data_1ATP # _model_server_result.job_id JH5bqNXZk9OZJGYFFELItg _model_server_result.datetime_utc '2024-11-22 23:49:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1atp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":355}' # _entry.id 1ATP # _exptl.entry_id 1ATP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ATP _cell.length_a 73.58 _cell.length_b 76.28 _cell.length_c 80.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ATP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 E TRP 196 1_555 A N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C TPO 197 E TPO 197 1_555 A N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale3 A C VAL 337 E VAL 337 1_555 A N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C SEP 338 E SEP 338 1_555 A N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASN 171 E ASN 171 1_555 D MN MN . E MN 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A OD2 ASP 184 E ASP 184 1_555 C MN MN . E MN 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A OD1 ASP 184 E ASP 184 1_555 C MN MN . E MN 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc4 A OD2 ASP 184 E ASP 184 1_555 D MN MN . E MN 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 C MN MN . E MN 351 1_555 E O1B ATP . E ATP 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 C MN MN . E MN 351 1_555 E O3G ATP . E ATP 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc7 C MN MN . E MN 351 1_555 F O HOH . E HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc8 C MN MN . E MN 351 1_555 F O HOH . E HOH 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc9 D MN MN . E MN 352 1_555 E O2G ATP . E ATP 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc10 D MN MN . E MN 352 1_555 E O2A ATP . E ATP 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc11 D MN MN . E MN 352 1_555 F O HOH . E HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1ATP _atom_sites.fract_transf_matrix[1][1] 0.013591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN E 1 351 351 MN MN . D 3 MN E 1 352 352 MN MN . E 4 ATP E 1 355 355 ATP ATP . F 5 HOH E 1 400 400 HOH HOH . F 5 HOH E 2 402 402 HOH HOH . F 5 HOH E 3 403 403 HOH HOH . F 5 HOH E 4 404 404 HOH HOH . F 5 HOH E 5 405 405 HOH HOH . F 5 HOH E 6 406 406 HOH HOH . F 5 HOH E 7 407 407 HOH HOH . F 5 HOH E 8 408 408 HOH HOH . F 5 HOH E 9 410 410 HOH HOH . F 5 HOH E 10 411 411 HOH HOH . F 5 HOH E 11 412 412 HOH HOH . F 5 HOH E 12 414 414 HOH HOH . F 5 HOH E 13 415 415 HOH HOH . F 5 HOH E 14 416 416 HOH HOH . F 5 HOH E 15 417 417 HOH HOH . F 5 HOH E 16 419 419 HOH HOH . F 5 HOH E 17 420 420 HOH HOH . F 5 HOH E 18 423 423 HOH HOH . F 5 HOH E 19 424 424 HOH HOH . F 5 HOH E 20 425 425 HOH HOH . F 5 HOH E 21 427 427 HOH HOH . F 5 HOH E 22 428 428 HOH HOH . F 5 HOH E 23 429 429 HOH HOH . F 5 HOH E 24 430 430 HOH HOH . F 5 HOH E 25 431 431 HOH HOH . F 5 HOH E 26 432 432 HOH HOH . F 5 HOH E 27 434 434 HOH HOH . F 5 HOH E 28 439 439 HOH HOH . F 5 HOH E 29 440 440 HOH HOH . F 5 HOH E 30 442 442 HOH HOH . F 5 HOH E 31 443 443 HOH HOH . F 5 HOH E 32 444 444 HOH HOH . F 5 HOH E 33 445 445 HOH HOH . F 5 HOH E 34 446 446 HOH HOH . F 5 HOH E 35 447 447 HOH HOH . F 5 HOH E 36 449 449 HOH HOH . F 5 HOH E 37 450 450 HOH HOH . F 5 HOH E 38 458 458 HOH HOH . F 5 HOH E 39 462 462 HOH HOH . F 5 HOH E 40 463 463 HOH HOH . F 5 HOH E 41 464 464 HOH HOH . F 5 HOH E 42 465 465 HOH HOH . F 5 HOH E 43 466 466 HOH HOH . F 5 HOH E 44 467 467 HOH HOH . F 5 HOH E 45 468 468 HOH HOH . F 5 HOH E 46 469 469 HOH HOH . F 5 HOH E 47 470 470 HOH HOH . F 5 HOH E 48 473 473 HOH HOH . F 5 HOH E 49 477 477 HOH HOH . F 5 HOH E 50 478 478 HOH HOH . F 5 HOH E 51 480 480 HOH HOH . F 5 HOH E 52 489 489 HOH HOH . F 5 HOH E 53 492 492 HOH HOH . F 5 HOH E 54 510 510 HOH HOH . F 5 HOH E 55 514 514 HOH HOH . F 5 HOH E 56 524 524 HOH HOH . F 5 HOH E 57 527 527 HOH HOH . F 5 HOH E 58 535 535 HOH HOH . F 5 HOH E 59 539 539 HOH HOH . F 5 HOH E 60 548 548 HOH HOH . F 5 HOH E 61 561 561 HOH HOH . F 5 HOH E 62 568 568 HOH HOH . F 5 HOH E 63 569 569 HOH HOH . F 5 HOH E 64 570 570 HOH HOH . F 5 HOH E 65 571 571 HOH HOH . F 5 HOH E 66 573 573 HOH HOH . F 5 HOH E 67 576 576 HOH HOH . F 5 HOH E 68 579 579 HOH HOH . F 5 HOH E 69 586 586 HOH HOH . F 5 HOH E 70 587 587 HOH HOH . F 5 HOH E 71 588 588 HOH HOH . F 5 HOH E 72 589 589 HOH HOH . F 5 HOH E 73 590 590 HOH HOH . F 5 HOH E 74 593 593 HOH HOH . F 5 HOH E 75 595 595 HOH HOH . F 5 HOH E 76 596 596 HOH HOH . F 5 HOH E 77 597 597 HOH HOH . F 5 HOH E 78 598 598 HOH HOH . F 5 HOH E 79 599 599 HOH HOH . F 5 HOH E 80 605 605 HOH HOH . F 5 HOH E 81 626 626 HOH HOH . F 5 HOH E 82 635 635 HOH HOH . F 5 HOH E 83 658 658 HOH HOH . F 5 HOH E 84 659 659 HOH HOH . F 5 HOH E 85 675 675 HOH HOH . F 5 HOH E 86 681 681 HOH HOH . F 5 HOH E 87 683 683 HOH HOH . F 5 HOH E 88 684 684 HOH HOH . F 5 HOH E 89 689 689 HOH HOH . G 5 HOH I 1 421 421 HOH HOH . G 5 HOH I 2 422 422 HOH HOH . G 5 HOH I 3 448 448 HOH HOH . G 5 HOH I 4 459 459 HOH HOH . G 5 HOH I 5 460 460 HOH HOH . G 5 HOH I 6 471 471 HOH HOH . G 5 HOH I 7 472 472 HOH HOH . G 5 HOH I 8 474 474 HOH HOH . G 5 HOH I 9 475 475 HOH HOH . G 5 HOH I 10 476 476 HOH HOH . G 5 HOH I 11 479 479 HOH HOH . G 5 HOH I 12 491 491 HOH HOH . G 5 HOH I 13 522 522 HOH HOH . G 5 HOH I 14 523 523 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 16.223 8.151 -1.015 1 18.11 ? PG ATP 355 E 1 HETATM 2 O O1G ATP . . . E 4 17.55 8.536 -0.515 1 17.95 ? O1G ATP 355 E 1 HETATM 3 O O2G ATP . . . E 4 15.748 6.835 -0.427 1 15.57 ? O2G ATP 355 E 1 HETATM 4 O O3G ATP . . . E 4 16.255 8.014 -2.438 1 6.59 ? O3G ATP 355 E 1 HETATM 5 P PB ATP . . . E 4 14.471 10.52 -1.49 1 22.96 ? PB ATP 355 E 1 HETATM 6 O O1B ATP . . . E 4 13.929 9.92 -2.7 1 13.08 ? O1B ATP 355 E 1 HETATM 7 O O2B ATP . . . E 4 15.318 11.737 -1.637 1 19.59 ? O2B ATP 355 E 1 HETATM 8 O O3B ATP . . . E 4 15.196 9.363 -0.681 1 13.8 ? O3B ATP 355 E 1 HETATM 9 P PA ATP . . . E 4 11.968 9.868 -0.26 1 19.49 ? PA ATP 355 E 1 HETATM 10 O O1A ATP . . . E 4 11.1 9.88 -1.43 1 13.47 ? O1A ATP 355 E 1 HETATM 11 O O2A ATP . . . E 4 12.426 8.514 0.144 1 25 ? O2A ATP 355 E 1 HETATM 12 O O3A ATP . . . E 4 13.242 10.795 -0.567 1 21.72 ? O3A ATP 355 E 1 HETATM 13 O O5' ATP . . . E 4 11.333 10.591 1.011 1 14.92 ? O5' ATP 355 E 1 HETATM 14 C C5' ATP . . . E 4 12.092 10.373 2.227 1 58.54 ? C5' ATP 355 E 1 HETATM 15 C C4' ATP . . . E 4 11.238 9.922 3.406 1 15.72 ? C4' ATP 355 E 1 HETATM 16 O O4' ATP . . . E 4 10.003 10.681 3.386 1 30.04 ? O4' ATP 355 E 1 HETATM 17 C C3' ATP . . . E 4 10.722 8.498 3.395 1 9.26 ? C3' ATP 355 E 1 HETATM 18 O O3' ATP . . . E 4 11.705 7.533 3.717 1 33.78 ? O3' ATP 355 E 1 HETATM 19 C C2' ATP . . . E 4 9.56 8.606 4.401 1 1 ? C2' ATP 355 E 1 HETATM 20 O O2' ATP . . . E 4 9.942 8.562 5.764 1 48.53 ? O2' ATP 355 E 1 HETATM 21 C C1' ATP . . . E 4 8.988 9.957 4.085 1 12.71 ? C1' ATP 355 E 1 HETATM 22 N N9 ATP . . . E 4 7.778 9.924 3.236 1 19.15 ? N9 ATP 355 E 1 HETATM 23 C C8 ATP . . . E 4 7.884 9.906 1.879 1 45.84 ? C8 ATP 355 E 1 HETATM 24 N N7 ATP . . . E 4 6.731 9.904 1.248 1 35.77 ? N7 ATP 355 E 1 HETATM 25 C C5 ATP . . . E 4 5.796 9.977 2.253 1 24 ? C5 ATP 355 E 1 HETATM 26 C C6 ATP . . . E 4 4.373 10.039 2.244 1 26.67 ? C6 ATP 355 E 1 HETATM 27 N N6 ATP . . . E 4 3.616 10.001 1.128 1 31.35 ? N6 ATP 355 E 1 HETATM 28 N N1 ATP . . . E 4 3.756 10.034 3.445 1 19.73 ? N1 ATP 355 E 1 HETATM 29 C C2 ATP . . . E 4 4.499 10.076 4.582 1 28.79 ? C2 ATP 355 E 1 HETATM 30 N N3 ATP . . . E 4 5.825 10.053 4.705 1 18.18 ? N3 ATP 355 E 1 HETATM 31 C C4 ATP . . . E 4 6.425 9.873 3.496 1 37.89 ? C4 ATP 355 E 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #