data_1AUX # _model_server_result.job_id zto5EGOXnqqATxfRQ6sWWQ _model_server_result.datetime_utc '2025-01-05 17:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":800}' # _entry.id 1AUX # _exptl.entry_id 1AUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1AUX _cell.length_a 76.16 _cell.length_b 76.16 _cell.length_c 182.33 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 264 A GLU 373 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc2 A OE1 GLU 264 A GLU 373 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A OE2 GLU 277 A GLU 386 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc4 D O2A AGS . A AGS 800 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc5 D O3G AGS . A AGS 800 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc6 D O2B AGS . A AGS 800 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc7 B OE2 GLU 264 B GLU 373 1_555 E CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.221 ? metalc ? metalc8 B OE1 GLU 264 B GLU 373 1_555 E CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc9 B OE2 GLU 277 B GLU 386 1_555 E CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc10 F O3B AGS . B AGS 800 1_555 E CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc11 F O1A AGS . B AGS 800 1_555 E CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG S1G AGS doub 1 n n PG O2G AGS sing 2 n n PG O3G AGS sing 3 n n PG O3B AGS sing 4 n n PB O1B AGS doub 5 n n PB O2B AGS sing 6 n n PB O3B AGS sing 7 n n PB O3A AGS sing 8 n n PA O1A AGS doub 9 n n PA O2A AGS sing 10 n n PA O3A AGS sing 11 n n PA O5' AGS sing 12 n n O5' C5' AGS sing 13 n n C5' C4' AGS sing 14 n n C4' O4' AGS sing 15 n n C4' C3' AGS sing 16 n n O4' C1' AGS sing 17 n n C3' O3' AGS sing 18 n n C3' C2' AGS sing 19 n n C2' O2' AGS sing 20 n n C2' C1' AGS sing 21 n n C1' N9 AGS sing 22 n n N9 C8 AGS sing 23 n y N9 C4 AGS sing 24 n y C8 N7 AGS doub 25 n y N7 C5 AGS sing 26 n y C5 C6 AGS sing 27 n y C5 C4 AGS doub 28 n y C6 N6 AGS sing 29 n n C6 N1 AGS doub 30 n y N1 C2 AGS sing 31 n y C2 N3 AGS doub 32 n y N3 C4 AGS sing 33 n y O2G HOG2 AGS sing 34 n n O3G H21 AGS sing 35 n n O2B HOB2 AGS sing 36 n n O2A HOA2 AGS sing 37 n n C5' "H5'1" AGS sing 38 n n C5' "H5'2" AGS sing 39 n n C4' H4' AGS sing 40 n n C3' H3' AGS sing 41 n n O3' HO3' AGS sing 42 n n C2' H2' AGS sing 43 n n O2' HO2' AGS sing 44 n n C1' H1' AGS sing 45 n n C8 H8 AGS sing 46 n n N6 HN61 AGS sing 47 n n N6 HN62 AGS sing 48 n n C2 H2 AGS sing 49 n n # _atom_sites.entry_id 1AUX _atom_sites.fract_transf_matrix[1][1] 0.01313 _atom_sites.fract_transf_matrix[1][2] 0.007581 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 801 801 CA CA . D 3 AGS A 1 800 800 AGS SAP . E 2 CA B 1 801 801 CA CA . F 3 AGS B 1 800 800 AGS SAP . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2043 2043 HOH HOH . G 4 HOH A 28 2047 2047 HOH HOH . G 4 HOH A 29 2053 2053 HOH HOH . G 4 HOH A 30 2054 2054 HOH HOH . H 4 HOH B 1 2027 2027 HOH HOH . H 4 HOH B 2 2028 2028 HOH HOH . H 4 HOH B 3 2029 2029 HOH HOH . H 4 HOH B 4 2030 2030 HOH HOH . H 4 HOH B 5 2031 2031 HOH HOH . H 4 HOH B 6 2032 2032 HOH HOH . H 4 HOH B 7 2033 2033 HOH HOH . H 4 HOH B 8 2034 2034 HOH HOH . H 4 HOH B 9 2035 2035 HOH HOH . H 4 HOH B 10 2036 2036 HOH HOH . H 4 HOH B 11 2037 2037 HOH HOH . H 4 HOH B 12 2038 2038 HOH HOH . H 4 HOH B 13 2039 2039 HOH HOH . H 4 HOH B 14 2040 2040 HOH HOH . H 4 HOH B 15 2041 2041 HOH HOH . H 4 HOH B 16 2042 2042 HOH HOH . H 4 HOH B 17 2044 2044 HOH HOH . H 4 HOH B 18 2045 2045 HOH HOH . H 4 HOH B 19 2046 2046 HOH HOH . H 4 HOH B 20 2048 2048 HOH HOH . H 4 HOH B 21 2049 2049 HOH HOH . H 4 HOH B 22 2050 2050 HOH HOH . H 4 HOH B 23 2051 2051 HOH HOH . H 4 HOH B 24 2052 2052 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . F 3 60.17 64.165 8.059 1 76.06 ? PG AGS 800 B 1 HETATM 2 S S1G AGS . . . F 3 59.626 64.508 6.175 1 72.34 ? S1G AGS 800 B 1 HETATM 3 O O2G AGS . . . F 3 60.274 62.661 8.371 1 74.89 ? O2G AGS 800 B 1 HETATM 4 O O3G AGS . . . F 3 61.499 64.816 8.323 1 75.82 ? O3G AGS 800 B 1 HETATM 5 P PB AGS . . . F 3 58.558 66.346 9.221 1 79.21 ? PB AGS 800 B 1 HETATM 6 O O1B AGS . . . F 3 57.883 66.746 7.957 1 79.89 ? O1B AGS 800 B 1 HETATM 7 O O2B AGS . . . F 3 59.647 67.236 9.797 1 81.86 ? O2B AGS 800 B 1 HETATM 8 O O3B AGS . . . F 3 59.069 64.859 9.035 1 75.78 ? O3B AGS 800 B 1 HETATM 9 P PA AGS . . . F 3 57.37 65.289 11.641 1 79.25 ? PA AGS 800 B 1 HETATM 10 O O1A AGS . . . F 3 57.364 63.814 11.294 1 80.99 ? O1A AGS 800 B 1 HETATM 11 O O2A AGS . . . F 3 56.177 65.76 12.419 1 77.49 ? O2A AGS 800 B 1 HETATM 12 O O3A AGS . . . F 3 57.393 66.12 10.248 1 80.87 ? O3A AGS 800 B 1 HETATM 13 O O5' AGS . . . F 3 58.765 65.743 12.362 1 76.76 ? O5' AGS 800 B 1 HETATM 14 C C5' AGS . . . F 3 59.919 64.964 11.909 1 71.55 ? C5' AGS 800 B 1 HETATM 15 C C4' AGS . . . F 3 60.531 64.066 12.985 1 66.5 ? C4' AGS 800 B 1 HETATM 16 O O4' AGS . . . F 3 60.598 64.851 14.212 1 61.41 ? O4' AGS 800 B 1 HETATM 17 C C3' AGS . . . F 3 59.736 62.811 13.407 1 65.85 ? C3' AGS 800 B 1 HETATM 18 O O3' AGS . . . F 3 59.904 61.676 12.564 1 69.52 ? O3' AGS 800 B 1 HETATM 19 C C2' AGS . . . F 3 60.185 62.615 14.858 1 61.51 ? C2' AGS 800 B 1 HETATM 20 O O2' AGS . . . F 3 61.33 61.803 15.03 1 63.3 ? O2' AGS 800 B 1 HETATM 21 C C1' AGS . . . F 3 60.401 64.015 15.355 1 58.3 ? C1' AGS 800 B 1 HETATM 22 N N9 AGS . . . F 3 59.245 64.514 16.142 1 53.73 ? N9 AGS 800 B 1 HETATM 23 C C8 AGS . . . F 3 58.123 65.072 15.548 1 49.61 ? C8 AGS 800 B 1 HETATM 24 N N7 AGS . . . F 3 57.186 65.443 16.415 1 46.3 ? N7 AGS 800 B 1 HETATM 25 C C5 AGS . . . F 3 57.728 65.106 17.662 1 48.41 ? C5 AGS 800 B 1 HETATM 26 C C6 AGS . . . F 3 57.266 65.222 19.014 1 47.39 ? C6 AGS 800 B 1 HETATM 27 N N6 AGS . . . F 3 56.067 65.73 19.378 1 49.09 ? N6 AGS 800 B 1 HETATM 28 N N1 AGS . . . F 3 58.09 64.774 19.99 1 47.15 ? N1 AGS 800 B 1 HETATM 29 C C2 AGS . . . F 3 59.3 64.25 19.675 1 44.13 ? C2 AGS 800 B 1 HETATM 30 N N3 AGS . . . F 3 59.831 64.093 18.486 1 41.24 ? N3 AGS 800 B 1 HETATM 31 C C4 AGS . . . F 3 58.996 64.541 17.498 1 48.88 ? C4 AGS 800 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #