data_1AUJ # _model_server_result.job_id VEOP9UK176AKP87eP975AQ _model_server_result.datetime_utc '2025-03-21 20:05:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1auj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":247}' # _entry.id 1AUJ # _exptl.entry_id 1AUJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.296 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-{[1-(2-AMINO-3-PHENYL-PROPIONYL)-PYRROLIDINE-2-CARBONYL]-AMINO}-2-(3-CYANO-PHENYL)-ETHANEBORONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AUJ _cell.length_a 55 _cell.length_b 58.4 _cell.length_c 67.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A OG SER 177 A SER 195 1_555 C B1 PPB . A PPB 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? metalc ? metalc1 A NH1 ARG 49 A ARG 65 1_555 B CA CA . A CA 246 1_555 A ? ? ? ? ? ? ? ? ? ? ? 3.297 ? metalc ? metalc2 A O ILE 55 A ILE 73 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc3 B CA CA . A CA 246 1_555 D O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc4 B CA CA . A CA 246 1_555 D O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc5 B CA CA . A CA 246 1_555 D O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? # _chem_comp.formula 'C23 H27 B N4 O4' _chem_comp.formula_weight 434.296 _chem_comp.id PPB _chem_comp.mon_nstd_flag . _chem_comp.name '1-{[1-(2-AMINO-3-PHENYL-PROPIONYL)-PYRROLIDINE-2-CARBONYL]-AMINO}-2-(3-CYANO-PHENYL)-ETHANEBORONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (D)PHE-PRO-BOROPHE(M-CN) # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 PPB sing 260 n n C3 C2 PPB sing 261 n n C3 H31 PPB sing 262 n n C3 H32 PPB sing 263 n n C4 C16 PPB doub 264 n y C4 C24 PPB sing 265 n y N1 C2 PPB sing 266 n n N1 C8 PPB sing 267 n n N1 HN1 PPB sing 268 n n B1 C2 PPB sing 269 n n B1 O2 PPB sing 270 n n B1 O1 PPB sing 271 n n C2 H2 PPB sing 272 n n O2 HO2 PPB sing 273 n n O1 HO1 PPB sing 274 n n N5 C7 PPB sing 275 n n N5 C11 PPB sing 276 n n N5 C12 PPB sing 277 n n C7 C8 PPB sing 278 n n C7 C9 PPB sing 279 n n C7 H7 PPB sing 280 n n C8 O3 PPB doub 281 n n C9 C10 PPB sing 282 n n C9 H91 PPB sing 283 n n C9 H92 PPB sing 284 n n C10 C11 PPB sing 285 n n C10 H101 PPB sing 286 n n C10 H102 PPB sing 287 n n C11 H111 PPB sing 288 n n C11 H112 PPB sing 289 n n C12 O4 PPB doub 290 n n C12 C14 PPB sing 291 n n C14 C13 PPB sing 292 n n C14 N6 PPB sing 293 n n C14 H14 PPB sing 294 n n C16 C23 PPB sing 295 n y C16 H16 PPB sing 296 n n C23 C5 PPB doub 297 n y C23 C6 PPB sing 298 n n C24 C25 PPB doub 299 n y C24 H24 PPB sing 300 n n C25 C5 PPB sing 301 n y C25 H25 PPB sing 302 n n C5 H5 PPB sing 303 n n C6 N2 PPB trip 304 n n C13 C21 PPB sing 305 n n C13 H131 PPB sing 306 n n C13 H132 PPB sing 307 n n N6 HN61 PPB sing 308 n n N6 HN62 PPB sing 309 n n C17 C18 PPB doub 310 n y C17 C22 PPB sing 311 n y C17 H17 PPB sing 312 n n C18 C19 PPB sing 313 n y C18 H18 PPB sing 314 n n C19 C20 PPB doub 315 n y C19 H19 PPB sing 316 n n C20 C21 PPB sing 317 n y C20 H20 PPB sing 318 n n C21 C22 PPB doub 319 n y C22 H22 PPB sing 320 n n # _atom_sites.entry_id 1AUJ _atom_sites.fract_transf_matrix[1][1] 0.018182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 246 197 CA CA . C 3 PPB A 1 247 195 PPB PPB . D 4 HOH A 1 604 604 HOH HOH . D 4 HOH A 2 605 607 HOH HOH . D 4 HOH A 3 606 610 HOH HOH . D 4 HOH A 4 607 611 HOH HOH . D 4 HOH A 5 608 615 HOH HOH . D 4 HOH A 6 609 618 HOH HOH . D 4 HOH A 7 610 621 HOH HOH . D 4 HOH A 8 611 623 HOH HOH . D 4 HOH A 9 612 628 HOH HOH . D 4 HOH A 10 613 631 HOH HOH . D 4 HOH A 11 614 634 HOH HOH . D 4 HOH A 12 615 638 HOH HOH . D 4 HOH A 13 616 645 HOH HOH . D 4 HOH A 14 617 647 HOH HOH . D 4 HOH A 15 618 650 HOH HOH . D 4 HOH A 16 619 657 HOH HOH . D 4 HOH A 17 620 662 HOH HOH . D 4 HOH A 18 621 663 HOH HOH . D 4 HOH A 19 622 666 HOH HOH . D 4 HOH A 20 623 669 HOH HOH . D 4 HOH A 21 624 674 HOH HOH . D 4 HOH A 22 625 676 HOH HOH . D 4 HOH A 23 626 679 HOH HOH . D 4 HOH A 24 627 681 HOH HOH . D 4 HOH A 25 628 686 HOH HOH . D 4 HOH A 26 629 688 HOH HOH . D 4 HOH A 27 630 696 HOH HOH . D 4 HOH A 28 631 697 HOH HOH . D 4 HOH A 29 632 703 HOH HOH . D 4 HOH A 30 633 706 HOH HOH . D 4 HOH A 31 634 713 HOH HOH . D 4 HOH A 32 635 719 HOH HOH . D 4 HOH A 33 636 725 HOH HOH . D 4 HOH A 34 637 728 HOH HOH . D 4 HOH A 35 638 730 HOH HOH . D 4 HOH A 36 639 736 HOH HOH . D 4 HOH A 37 640 741 HOH HOH . D 4 HOH A 38 641 744 HOH HOH . D 4 HOH A 39 642 750 HOH HOH . D 4 HOH A 40 643 754 HOH HOH . D 4 HOH A 41 644 762 HOH HOH . D 4 HOH A 42 645 767 HOH HOH . D 4 HOH A 43 646 769 HOH HOH . D 4 HOH A 44 647 772 HOH HOH . D 4 HOH A 45 648 779 HOH HOH . D 4 HOH A 46 649 781 HOH HOH . D 4 HOH A 47 650 794 HOH HOH . D 4 HOH A 48 651 795 HOH HOH . D 4 HOH A 49 652 803 HOH HOH . D 4 HOH A 50 653 805 HOH HOH . D 4 HOH A 51 654 819 HOH HOH . D 4 HOH A 52 655 822 HOH HOH . D 4 HOH A 53 656 838 HOH HOH . D 4 HOH A 54 657 847 HOH HOH . D 4 HOH A 55 658 1 HOH HOH . D 4 HOH A 56 659 2 HOH HOH . D 4 HOH A 57 660 3 HOH HOH . D 4 HOH A 58 661 4 HOH HOH . D 4 HOH A 59 662 6 HOH HOH . D 4 HOH A 60 663 7 HOH HOH . D 4 HOH A 61 664 9 HOH HOH . D 4 HOH A 62 665 10 HOH HOH . D 4 HOH A 63 666 12 HOH HOH . D 4 HOH A 64 667 13 HOH HOH . D 4 HOH A 65 668 14 HOH HOH . D 4 HOH A 66 669 15 HOH HOH . D 4 HOH A 67 670 16 HOH HOH . D 4 HOH A 68 671 17 HOH HOH . D 4 HOH A 69 672 20 HOH HOH . D 4 HOH A 70 673 23 HOH HOH . D 4 HOH A 71 674 24 HOH HOH . D 4 HOH A 72 675 29 HOH HOH . D 4 HOH A 73 676 32 HOH HOH . D 4 HOH A 74 677 34 HOH HOH . D 4 HOH A 75 678 35 HOH HOH . D 4 HOH A 76 679 42 HOH HOH . D 4 HOH A 77 680 43 HOH HOH . D 4 HOH A 78 681 44 HOH HOH . D 4 HOH A 79 682 46 HOH HOH . D 4 HOH A 80 683 53 HOH HOH . D 4 HOH A 81 684 54 HOH HOH . D 4 HOH A 82 685 57 HOH HOH . D 4 HOH A 83 686 58 HOH HOH . D 4 HOH A 84 687 60 HOH HOH . D 4 HOH A 85 688 61 HOH HOH . D 4 HOH A 86 689 64 HOH HOH . D 4 HOH A 87 690 65 HOH HOH . D 4 HOH A 88 691 66 HOH HOH . D 4 HOH A 89 692 68 HOH HOH . D 4 HOH A 90 693 69 HOH HOH . D 4 HOH A 91 694 70 HOH HOH . D 4 HOH A 92 695 71 HOH HOH . D 4 HOH A 93 696 76 HOH HOH . D 4 HOH A 94 697 80 HOH HOH . D 4 HOH A 95 698 83 HOH HOH . D 4 HOH A 96 699 84 HOH HOH . D 4 HOH A 97 700 87 HOH HOH . D 4 HOH A 98 701 91 HOH HOH . D 4 HOH A 99 702 93 HOH HOH . D 4 HOH A 100 703 94 HOH HOH . D 4 HOH A 101 704 107 HOH HOH . D 4 HOH A 102 705 110 HOH HOH . D 4 HOH A 103 706 114 HOH HOH . D 4 HOH A 104 707 116 HOH HOH . D 4 HOH A 105 708 119 HOH HOH . D 4 HOH A 106 709 120 HOH HOH . D 4 HOH A 107 710 127 HOH HOH . D 4 HOH A 108 711 133 HOH HOH . D 4 HOH A 109 712 134 HOH HOH . D 4 HOH A 110 713 142 HOH HOH . D 4 HOH A 111 714 144 HOH HOH . D 4 HOH A 112 715 148 HOH HOH . D 4 HOH A 113 716 151 HOH HOH . D 4 HOH A 114 717 152 HOH HOH . D 4 HOH A 115 718 155 HOH HOH . D 4 HOH A 116 719 156 HOH HOH . D 4 HOH A 117 720 157 HOH HOH . D 4 HOH A 118 721 159 HOH HOH . D 4 HOH A 119 722 163 HOH HOH . D 4 HOH A 120 723 167 HOH HOH . D 4 HOH A 121 724 173 HOH HOH . D 4 HOH A 122 725 175 HOH HOH . D 4 HOH A 123 726 177 HOH HOH . D 4 HOH A 124 727 184 HOH HOH . D 4 HOH A 125 728 185 HOH HOH . D 4 HOH A 126 729 186 HOH HOH . D 4 HOH A 127 730 191 HOH HOH . D 4 HOH A 128 731 193 HOH HOH . D 4 HOH A 129 732 194 HOH HOH . D 4 HOH A 130 733 195 HOH HOH . D 4 HOH A 131 734 196 HOH HOH . D 4 HOH A 132 735 198 HOH HOH . D 4 HOH A 133 736 199 HOH HOH . D 4 HOH A 134 737 491 HOH HOH . D 4 HOH A 135 738 493 HOH HOH . D 4 HOH A 136 739 494 HOH HOH . D 4 HOH A 137 740 495 HOH HOH . D 4 HOH A 138 741 496 HOH HOH . D 4 HOH A 139 742 497 HOH HOH . D 4 HOH