data_1AV6 # _model_server_result.job_id dBBzrr4gMzxAftWEVKeBlg _model_server_result.datetime_utc '2024-11-23 20:39:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1av6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1AV6 # _exptl.entry_id 1AV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AV6 _cell.length_a 61.8 _cell.length_b 64.6 _cell.length_c 99.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O5' _struct_conn.ptnr1_label_comp_id G _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id G _struct_conn.ptnr1_auth_seq_id 402 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id PG _struct_conn.ptnr2_label_comp_id MGT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MGT _struct_conn.ptnr2_auth_seq_id 408 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.62 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AV6 _atom_sites.fract_transf_matrix[1][1] 0.016181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGT B 1 408 402 MGT MGT . D 4 SAH A 1 400 400 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 4 10.594 49.281 86.32 1 6.96 ? N SAH 400 A 1 HETATM 2 C CA SAH . . . D 4 9.36 50.05 86.265 1 6.96 ? CA SAH 400 A 1 HETATM 3 C CB SAH . . . D 4 9.492 51.203 85.258 1 6.96 ? CB SAH 400 A 1 HETATM 4 C CG SAH . . . D 4 10.676 52.124 85.568 1 6.96 ? CG SAH 400 A 1 HETATM 5 S SD SAH . . . D 4 10.856 53.628 84.572 1 6.96 ? SD SAH 400 A 1 HETATM 6 C C SAH . . . D 4 8.174 49.152 85.908 1 6.96 ? C SAH 400 A 1 HETATM 7 O O SAH . . . D 4 8.282 47.942 86.224 1 6.96 ? O SAH 400 A 1 HETATM 8 O OXT SAH . . . D 4 7.058 49.699 85.783 1 6.96 ? OXT SAH 400 A 1 HETATM 9 C C5' SAH . . . D 4 12.225 54.447 85.397 1 6.96 ? C5' SAH 400 A 1 HETATM 10 C C4' SAH . . . D 4 11.979 54.617 86.867 1 6.96 ? C4' SAH 400 A 1 HETATM 11 O O4' SAH . . . D 4 13.229 54.859 87.528 1 6.96 ? O4' SAH 400 A 1 HETATM 12 C C3' SAH . . . D 4 11.044 55.774 87.171 1 6.96 ? C3' SAH 400 A 1 HETATM 13 O O3' SAH . . . D 4 9.813 55.322 87.839 1 6.96 ? O3' SAH 400 A 1 HETATM 14 C C2' SAH . . . D 4 11.898 56.654 88.089 1 6.96 ? C2' SAH 400 A 1 HETATM 15 O O2' SAH . . . D 4 11.125 57.205 89.2 1 6.96 ? O2' SAH 400 A 1 HETATM 16 C C1' SAH . . . D 4 12.951 55.71 88.618 1 6.96 ? C1' SAH 400 A 1 HETATM 17 N N9 SAH . . . D 4 14.216 56.389 89.024 1 6.96 ? N9 SAH 400 A 1 HETATM 18 C C8 SAH . . . D 4 14.895 57.446 88.455 1 6.96 ? C8 SAH 400 A 1 HETATM 19 N N7 SAH . . . D 4 15.959 57.796 89.114 1 6.96 ? N7 SAH 400 A 1 HETATM 20 C C5 SAH . . . D 4 15.985 56.918 90.188 1 6.96 ? C5 SAH 400 A 1 HETATM 21 C C6 SAH . . . D 4 16.861 56.77 91.26 1 6.96 ? C6 SAH 400 A 1 HETATM 22 N N6 SAH . . . D 4 17.975 57.515 91.442 1 6.96 ? N6 SAH 400 A 1 HETATM 23 N N1 SAH . . . D 4 16.537 55.772 92.11 1 6.96 ? N1 SAH 400 A 1 HETATM 24 C C2 SAH . . . D 4 15.489 54.992 91.95 1 6.96 ? C2 SAH 400 A 1 HETATM 25 N N3 SAH . . . D 4 14.615 55.039 90.999 1 6.96 ? N3 SAH 400 A 1 HETATM 26 C C4 SAH . . . D 4 14.93 56.046 90.14 1 6.96 ? C4 SAH 400 A 1 HETATM 27 H HN1 SAH . . . D 4 11.443 49.636 86.623 1 15 ? HN1 SAH 400 A 1 HETATM 28 H HO2' SAH . . . D 4 10.226 56.956 88.939 1 15 ? HO2' SAH 400 A 1 HETATM 29 H HN61 SAH . . . D 4 18.222 58.203 90.743 1 15 ? HN61 SAH 400 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #