data_1AV6 # _model_server_result.job_id dWelDKsYec6IPB4QiCS9vA _model_server_result.datetime_utc '2024-11-23 21:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1av6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":408}' # _entry.id 1AV6 # _exptl.entry_id 1AV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AV6 _cell.length_a 61.8 _cell.length_b 64.6 _cell.length_c 99.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O5' _struct_conn.ptnr1_label_comp_id G _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id G _struct_conn.ptnr1_auth_seq_id 402 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id PG _struct_conn.ptnr2_label_comp_id MGT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MGT _struct_conn.ptnr2_auth_seq_id 408 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.62 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AV6 _atom_sites.fract_transf_matrix[1][1] 0.016181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGT B 1 408 402 MGT MGT . D 4 SAH A 1 400 400 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MGT . . . C 3 13.984 53.782 75.286 1 19.21 ? PG MGT 408 B 1 HETATM 2 O O1G MGT . . . C 3 15.205 53.704 76.135 1 19.21 ? O1G MGT 408 B 1 HETATM 3 O O2G MGT . . . C 3 13.967 53.094 73.993 1 19.21 ? O2G MGT 408 B 1 HETATM 4 O O3B MGT . . . C 3 13.379 55.277 75.042 1 19.21 ? O3B MGT 408 B 1 HETATM 5 P PB MGT . . . C 3 13.946 56.839 74.952 1 19.21 ? PB MGT 408 B 1 HETATM 6 O O1B MGT . . . C 3 12.757 57.706 75.189 1 19.21 ? O1B MGT 408 B 1 HETATM 7 O O2B MGT . . . C 3 15.128 56.983 75.842 1 19.21 ? O2B MGT 408 B 1 HETATM 8 O O3A MGT . . . C 3 14.472 57.18 73.505 1 19.21 ? O3A MGT 408 B 1 HETATM 9 P PA MGT . . . C 3 13.675 57.014 72.073 1 19.21 ? PA MGT 408 B 1 HETATM 10 O O1A MGT . . . C 3 14.262 55.884 71.319 1 19.21 ? O1A MGT 408 B 1 HETATM 11 O O2A MGT . . . C 3 12.229 57.16 72.131 1 19.21 ? O2A MGT 408 B 1 HETATM 12 O O5' MGT . . . C 3 14.308 58.366 71.455 1 19.21 ? O5' MGT 408 B 1 HETATM 13 C C5' MGT . . . C 3 13.864 59.714 71.686 1 19.21 ? C5' MGT 408 B 1 HETATM 14 C C4' MGT . . . C 3 14.04 60.567 70.422 1 19.21 ? C4' MGT 408 B 1 HETATM 15 O O4' MGT . . . C 3 15.412 60.431 69.898 1 19.21 ? O4' MGT 408 B 1 HETATM 16 C C3' MGT . . . C 3 13.023 60.131 69.309 1 19.21 ? C3' MGT 408 B 1 HETATM 17 O O3' MGT . . . C 3 11.775 60.851 69.198 1 19.21 ? O3' MGT 408 B 1 HETATM 18 C C2' MGT . . . C 3 13.757 60.621 68.125 1 19.21 ? C2' MGT 408 B 1 HETATM 19 O O2' MGT . . . C 3 13.55 62.068 68.057 1 19.21 ? O2' MGT 408 B 1 HETATM 20 C C1' MGT . . . C 3 15.229 60.246 68.509 1 19.21 ? C1' MGT 408 B 1 HETATM 21 N N9 MGT . . . C 3 15.653 58.821 68.245 1 19.21 ? N9 MGT 408 B 1 HETATM 22 C C8 MGT . . . C 3 15.065 57.598 68.565 1 19.21 ? C8 MGT 408 B 1 HETATM 23 N N7 MGT . . . C 3 15.761 56.568 68.191 1 19.21 ? N7 MGT 408 B 1 HETATM 24 C CM7 MGT . . . C 3 15.481 55.172 68.327 1 19.21 ? CM7 MGT 408 B 1 HETATM 25 C C5 MGT . . . C 3 16.895 57.111 67.575 1 19.21 ? C5 MGT 408 B 1 HETATM 26 C C6 MGT . . . C 3 18.046 56.496 66.973 1 19.21 ? C6 MGT 408 B 1 HETATM 27 O O6 MGT . . . C 3 18.409 55.335 66.828 1 19.21 ? O6 MGT 408 B 1 HETATM 28 N N1 MGT . . . C 3 18.929 57.417 66.517 1 19.21 ? N1 MGT 408 B 1 HETATM 29 C C2 MGT . . . C 3 18.762 58.758 66.606 1 19.21 ? C2 MGT 408 B 1 HETATM 30 N N2 MGT . . . C 3 19.739 59.487 66.165 1 19.21 ? N2 MGT 408 B 1 HETATM 31 N N3 MGT . . . C 3 17.717 59.358 67.145 1 19.21 ? N3 MGT 408 B 1 HETATM 32 C C4 MGT . . . C 3 16.825 58.478 67.612 1 19.21 ? C4 MGT 408 B 1 HETATM 33 H HO2' MGT . . . C 3 12.644 62.215 68.328 1 15 ? HO2' MGT 408 B 1 HETATM 34 H HN1 MGT . . . C 3 19.767 57.01 66.116 1 15 ? HN1 MGT 408 B 1 HETATM 35 H HN21 MGT . . . C 3 20.561 59.111 65.724 1 15 ? HN21 MGT 408 B 1 HETATM 36 H HN22 MGT . . . C 3 19.648 60.488 66.293 1 15 ? HN22 MGT 408 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #