data_1AU8 # _model_server_result.job_id k6pFx3hotfme8jdI-9h7sg _model_server_result.datetime_utc '2025-01-07 22:07:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1au8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1AU8 # _exptl.entry_id 1AU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.477 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-carboxypropanoyl)-L-valyl-N-[(1R)-5-amino-1-phosphonopentyl]-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AU8 _cell.length_a 40.23 _cell.length_b 63.46 _cell.length_c 80.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 187 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf3 A SG CYS 152 A CYS 168 1_555 A SG CYS 166 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 B P 0H8 . A 0H8 1 1_555 A OG SER 181 A SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? # _chem_comp.formula 'C19 H35 N4 O8 P' _chem_comp.formula_weight 478.477 _chem_comp.id 0H8 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-carboxypropanoyl)-L-valyl-N-[(1R)-5-amino-1-phosphonopentyl]-L-prolinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 0H8 doub 1 n n C1 O2 0H8 sing 2 n n C1 C2 0H8 sing 3 n n O2 HO2 0H8 sing 4 n n C2 C3 0H8 sing 5 n n C2 H21 0H8 sing 6 n n C2 H22 0H8 sing 7 n n C3 C4 0H8 sing 8 n n C3 H31 0H8 sing 9 n n C3 H32 0H8 sing 10 n n C4 O4 0H8 doub 11 n n C4 N 0H8 sing 12 n n N CA 0H8 sing 13 n n N H 0H8 sing 14 n n CA C 0H8 sing 15 n n CA CB 0H8 sing 16 n n CA HA 0H8 sing 17 n n C O 0H8 doub 18 n n C N1 0H8 sing 19 n n CB CG1 0H8 sing 20 n n CB CG2 0H8 sing 21 n n CB HB 0H8 sing 22 n n CG1 HG11 0H8 sing 23 n n CG1 HG12 0H8 sing 24 n n CG1 HG13 0H8 sing 25 n n CG2 HG21 0H8 sing 26 n n CG2 HG22 0H8 sing 27 n n CG2 HG23 0H8 sing 28 n n N1 CA1 0H8 sing 29 n n N1 CD 0H8 sing 30 n n CA1 C5 0H8 sing 31 n n CA1 CB1 0H8 sing 32 n n CA1 HA1 0H8 sing 33 n n C5 O3 0H8 doub 34 n n C5 N2 0H8 sing 35 n n CB1 CG 0H8 sing 36 n n CB1 HB2 0H8 sing 37 n n CB1 HB3 0H8 sing 38 n n CG CD 0H8 sing 39 n n CG HG2 0H8 sing 40 n n CG HG3 0H8 sing 41 n n CD HD2 0H8 sing 42 n n CD HD3 0H8 sing 43 n n N2 CA2 0H8 sing 44 n n N2 HN2 0H8 sing 45 n n CA2 P 0H8 sing 46 n n CA2 CB2 0H8 sing 47 n n CA2 HA2 0H8 sing 48 n n P O1P 0H8 doub 49 n n P O2P 0H8 sing 50 n n O2P HOP2 0H8 sing 51 n n CB2 CG3 0H8 sing 52 n n CB2 HB1 0H8 sing 53 n n CB2 HB21 0H8 sing 54 n n CG3 CD1 0H8 sing 55 n n CG3 HG1 0H8 sing 56 n n CG3 HG24 0H8 sing 57 n n CD1 CE 0H8 sing 58 n n CD1 HD1 0H8 sing 59 n n CD1 HD21 0H8 sing 60 n n CE NZ 0H8 sing 61 n n CE HE1 0H8 sing 62 n n CE HE2 0H8 sing 63 n n NZ HNZ1 0H8 sing 64 n n NZ HNZ2 0H8 sing 65 n n O8 P 0H8 sing 66 n n O8 H35 0H8 sing 67 n n # _atom_sites.entry_id 1AU8 _atom_sites.fract_transf_matrix[1][1] 0.024857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0H8 A 1 1 1 0H8 SIN . C 3 HOH A 1 245 1 HOH HOH . C 3 HOH A 2 246 2 HOH HOH . C 3 HOH A 3 247 3 HOH HOH . C 3 HOH A 4 248 4 HOH HOH . C 3 HOH A 5 249 5 HOH HOH . C 3 HOH A 6 250 6 HOH HOH . C 3 HOH A 7 251 7 HOH HOH . C 3 HOH A 8 252 8 HOH HOH . C 3 HOH A 9 253 9 HOH HOH . C 3 HOH A 10 254 10 HOH HOH . C 3 HOH A 11 255 11 HOH HOH . C 3 HOH A 12 256 12 HOH HOH . C 3 HOH A 13 257 13 HOH HOH . C 3 HOH A 14 258 14 HOH HOH . C 3 HOH A 15 259 15 HOH HOH . C 3 HOH A 16 260 16 HOH HOH . C 3 HOH A 17 261 17 HOH HOH . C 3 HOH A 18 262 18 HOH HOH . C 3 HOH A 19 263 19 HOH HOH . C 3 HOH A 20 264 20 HOH HOH . C 3 HOH A 21 265 21 HOH HOH . C 3 HOH A 22 266 22 HOH HOH . C 3 HOH A 23 267 23 HOH HOH . C 3 HOH A 24 268 24 HOH HOH . C 3 HOH A 25 269 25 HOH HOH . C 3 HOH A 26 270 26 HOH HOH . C 3 HOH A 27 271 27 HOH HOH . C 3 HOH A 28 272 28 HOH HOH . C 3 HOH A 29 273 29 HOH HOH . C 3 HOH A 30 274 30 HOH HOH . C 3 HOH A 31 275 31 HOH HOH . C 3 HOH A 32 276 32 HOH HOH . C 3 HOH A 33 277 33 HOH HOH . C 3 HOH A 34 278 34 HOH HOH . C 3 HOH A 35 279 35 HOH HOH . C 3 HOH A 36 280 36 HOH HOH . C 3 HOH A 37 281 37 HOH HOH . C 3 HOH A 38 282 38 HOH HOH . C 3 HOH A 39 283 39 HOH HOH . C 3 HOH A 40 284 40 HOH HOH . C 3 HOH A 41 285 41 HOH HOH . C 3 HOH A 42 286 42 HOH HOH . C 3 HOH A 43 287 43 HOH HOH . C 3 HOH A 44 288 44 HOH HOH . C 3 HOH A 45 289 45 HOH HOH . C 3 HOH A 46 290 46 HOH HOH . C 3 HOH A 47 291 47 HOH HOH . C 3 HOH A 48 292 48 HOH HOH . C 3 HOH A 49 293 49 HOH HOH . C 3 HOH A 50 294 50 HOH HOH . C 3 HOH A 51 295 51 HOH HOH . C 3 HOH A 52 296 52 HOH HOH . C 3 HOH A 53 297 53 HOH HOH . C 3 HOH A 54 298 54 HOH HOH . C 3 HOH A 55 299 55 HOH HOH . C 3 HOH A 56 300 56 HOH HOH . C 3 HOH A 57 301 57 HOH HOH . C 3 HOH A 58 302 58 HOH HOH . C 3 HOH A 59 303 59 HOH HOH . C 3 HOH A 60 304 60 HOH HOH . C 3 HOH A 61 305 61 HOH HOH . C 3 HOH A 62 306 62 HOH HOH . C 3 HOH A 63 307 63 HOH HOH . C 3 HOH A 64 308 64 HOH HOH . C 3 HOH A 65 309 65 HOH HOH . C 3 HOH A 66 310 66 HOH HOH . C 3 HOH A 67 311 67 HOH HOH . C 3 HOH A 68 312 68 HOH HOH . C 3 HOH A 69 313 69 HOH HOH . C 3 HOH A 70 314 70 HOH HOH . C 3 HOH A 71 315 71 HOH HOH . C 3 HOH A 72 316 72 HOH HOH . C 3 HOH A 73 317 73 HOH HOH . C 3 HOH A 74 318 74 HOH HOH . C 3 HOH A 75 319 75 HOH HOH . C 3 HOH A 76 320 76 HOH HOH . C 3 HOH A 77 321 77 HOH HOH . C 3 HOH A 78 322 78 HOH HOH . C 3 HOH A 79 323 79 HOH HOH . C 3 HOH A 80 324 80 HOH HOH . C 3 HOH A 81 325 81 HOH HOH . C 3 HOH A 82 326 82 HOH HOH . C 3 HOH A 83 327 83 HOH HOH . C 3 HOH A 84 328 84 HOH HOH . C 3 HOH A 85 329 85 HOH HOH . C 3 HOH A 86 330 86 HOH HOH . C 3 HOH A 87 331 87 HOH HOH . C 3 HOH A 88 332 88 HOH HOH . C 3 HOH A 89 333 99 HOH HOH . C 3 HOH A 90 334 90 HOH HOH . C 3 HOH A 91 335 91 HOH HOH . C 3 HOH A 92 336 92 HOH HOH . C 3 HOH A 93 337 93 HOH HOH . C 3 HOH A 94 338 94 HOH HOH . C 3 HOH A 95 339 95 HOH HOH . C 3 HOH A 96 340 96 HOH HOH . C 3 HOH A 97 341 97 HOH HOH . C 3 HOH A 98 342 98 HOH HOH . C 3 HOH A 99 343 99 HOH HOH . C 3 HOH A 100 344 100 HOH HOH . C 3 HOH A 101 345 101 HOH HOH . C 3 HOH A 102 346 102 HOH HOH . C 3 HOH A 103 347 103 HOH HOH . C 3 HOH A 104 348 104 HOH HOH . C 3 HOH A 105 349 105 HOH HOH . C 3 HOH A 106 350 106 HOH HOH . C 3 HOH A 107 351 107 HOH HOH . C 3 HOH A 108 352 108 HOH HOH . C 3 HOH A 109 353 109 HOH HOH . C 3 HOH A 110 354 110 HOH HOH . C 3 HOH A 111 355 111 HOH HOH . C 3 HOH A 112 356 112 HOH HOH . C 3 HOH A 113 357 113 HOH HOH . C 3 HOH A 114 358 114 HOH HOH . C 3 HOH A 115 359 115 HOH HOH . C 3 HOH A 116 360 116 HOH HOH . C 3 HOH A 117 361 117 HOH HOH . C 3 HOH A 118 362 118 HOH HOH . C 3 HOH A 119 363 119 HOH HOH . C 3 HOH A 120 364 120 HOH HOH . C 3 HOH A 121 365 121 HOH HOH . C 3 HOH A 122 366 122 HOH HOH . C 3 HOH A 123 367 123 HOH HOH . C 3 HOH A 124 368 124 HOH HOH . C 3 HOH A 125 369 125 HOH HOH . C 3 HOH A 126 370 126 HOH HOH . C 3 HOH A 127 371 127 HOH HOH . C 3 HOH A 128 372 128 HOH HOH . C 3 HOH A 129 373 129 HOH HOH . C 3 HOH A 130 374 130 HOH HOH . C 3 HOH A 131 375 131 HOH HOH . C 3 HOH A 132 376 134 HOH HOH . C 3 HOH A 133 377 135 HOH HOH . C 3 HOH A 134 378 137 HOH HOH . C 3 HOH A 135 379 138 HOH HOH . C 3 HOH A 136 380 132 HOH HOH . C 3 HOH A 137 381 133 HOH HOH . C 3 HOH A 138 382 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0H8 . . . B 2 13.618 47.091 -0.462 1 34.19 ? C1 0H8 1 A 1 HETATM 2 O O1 0H8 . . . B 2 12.759 47.239 -1.39 1 32.11 ? O1 0H8 1 A 1 HETATM 3 O O2 0H8 . . . B 2 14.898 47.73 -0.512 1 31.53 ? O2 0H8 1 A 1 HETATM 4 C C2 0H8 . . . B 2 13.13 46.469 0.846 1 35.35 ? C2 0H8 1 A 1 HETATM 5 C C3 0H8 . . . B 2 14.26 45.73 1.595 1 36.91 ? C3 0H8 1 A 1 HETATM 6 C C4 0H8 . . . B 2 13.725 45.055 2.837 1 32.94 ? C4 0H8 1 A 1 HETATM 7 O O4 0H8 . . . B 2 13.975 45.531 3.946 1 33.23 ? O4 0H8 1 A 1 HETATM 8 N N 0H8 . . . B 2 12.719 44.213 2.63 1 30.7 ? N 0H8 1 A 1 HETATM 9 C CA 0H8 . . . B 2 11.946 43.672 3.731 1 31.74 ? CA 0H8 1 A 1 HETATM 10 C C 0H8 . . . B 2 12.542 42.334 4.164 1 29.87 ? C 0H8 1 A 1 HETATM 11 O O 0H8 . . . B 2 13.299 41.721 3.414 1 27.56 ? O 0H8 1 A 1 HETATM 12 C CB 0H8 . . . B 2 10.441 43.518 3.351 1 30.89 ? CB 0H8 1 A 1 HETATM 13 C CG1 0H8 . . . B 2 10.246 42.449 2.302 1 34.9 ? CG1 0H8 1 A 1 HETATM 14 C CG2 0H8 . . . B 2 9.615 43.197 4.578 1 32.56 ? CG2 0H8 1 A 1 HETATM 15 N N1 0H8 . . . B 2 13.158 41.913 5.284 1 28.37 ? N1 0H8 1 A 1 HETATM 16 C CA1 0H8 . . . B 2 13.61 40.585 5.719 1 28.33 ? CA1 0H8 1 A 1 HETATM 17 C C5 0H8 . . . B 2 12.653 39.471 5.305 1 26.49 ? C5 0H8 1 A 1 HETATM 18 O O3 0H8 . . . B 2 11.447 39.661 5.291 1 27.24 ? O3 0H8 1 A 1 HETATM 19 C CB1 0H8 . . . B 2 13.72 40.74 7.244 1 27.53 ? CB1 0H8 1 A 1 HETATM 20 C CG 0H8 . . . B 2 12.756 41.797 7.568 1 28.37 ? CG 0H8 1 A 1 HETATM 21 C CD 0H8 . . . B 2 12.941 42.789 6.446 1 29.93 ? CD 0H8 1 A 1 HETATM 22 N N2 0H8 . . . B 2 13.202 38.334 4.894 1 25.23 ? N2 0H8 1 A 1 HETATM 23 C CA2 0H8 . . . B 2 12.555 37.538 4.613 1 23.94 ? CA2 0H8 1 A 1 HETATM 24 P P 0H8 . . . B 2 12.531 36.194 5.846 1 22.97 ? P 0H8 1 A 1 HETATM 25 O O1P 0H8 . . . B 2 11.846 36.813 7.097 1 20.01 ? O1P 0H8 1 A 1 HETATM 26 O O2P 0H8 . . . B 2 11.424 35.109 5.549 1 20.19 ? O2P 0H8 1 A 1 HETATM 27 C CB2 0H8 . . . B 2 13.018 36.857 3.32 1 20.98 ? CB2 0H8 1 A 1 HETATM 28 C CG3 0H8 . . . B 2 12.836 37.792 2.167 1 23.99 ? CG3 0H8 1 A 1 HETATM 29 C CD1 0H8 . . . B 2 13.394 37.141 0.886 1 24.63 ? CD1 0H8 1 A 1 HETATM 30 C CE 0H8 . . . B 2 13.259 38.177 -0.195 1 26.76 ? CE 0H8 1 A 1 HETATM 31 N NZ 0H8 . . . B 2 13.855 37.733 -1.426 1 24.17 ? NZ 0H8 1 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #