data_1ATN # _model_server_result.job_id bmHpkHHMw4EAjHd0Hpdc-g _model_server_result.datetime_utc '2024-11-12 21:33:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1atn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":373}' # _entry.id 1ATN # _exptl.entry_id 1ATN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ATN _cell.length_a 132.9 _cell.length_b 56.3 _cell.length_c 109.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ATN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 G N N ? 4 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG D 261 NDG 3 n C NAG 2 B 2 NAG D 262 NAG 3 n C BMA 3 B 3 BMA D 263 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 101 D CYS 101 1_555 B SG CYS 104 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 B SG CYS 173 D CYS 173 1_555 B SG CYS 209 D CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ASP 2 A ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale2 A C GLU 73 A GLU 72 1_555 A N HIC 74 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C HIC 74 A HIC 73 1_555 A N GLY 75 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 B ND2 ASN 18 D ASN 18 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale5 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? metalc ? metalc1 A OE1 GLN 138 A GLN 137 1_555 D CA CA . A CA 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc2 D CA CA . A CA 373 1_555 E O1B ATP . A ATP 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc3 D CA CA . A CA 373 1_555 E O2G ATP . A ATP 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 B OD1 ASP 99 D ASP 99 1_555 G CA CA . D CA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc5 B OD2 ASP 99 D ASP 99 1_555 G CA CA . D CA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 B O CYS 101 D CYS 101 1_555 G CA CA . D CA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc7 B OD2 ASP 107 D ASP 107 1_555 G CA CA . D CA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc8 B O PHE 109 D PHE 109 1_555 G CA CA . D CA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 B OE2 GLU 112 D GLU 112 1_555 G CA CA . D CA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc10 B OD2 ASP 172 D ASP 172 1_555 H CA CA . D CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc11 B O ASP 198 D ASP 198 1_555 H CA CA . D CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc12 B OD1 ASP 201 D ASP 201 1_555 F CA CA . D CA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc13 B OD2 ASP 201 D ASP 201 1_555 F CA CA . D CA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc14 B O THR 203 D THR 203 1_555 F CA CA . D CA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc15 B OG1 THR 203 D THR 203 1_555 F CA CA . D CA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc16 B O THR 205 D THR 205 1_555 F CA CA . D CA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc17 B O THR 207 D THR 207 1_555 F CA CA . D CA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ATN _atom_sites.fract_transf_matrix[1][1] 0.007524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 373 373 CA CA . E 5 ATP A 1 375 375 ATP ATP . F 4 CA D 1 264 264 CA CA . G 4 CA D 1 265 265 CA CA . H 4 CA D 1 266 266 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 94.454 _atom_site.Cartn_y 56.55 _atom_site.Cartn_z 67.891 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 373 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #