data_1AT5
#
_model_server_result.job_id            CmWcMgEzQDbtb7CG9RqCIA 
_model_server_result.datetime_utc      '2025-03-06 00:21:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1at5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":140}' 
#
_entry.id    1AT5 
#
_exptl.entry_id    1AT5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1AT5 
_cell.length_a            78.61 
_cell.length_b            78.61 
_cell.length_c            38.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AT5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG ? 132 NAG 
2 n B NAG 2 B 2 NAG ? 131 NAG 
2 n B NAG 3 B 3 NAG ? 130 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 A C SER 100 A SER 100 1_555 A N SNN 101 A SNN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A N1 SNN 101 A SNN 101 1_555 A CA GLY 102 A GLY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale3 A C GLY 102 A GLY 102 1_555 A N ASN 103 A ASN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? 
covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 C NA NA . A NA 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 C NA NA . A NA 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 C NA NA . A NA 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 C NA NA . A NA 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc5 C NA NA . A NA 140 1_555 E O HOH . A HOH 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc6 C NA NA . A NA 140 1_555 E O HOH . A HOH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1AT5 
_atom_sites.fract_transf_matrix[1][1]    0.012721 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012721 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NA A 1 140 140 NA NA . 
D 4 CL A 1 141 141 CL CL . 
E 5 HOH A 1 142 142 HOH HOH . 
E 5 HOH A 2 143 143 HOH HOH . 
E 5 HOH A 3 144 144 HOH HOH . 
E 5 HOH A 4 145 145 HOH HOH . 
E 5 HOH A 5 146 146 HOH HOH . 
E 5 HOH A 6 147 147 HOH HOH . 
E 5 HOH A 7 148 148 HOH HOH . 
E 5 HOH A 8 149 149 HOH HOH . 
E 5 HOH A 9 150 150 HOH HOH . 
E 5 HOH A 10 151 151 HOH HOH . 
E 5 HOH A 11 152 152 HOH HOH . 
E 5 HOH A 12 153 153 HOH HOH . 
E 5 HOH A 13 154 154 HOH HOH . 
E 5 HOH A 14 155 155 HOH HOH . 
E 5 HOH A 15 156 156 HOH HOH . 
E 5 HOH A 16 157 157 HOH HOH . 
E 5 HOH A 17 158 158 HOH HOH . 
E 5 HOH A 18 159 159 HOH HOH . 
E 5 HOH A 19 160 160 HOH HOH . 
E 5 HOH A 20 161 161 HOH HOH . 
E 5 HOH A 21 162 162 HOH HOH . 
E 5 HOH A 22 163 163 HOH HOH . 
E 5 HOH A 23 164 164 HOH HOH . 
E 5 HOH A 24 165 165 HOH HOH . 
E 5 HOH A 25 166 166 HOH HOH . 
E 5 HOH A 26 167 167 HOH HOH . 
E 5 HOH A 27 168 168 HOH HOH . 
E 5 HOH A 28 169 169 HOH HOH . 
E 5 HOH A 29 170 170 HOH HOH . 
E 5 HOH A 30 171 171 HOH HOH . 
E 5 HOH A 31 172 172 HOH HOH . 
E 5 HOH A 32 173 173 HOH HOH . 
E 5 HOH A 33 174 174 HOH HOH . 
E 5 HOH A 34 175 175 HOH HOH . 
E 5 HOH A 35 176 176 HOH HOH . 
E 5 HOH A 36 177 177 HOH HOH . 
E 5 HOH A 37 178 178 HOH HOH . 
E 5 HOH A 38 179 179 HOH HOH . 
E 5 HOH A 39 180 180 HOH HOH . 
E 5 HOH A 40 181 181 HOH HOH . 
E 5 HOH A 41 182 182 HOH HOH . 
E 5 HOH A 42 183 183 HOH HOH . 
E 5 HOH A 43 184 184 HOH HOH . 
E 5 HOH A 44 185 185 HOH HOH . 
E 5 HOH A 45 186 186 HOH HOH . 
E 5 HOH A 46 187 187 HOH HOH . 
E 5 HOH A 47 188 188 HOH HOH . 
E 5 HOH A 48 189 189 HOH HOH . 
E 5 HOH A 49 190 190 HOH HOH . 
E 5 HOH A 50 191 191 HOH HOH . 
E 5 HOH A 51 192 192 HOH HOH . 
E 5 HOH A 52 193 193 HOH HOH . 
E 5 HOH A 53 194 194 HOH HOH . 
E 5 HOH A 54 195 195 HOH HOH . 
E 5 HOH A 55 196 196 HOH HOH . 
E 5 HOH A 56 197 197 HOH HOH . 
E 5 HOH A 57 198 198 HOH HOH . 
E 5 HOH A 58 199 199 HOH HOH . 
E 5 HOH A 59 200 200 HOH HOH . 
E 5 HOH A 60 201 201 HOH HOH . 
E 5 HOH A 61 202 202 HOH HOH . 
E 5 HOH A 62 203 203 HOH HOH . 
E 5 HOH A 63 204 204 HOH HOH . 
E 5 HOH A 64 205 205 HOH HOH . 
E 5 HOH A 65 206 206 HOH HOH . 
E 5 HOH A 66 207 207 HOH HOH . 
E 5 HOH A 67 208 208 HOH HOH . 
E 5 HOH A 68 209 209 HOH HOH . 
E 5 HOH A 69 210 210 HOH HOH . 
E 5 HOH A 70 211 211 HOH HOH . 
E 5 HOH A 71 212 212 HOH HOH . 
E 5 HOH A 72 213 213 HOH HOH . 
E 5 HOH A 73 214 214 HOH HOH . 
E 5 HOH A 74 215 215 HOH HOH . 
E 5 HOH A 75 216 216 HOH HOH . 
E 5 HOH A 76 217 217 HOH HOH . 
E 5 HOH A 77 218 218 HOH HOH . 
E 5 HOH A 78 219 219 HOH HOH . 
E 5 HOH A 79 220 220 HOH HOH . 
E 5 HOH A 80 221 221 HOH HOH . 
E 5 HOH A 81 222 222 HOH HOH . 
E 5 HOH A 82 223 223 HOH HOH . 
E 5 HOH A 83 224 224 HOH HOH . 
E 5 HOH A 84 225 225 HOH HOH . 
E 5 HOH A 85 226 226 HOH HOH . 
E 5 HOH A 86 227 227 HOH HOH . 
E 5 HOH A 87 228 228 HOH HOH . 
E 5 HOH A 88 229 229 HOH HOH . 
E 5 HOH A 89 230 230 HOH HOH . 
E 5 HOH A 90 231 231 HOH HOH . 
E 5 HOH A 91 232 232 HOH HOH . 
E 5 HOH A 92 233 233 HOH HOH . 
E 5 HOH A 93 234 234 HOH HOH . 
E 5 HOH A 94 235 235 HOH HOH . 
E 5 HOH A 95 236 236 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               7.659 
_atom_site.Cartn_y               14.713 
_atom_site.Cartn_z               32.488 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        38.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           140 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#