A 140 743 498 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 PPB . . . C 3 28.688 14.344 20.059 1 11.82 ? C3 PPB 247 A 1 HETATM 2 C C4 PPB . . . C 3 29.13 14.032 18.618 1 13.36 ? C4 PPB 247 A 1 HETATM 3 N N1 PPB . . . C 3 27.216 12.443 20.326 1 15.04 ? N1 PPB 247 A 1 HETATM 4 B B1 PPB . . . C 3 28.018 13.488 22.326 1 7.02 ? B1 PPB 247 A 1 HETATM 5 C C2 PPB . . . C 3 28.364 13.117 20.921 1 12.88 ? C2 PPB 247 A 1 HETATM 6 O O2 PPB . . . C 3 29.265 13.85 23.004 1 14.52 ? O2 PPB 247 A 1 HETATM 7 O O1 PPB . . . C 3 27.679 12.259 23.042 1 16.89 ? O1 PPB 247 A 1 HETATM 8 N N5 PPB . . . C 3 26.027 9.657 18.557 1 18.92 ? N5 PPB 247 A 1 HETATM 9 C C7 PPB . . . C 3 25.861 10.794 19.452 1 17.92 ? C7 PPB 247 A 1 HETATM 10 C C8 PPB . . . C 3 27.2 11.159 19.993 1 16.25 ? C8 PPB 247 A 1 HETATM 11 O O3 PPB . . . C 3 28.068 10.307 20.221 1 16.14 ? O3 PPB 247 A 1 HETATM 12 C C9 PPB . . . C 3 25.054 10.236 20.624 1 18.76 ? C9 PPB 247 A 1 HETATM 13 C C10 PPB . . . C 3 25.043 8.711 20.527 1 21.67 ? C10 PPB 247 A 1 HETATM 14 C C11 PPB . . . C 3 25.717 8.372 19.185 1 19.78 ? C11 PPB 247 A 1 HETATM 15 C C12 PPB . . . C 3 26.43 9.905 17.298 1 23.09 ? C12 PPB 247 A 1 HETATM 16 O O4 PPB . . . C 3 27.002 10.955 16.985 1 23.12 ? O4 PPB 247 A 1 HETATM 17 C C14 PPB . . . C 3 26.504 8.656 16.401 1 24.09 ? C14 PPB 247 A 1 HETATM 18 C C16 PPB . . . C 3 29.598 12.775 18.193 1 12.71 ? C16 PPB 247 A 1 HETATM 19 C C23 PPB . . . C 3 30.098 12.631 16.891 1 14.12 ? C23 PPB 247 A 1 HETATM 20 C C24 PPB . . . C 3 29.155 15.116 17.709 1 11.86 ? C24 PPB 247 A 1 HETATM 21 C C25 PPB . . . C 3 29.674 14.977 16.401 1 13.77 ? C25 PPB 247 A 1 HETATM 22 C C5 PPB . . . C 3 30.148 13.724 16.014 1 14.42 ? C5 PPB 247 A 1 HETATM 23 C C6 PPB . . . C 3 30.541 11.293 16.344 1 15.79 ? C6 PPB 247 A 1 HETATM 24 N N2 PPB . . . C 3 30.9 10.24 15.895 1 18.99 ? N2 PPB 247 A 1 HETATM 25 C C13 PPB . . . C 3 25.505 8.587 15.237 1 27.92 ? C13 PPB 247 A 1 HETATM 26 N N6 PPB . . . C 3 27.86 8.557 15.869 1 22.11 ? N6 PPB 247 A 1 HETATM 27 C C17 PPB . . . C 3 22.272 6.972 16.713 1 37.06 ? C17 PPB 247 A 1 HETATM 28 C C18 PPB . . . C 3 21.3 7.48 15.813 1 36.23 ? C18 PPB 247 A 1 HETATM 29 C C19 PPB . . . C 3 21.647 8.391 14.806 1 33.58 ? C19 PPB 247 A 1 HETATM 30 C C20 PPB . . . C 3 23.006 8.786 14.703 1 35.61 ? C20 PPB 247 A 1 HETATM 31 C C21 PPB . . . C 3 24.022 8.285 15.568 1 33.67 ? C21 PPB 247 A 1 HETATM 32 C C22 PPB . . . C 3 23.626 7.379 16.593 1 36.55 ? C22 PPB 247 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #