data_1AT3 # _model_server_result.job_id yRwdNtMY2I7yRlhFvXPs2g _model_server_result.datetime_utc '2024-11-07 08:54:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1at3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1AT3 # _exptl.entry_id 1AT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.155 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIISOPROPYL PHOSPHONATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AT3 _cell.length_a 71.72 _cell.length_b 87.43 _cell.length_c 77.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.72 87.43 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 129 A SER 129 1_555 C P DFP . A DFP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? covale ? covale2 B OG SER 129 B SER 129 1_555 D P DFP . B DFP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? # _chem_comp.formula 'C6 H15 O3 P' _chem_comp.formula_weight 166.155 _chem_comp.id DFP _chem_comp.mon_nstd_flag . _chem_comp.name 'DIISOPROPYL PHOSPHONATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DFP sing 83 n n C1 C3 DFP sing 84 n n C1 O1P DFP sing 85 n n C1 H1 DFP sing 86 n n C2 H21 DFP sing 87 n n C2 H22 DFP sing 88 n n C2 H23 DFP sing 89 n n C3 H31 DFP sing 90 n n C3 H32 DFP sing 91 n n C3 H33 DFP sing 92 n n C1' C2' DFP sing 93 n n C1' C3' DFP sing 94 n n C1' O2P DFP sing 95 n n C1' H1' DFP sing 96 n n C2' "H2'1" DFP sing 97 n n C2' "H2'2" DFP sing 98 n n C2' "H2'3" DFP sing 99 n n C3' "H3'1" DFP sing 100 n n C3' "H3'2" DFP sing 101 n n C3' "H3'3" DFP sing 102 n n P O1P DFP sing 103 n n P O2P DFP sing 104 n n P O3P DFP doub 105 n n HP1 P DFP sing 106 n n # _atom_sites.entry_id 1AT3 _atom_sites.fract_transf_matrix[1][1] 0.013943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DFP A 1 300 300 DFP DFP . D 2 DFP B 1 300 300 DFP DFP . E 3 HOH A 1 301 301 HOH HOH . E 3 HOH A 2 302 302 HOH HOH . E 3 HOH A 3 303 303 HOH HOH . E 3 HOH A 4 304 304 HOH HOH . E 3 HOH A 5 305 305 HOH HOH . E 3 HOH A 6 306 306 HOH HOH . E 3 HOH A 7 307 307 HOH HOH . E 3 HOH A 8 308 308 HOH HOH . E 3 HOH A 9 309 309 HOH HOH . E 3 HOH A 10 310 310 HOH HOH . E 3 HOH A 11 313 313 HOH HOH . E 3 HOH A 12 316 316 HOH HOH . E 3 HOH A 13 317 317 HOH HOH . E 3 HOH A 14 318 318 HOH HOH . E 3 HOH A 15 319 319 HOH HOH . E 3 HOH A 16 320 320 HOH HOH . E 3 HOH A 17 321 321 HOH HOH . E 3 HOH A 18 324 324 HOH HOH . E 3 HOH A 19 325 325 HOH HOH . E 3 HOH A 20 326 326 HOH HOH . E 3 HOH A 21 327 327 HOH HOH . E 3 HOH A 22 332 332 HOH HOH . E 3 HOH A 23 335 335 HOH HOH . E 3 HOH A 24 336 336 HOH HOH . E 3 HOH A 25 338 338 HOH HOH . E 3 HOH A 26 340 340 HOH HOH . E 3 HOH A 27 341 341 HOH HOH . E 3 HOH A 28 342 342 HOH HOH . F 3 HOH B 1 311 311 HOH HOH . F 3 HOH B 2 312 312 HOH HOH . F 3 HOH B 3 314 314 HOH HOH . F 3 HOH B 4 315 315 HOH HOH . F 3 HOH B 5 322 322 HOH HOH . F 3 HOH B 6 323 323 HOH HOH . F 3 HOH B 7 328 328 HOH HOH . F 3 HOH B 8 329 329 HOH HOH . F 3 HOH B 9 330 330 HOH HOH . F 3 HOH B 10 331 331 HOH HOH . F 3 HOH B 11 333 333 HOH HOH . F 3 HOH B 12 334 334 HOH HOH . F 3 HOH B 13 337 337 HOH HOH . F 3 HOH B 14 339 339 HOH HOH . F 3 HOH B 15 343 343 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DFP . . . C 2 30.226 17.113 9.752 1 10.71 ? C1 DFP 300 A 1 HETATM 2 C C2 DFP . . . C 2 30.679 16.036 10.741 1 11.64 ? C2 DFP 300 A 1 HETATM 3 C C3 DFP . . . C 2 29.405 18.197 10.462 1 2 ? C3 DFP 300 A 1 HETATM 4 C C1' DFP . . . C 2 31.769 15.9 5.468 1 5.88 ? C1' DFP 300 A 1 HETATM 5 C C2' DFP . . . C 2 30.614 14.989 5.035 1 10.05 ? C2' DFP 300 A 1 HETATM 6 C C3' DFP . . . C 2 33.106 15.201 5.285 1 10.92 ? C3' DFP 300 A 1 HETATM 7 P P DFP . . . C 2 31.695 17.762 7.461 1 8.79 ? P DFP 300 A 1 HETATM 8 O O1P DFP . . . C 2 31.372 17.687 9.055 1 11.54 ? O1P DFP 300 A 1 HETATM 9 O O2P DFP . . . C 2 31.616 16.285 6.832 1 7.78 ? O2P DFP 300 A 1 HETATM 10 O O3P DFP . . . C 2 33.031 18.359 7.26 1 17.04 ? O3P DFP 300 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #