 48 HOH HOH . E 3 HOH A 23 433 49 HOH HOH . E 3 HOH A 24 434 51 HOH HOH . E 3 HOH A 25 435 52 HOH HOH . E 3 HOH A 26 436 54 HOH HOH . E 3 HOH A 27 437 55 HOH HOH . E 3 HOH A 28 438 56 HOH HOH . E 3 HOH A 29 439 59 HOH HOH . E 3 HOH A 30 440 63 HOH HOH . E 3 HOH A 31 441 68 HOH HOH . E 3 HOH A 32 442 69 HOH HOH . E 3 HOH A 33 443 70 HOH HOH . E 3 HOH A 34 444 71 HOH HOH . E 3 HOH A 35 445 73 HOH HOH . E 3 HOH A 36 446 76 HOH HOH . E 3 HOH A 37 447 77 HOH HOH . E 3 HOH A 38 448 80 HOH HOH . E 3 HOH A 39 449 81 HOH HOH . E 3 HOH A 40 450 82 HOH HOH . E 3 HOH A 41 451 83 HOH HOH . E 3 HOH A 42 452 84 HOH HOH . E 3 HOH A 43 453 85 HOH HOH . E 3 HOH A 44 454 88 HOH HOH . E 3 HOH A 45 455 89 HOH HOH . E 3 HOH A 46 456 91 HOH HOH . E 3 HOH A 47 457 92 HOH HOH . E 3 HOH A 48 458 94 HOH HOH . E 3 HOH A 49 459 95 HOH HOH . E 3 HOH A 50 460 99 HOH HOH . E 3 HOH A 51 461 100 HOH HOH . E 3 HOH A 52 462 102 HOH HOH . E 3 HOH A 53 463 113 HOH HOH . E 3 HOH A 54 464 115 HOH HOH . E 3 HOH A 55 465 116 HOH HOH . E 3 HOH A 56 466 117 HOH HOH . E 3 HOH A 57 467 120 HOH HOH . E 3 HOH A 58 468 122 HOH HOH . E 3 HOH A 59 469 124 HOH HOH . E 3 HOH A 60 470 125 HOH HOH . E 3 HOH A 61 471 126 HOH HOH . E 3 HOH A 62 472 128 HOH HOH . E 3 HOH A 63 473 130 HOH HOH . E 3 HOH A 64 474 147 HOH HOH . E 3 HOH A 65 475 149 HOH HOH . E 3 HOH A 66 476 152 HOH HOH . E 3 HOH A 67 477 153 HOH HOH . E 3 HOH A 68 478 154 HOH HOH . E 3 HOH A 69 479 155 HOH HOH . E 3 HOH A 70 480 157 HOH HOH . E 3 HOH A 71 481 164 HOH HOH . E 3 HOH A 72 482 174 HOH HOH . E 3 HOH A 73 483 176 HOH HOH . E 3 HOH A 74 484 182 HOH HOH . E 3 HOH A 75 485 184 HOH HOH . E 3 HOH A 76 486 188 HOH HOH . E 3 HOH A 77 487 190 HOH HOH . E 3 HOH A 78 488 192 HOH HOH . E 3 HOH A 79 489 195 HOH HOH . E 3 HOH A 80 490 198 HOH HOH . E 3 HOH A 81 491 199 HOH HOH . E 3 HOH A 82 492 201 HOH HOH . E 3 HOH A 83 493 202 HOH HOH . E 3 HOH A 84 494 208 HOH HOH . E 3 HOH A 85 495 212 HOH HOH . E 3 HOH A 86 496 213 HOH HOH . E 3 HOH A 87 497 214 HOH HOH . E 3 HOH A 88 498 215 HOH HOH . E 3 HOH A 89 499 216 HOH HOH . E 3 HOH A 90 500 222 HOH HOH . E 3 HOH A 91 501 224 HOH HOH . E 3 HOH A 92 502 225 HOH HOH . E 3 HOH A 93 503 227 HOH HOH . E 3 HOH A 94 504 228 HOH HOH . E 3 HOH A 95 505 229 HOH HOH . E 3 HOH A 96 506 231 HOH HOH . E 3 HOH A 97 507 235 HOH HOH . E 3 HOH A 98 508 236 HOH HOH . E 3 HOH A 99 509 240 HOH HOH . E 3 HOH A 100 510 243 HOH HOH . E 3 HOH A 101 511 247 HOH HOH . E 3 HOH A 102 512 248 HOH HOH . E 3 HOH A 103 513 253 HOH HOH . E 3 HOH A 104 514 254 HOH HOH . E 3 HOH A 105 515 257 HOH HOH . E 3 HOH A 106 516 258 HOH HOH . E 3 HOH A 107 517 259 HOH HOH . E 3 HOH A 108 518 261 HOH HOH . E 3 HOH A 109 519 263 HOH HOH . E 3 HOH A 110 520 266 HOH HOH . E 3 HOH A 111 521 269 HOH HOH . E 3 HOH A 112 522 270 HOH HOH . E 3 HOH A 113 523 273 HOH HOH . F 3 HOH B 1 411 1 HOH HOH . F 3 HOH B 2 412 3 HOH HOH . F 3 HOH B 3 413 6 HOH HOH . F 3 HOH B 4 414 9 HOH HOH . F 3 HOH B 5 415 11 HOH HOH . F 3 HOH B 6 416 17 HOH HOH . F 3 HOH B 7 417 18 HOH HOH . F 3 HOH B 8 418 19 HOH HOH . F 3 HOH B 9 419 23 HOH HOH . F 3 HOH B 10 420 25 HOH HOH . F 3 HOH B 11 421 26 HOH HOH . F 3 HOH B 12 422 27 HOH HOH . F 3 HOH B 13 423 28 HOH HOH . F 3 HOH B 14 424 29 HOH HOH . F 3 HOH B 15 425 30 HOH HOH . F 3 HOH B 16 426 31 HOH HOH . F 3 HOH B 17 427 37 HOH HOH . F 3 HOH B 18 428 38 HOH HOH . F 3 HOH B 19 429 39 HOH HOH . F 3 HOH B 20 430 40 HOH HOH . F 3 HOH B 21 431 43 HOH HOH . F 3 HOH B 22 432 46 HOH HOH . F 3 HOH B 23 433 47 HOH HOH . F 3 HOH B 24 434 50 HOH HOH . F 3 HOH B 25 435 53 HOH HOH . F 3 HOH B 26 436 57 HOH HOH . F 3 HOH B 27 437 58 HOH HOH . F 3 HOH B 28 438 60 HOH HOH . F 3 HOH B 29 439 62 HOH HOH . F 3 HOH B 30 440 64 HOH HOH . F 3 HOH B 31 441 65 HOH HOH . F 3 HOH B 32 442 66 HOH HOH . F 3 HOH B 33 443 67 HOH HOH . F 3 HOH B 34 444 74 HOH HOH . F 3 HOH B 35 445 75 HOH HOH . F 3 HOH B 36 446 78 HOH HOH . F 3 HOH B 37 447 79 HOH HOH . F 3 HOH B 38 448 86 HOH HOH . F 3 HOH B 39 449 87 HOH HOH . F 3 HOH B 40 450 90 HOH HOH . F 3 HOH B 41 451 96 HOH HOH . F 3 HOH B 42 452 98 HOH HOH . F 3 HOH B 43 453 103 HOH HOH . F 3 HOH B 44 454 104 HOH HOH . F 3 HOH B 45 455 107 HOH HOH . F 3 HOH B 46 456 108 HOH HOH . F 3 HOH B 47 457 109 HOH HOH . F 3 HOH B 48 458 110 HOH HOH . F 3 HOH B 49 459 111 HOH HOH . F 3 HOH B 50 460 112 HOH HOH . F 3 HOH B 51 461 114 HOH HOH . F 3 HOH B 52 462 118 HOH HOH . F 3 HOH B 53 463 119 HOH HOH . F 3 HOH B 54 464 121 HOH HOH . F 3 HOH B 55 465 129 HOH HOH . F 3 HOH B 56 466 133 HOH HOH . F 3 HOH B 57 467 134 HOH HOH . F 3 HOH B 58 468 136 HOH HOH . F 3 HOH B 59 469 138 HOH HOH . F 3 HOH B 60 470 140 HOH HOH . F 3 HOH B 61 471 142 HOH HOH . F 3 HOH B 62 472 144 HOH HOH . F 3 HOH B 63 473 148 HOH HOH . F 3 HOH B 64 474 159 HOH HOH . F 3 HOH B 65 475 167 HOH HOH . F 3 HOH B 66 476 171 HOH HOH . F 3 HOH B 67 477 173 HOH HOH . F 3 HOH B 68 478 181 HOH HOH . F 3 HOH B 69 479 185 HOH HOH . F 3 HOH B 70 480 191 HOH HOH . F 3 HOH B 71 481 200 HOH HOH . F 3 HOH B 72 482 203 HOH HOH . F 3 HOH B 73 483 204 HOH HOH . F 3 HOH B 74 484 205 HOH HOH . F 3 HOH B 75 485 206 HOH HOH . F 3 HOH B 76 486 211 HOH HOH . F 3 HOH B 77 487 217 HOH HOH . F 3 HOH B 78 488 218 HOH HOH . F 3 HOH B 79 489 219 HOH HOH . F 3 HOH B 80 490 220 HOH HOH . F 3 HOH B 81 491 221 HOH HOH . F 3 HOH B 82 492 223 HOH HOH . F 3 HOH B 83 493 226 HOH HOH . F 3 HOH B 84 494 232 HOH HOH . F 3 HOH B 85 495 233 HOH HOH . F 3 HOH B 86 496 234 HOH HOH . F 3 HOH B 87 497 237 HOH HOH . F 3 HOH B 88 498 241 HOH HOH . F 3 HOH B 89 499 242 HOH HOH . F 3 HOH B 90 500 244 HOH HOH . F 3 HOH B 91 501 245 HOH HOH . F 3 HOH B 92 502 246 HOH HOH . F 3 HOH B 93 503 249 HOH HOH . F 3 HOH B 94 504 250 HOH HOH . F 3 HOH B 95 505 251 HOH HOH . F 3 HOH B 96 506 252 HOH HOH . F 3 HOH B 97 507 255 HOH HOH . F 3 HOH B 98 508 256 HOH HOH . F 3 HOH B 99 509 260 HOH HOH . F 3 HOH B 100 510 262 HOH HOH . F 3 HOH B 101 511 264 HOH HOH . F 3 HOH B 102 512 265 HOH HOH . F 3 HOH B 103 513 267 HOH HOH . F 3 HOH B 104 514 268 HOH HOH . F 3 HOH B 105 515 271 HOH HOH . F 3 HOH B 106 516 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLA . . . D 2 3.928 26.688 26.481 1 27.93 ? N1 PLA 410 B 1 HETATM 2 C C2 PLA . . . D 2 5.082 26.042 26.131 1 15.08 ? C2 PLA 410 B 1 HETATM 3 C C2A PLA . . . D 2 5.26 24.626 26.629 1 76.01 ? C2A PLA 410 B 1 HETATM 4 C C3 PLA . . . D 2 5.934 26.764 25.268 1 15.14 ? C3 PLA 410 B 1 HETATM 5 O O3 PLA . . . D 2 7.081 26.185 24.883 1 10.04 ? O3 PLA 410 B 1 HETATM 6 C C4 PLA . . . D 2 5.653 28.01 24.873 1 14.19 ? C4 PLA 410 B 1 HETATM 7 C C4A PLA . . . D 2 6.715 28.658 24.172 1 32.91 ? C4A PLA 410 B 1 HETATM 8 C C5 PLA . . . D 2 4.444 28.615 25.349 1 20.91 ? C5 PLA 410 B 1 HETATM 9 C C6 PLA . . . D 2 3.558 27.913 26.11 1 23.4 ? C6 PLA 410 B 1 HETATM 10 C C5A PLA . . . D 2 4.03 30.036 24.965 1 49.42 ? C5A PLA 410 B 1 HETATM 11 O O4P PLA . . . D 2 4.345 30.321 23.652 1 15.59 ? O4P PLA 410 B 1 HETATM 12 P P PLA . . . D 2 3.898 31.603 22.843 1 26.51 ? P PLA 410 B 1 HETATM 13 O O1P PLA . . . D 2 5.076 31.819 21.986 1 14.52 ? O1P PLA 410 B 1 HETATM 14 O O2P PLA . . . D 2 3.654 32.988 23.615 1 9.27 ? O2P PLA 410 B 1 HETATM 15 O O3P PLA . . . D 2 2.557 31.188 22.377 1 20.69 ? O3P PLA 410 B 1 HETATM 16 N N PLA . . . D 2 8.035 28.237 24.548 1 13.08 ? N PLA 410 B 1 HETATM 17 C CA PLA . . . D 2 9.154 28.131 23.579 1 35.31 ? CA PLA 410 B 1 HETATM 18 C CB1 PLA . . . D 2 9.771 29.483 23.393 1 24.04 ? CB1 PLA 410 B 1 HETATM 19 C CB2 PLA . . . D 2 8.703 27.453 22.289 1 14.47 ? CB2 PLA 410 B 1 HETATM 20 C CG PLA . . . D 2 9.993 30.111 24.744 1 38.16 ? CG PLA 410 B 1 HETATM 21 O OD1 PLA . . . D 2 10.992 29.747 25.391 1 43.96 ? OD1 PLA 410 B 1 HETATM 22 O OD2 PLA . . . D 2 9.174 30.975 25.138 1 37.65 ? OD2 PLA 410 B 1 HETATM 23 C C PLA . . . D 2 10.248 27.309 24.196 1 13.97 ? C PLA 410 B 1 HETATM 24 O O PLA . . . D 2 11.42 27.419 23.724 1 39.37 ? O PLA 410 B 1 HETATM 25 O OXT PLA . . . D 2 9.902 26.499 25.087 1 48.61 ? OXT PLA 410 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #