data_1ATK # _model_server_result.job_id hIZQ1aFUsSiau0kuXgiEzg _model_server_result.datetime_utc '2025-02-22 21:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1atk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":216}' # _entry.id 1ATK # _exptl.entry_id 1ATK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ATK _cell.length_a 38.4 _cell.length_b 50.7 _cell.length_c 104.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ATK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C2 E64 . A E64 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? # _chem_comp.formula 'C15 H30 N5 O5 1' _chem_comp.formula_weight 360.429 _chem_comp.id E64 _chem_comp.mon_nstd_flag . _chem_comp.name N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 E64 doub 83 n n C1 O2 E64 sing 84 n n C1 C2 E64 sing 85 n n O2 HO2 E64 sing 86 n n C2 C3 E64 sing 87 n n C2 H21 E64 sing 88 n n C2 H22 E64 sing 89 n n C3 O3 E64 sing 90 n n C3 C4 E64 sing 91 n n C3 H3 E64 sing 92 n n O3 HO3 E64 sing 93 n n C4 O4 E64 doub 94 n n C4 N1 E64 sing 95 n n N1 C6 E64 sing 96 n n N1 HN1 E64 sing 97 n n C6 C7 E64 sing 98 n n C6 C11 E64 sing 99 n n C6 H6 E64 sing 100 n n C7 C8 E64 sing 101 n n C7 H71 E64 sing 102 n n C7 H72 E64 sing 103 n n C8 C9 E64 sing 104 n n C8 C10 E64 sing 105 n n C8 H8 E64 sing 106 n n C9 H91 E64 sing 107 n n C9 H92 E64 sing 108 n n C9 H93 E64 sing 109 n n C10 H101 E64 sing 110 n n C10 H102 E64 sing 111 n n C10 H103 E64 sing 112 n n C11 O5 E64 doub 113 n n C11 N2 E64 sing 114 n n N2 C12 E64 sing 115 n n N2 HN2 E64 sing 116 n n C12 C13 E64 sing 117 n n C12 H121 E64 sing 118 n n C12 H122 E64 sing 119 n n C13 C14 E64 sing 120 n n C13 H131 E64 sing 121 n n C13 H132 E64 sing 122 n n C14 C15 E64 sing 123 n n C14 H141 E64 sing 124 n n C14 H142 E64 sing 125 n n C15 N3 E64 sing 126 n n C15 H151 E64 sing 127 n n C15 H152 E64 sing 128 n n N3 C16 E64 sing 129 n n N3 HN3 E64 sing 130 n n C16 N4 E64 sing 131 n n C16 N5 E64 doub 132 n n N4 HN41 E64 sing 133 n n N4 HN42 E64 sing 134 n n N5 HN51 E64 sing 135 n n N5 HN52 E64 sing 136 n n # _atom_sites.entry_id 1ATK _atom_sites.fract_transf_matrix[1][1] 0.026042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E64 A 1 216 216 E64 E64 . C 3 HOH A 1 217 217 HOH HOH . C 3 HOH A 2 218 218 HOH HOH . C 3 HOH A 3 219 219 HOH HOH . C 3 HOH A 4 220 220 HOH HOH . C 3 HOH A 5 221 221 HOH HOH . C 3 HOH A 6 222 222 HOH HOH . C 3 HOH A 7 223 223 HOH HOH . C 3 HOH A 8 224 224 HOH HOH . C 3 HOH A 9 225 225 HOH HOH . C 3 HOH A 10 226 226 HOH HOH . C 3 HOH A 11 227 227 HOH HOH . C 3 HOH A 12 228 228 HOH HOH . C 3 HOH A 13 229 229 HOH HOH . C 3 HOH A 14 230 230 HOH HOH . C 3 HOH A 15 231 231 HOH HOH . C 3 HOH A 16 232 232 HOH HOH . C 3 HOH A 17 233 233 HOH HOH . C 3 HOH A 18 234 234 HOH HOH . C 3 HOH A 19 235 235 HOH HOH . C 3 HOH A 20 236 236 HOH HOH . C 3 HOH A 21 237 237 HOH HOH . C 3 HOH A 22 238 238 HOH HOH . C 3 HOH A 23 239 239 HOH HOH . C 3 HOH A 24 240 240 HOH HOH . C 3 HOH A 25 241 241 HOH HOH . C 3 HOH A 26 242 242 HOH HOH . C 3 HOH A 27 243 243 HOH HOH . C 3 HOH A 28 244 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E64 . . . B 2 -22.235 -18.146 58.599 1 5.52 ? C1 E64 216 A 1 HETATM 2 O O1 E64 . . . B 2 -23.014 -17.618 57.787 1 10.55 ? O1 E64 216 A 1 HETATM 3 O O2 E64 . . . B 2 -21.67 -17.512 59.502 1 5.11 ? O2 E64 216 A 1 HETATM 4 C C2 E64 . . . B 2 -21.998 -19.644 58.5 1 5.4 ? C2 E64 216 A 1 HETATM 5 C C3 E64 . . . B 2 -20.482 -19.923 58.621 1 6.63 ? C3 E64 216 A 1 HETATM 6 O O3 E64 . . . B 2 -19.843 -19.648 57.371 1 9.72 ? O3 E64 216 A 1 HETATM 7 C C4 E64 . . . B 2 -20.268 -21.398 58.894 1 7.22 ? C4 E64 216 A 1 HETATM 8 O O4 E64 . . . B 2 -19.855 -21.8 59.984 1 11.35 ? O4 E64 216 A 1 HETATM 9 N N1 E64 . . . B 2 -20.592 -22.202 57.892 1 8.79 ? N1 E64 216 A 1 HETATM 10 C C6 E64 . . . B 2 -20.492 -23.65 57.975 1 9.18 ? C6 E64 216 A 1 HETATM 11 C C7 E64 . . . B 2 -21.613 -24.271 57.139 1 9.22 ? C7 E64 216 A 1 HETATM 12 C C8 E64 . . . B 2 -22.17 -25.659 57.433 1 6.79 ? C8 E64 216 A 1 HETATM 13 C C9 E64 . . . B 2 -21.838 -26.586 56.27 1 6.81 ? C9 E64 216 A 1 HETATM 14 C C10 E64 . . . B 2 -21.694 -26.225 58.779 1 6.85 ? C10 E64 216 A 1 HETATM 15 C C11 E64 . . . B 2 -19.141 -24.152 57.478 1 12.22 ? C11 E64 216 A 1 HETATM 16 O O5 E64 . . . B 2 -18.666 -23.732 56.426 1 14.14 ? O5 E64 216 A 1 HETATM 17 N N2 E64 . . . B 2 -18.543 -25.075 58.23 1 14.77 ? N2 E64 216 A 1 HETATM 18 C C12 E64 . . . B 2 -17.262 -25.706 57.917 1 15.06 ? C12 E64 216 A 1 HETATM 19 C C13 E64 . . . B 2 -16.119 -24.714 57.751 1 17.63 ? C13 E64 216 A 1 HETATM 20 C C14 E64 . . . B 2 -14.778 -25.428 57.863 1 20.58 ? C14 E64 216 A 1 HETATM 21 C C15 E64 . . . B 2 -13.999 -24.959 59.101 1 23.07 ? C15 E64 216 A 1 HETATM 22 N N3 E64 . . . B 2 -13.186 -26.024 59.701 1 23.67 ? N3 E64 216 A 1 HETATM 23 C C16 E64 . . . B 2 -13.373 -26.523 60.924 1 22.95 ? C16 E64 216 A 1 HETATM 24 N N4 E64 . . . B 2 -13.065 -25.785 61.978 1 24.05 ? N4 E64 216 A 1 HETATM 25 N N5 E64 . . . B 2 -13.574 -27.828 61.086 1 22.75 ? N5 E64 216 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #