data_1AVB # _model_server_result.job_id Mb9VlXMCRwKxJ8qWIgCu5Q _model_server_result.datetime_utc '2025-03-04 23:03:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1avb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 1AVB # _exptl.entry_id 1AVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AVB _cell.length_a 85.65 _cell.length_b 92.57 _cell.length_c 67.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 300 NAG 2 n C NAG 2 C 2 NAG A 301 NAG 2 n D NAG 1 D 1 NAG B 300 NAG 2 n D NAG 2 D 2 NAG B 301 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 180 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 B SG CYS 144 B CYS 144 1_555 B SG CYS 180 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? covale ? covale1 A ND2 ASN 12 A ASN 12 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 68 A ASN 68 1_555 E C1 NAG . A NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 107 A ASN 107 1_555 F C1 NAG . A NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 B ND2 ASN 12 B ASN 12 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 B ND2 ASN 68 B ASN 68 1_555 H C1 NAG . B NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale6 B ND2 ASN 107 B ASN 107 1_555 I C1 NAG . B NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 1AVB _atom_sites.fract_transf_matrix[1][1] 0.011675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 400 400 NAG NAG . F 3 NAG A 1 500 500 NAG NAG . G 4 SO4 A 1 501 1 SO4 SO4 . H 3 NAG B 1 400 400 NAG NAG . I 3 NAG B 1 500 500 NAG NAG . J 4 SO4 B 1 501 1 SO4 SO4 . K 5 HOH A 1 502 2 HOH HOH . K 5 HOH A 2 503 4 HOH HOH . K 5 HOH A 3 504 5 HOH HOH . K 5 HOH A 4 505 6 HOH HOH . K 5 HOH A 5 506 7 HOH HOH . K 5 HOH A 6 507 8 HOH HOH . K 5 HOH A 7 508 9 HOH HOH . K 5 HOH A 8 509 10 HOH HOH . K 5 HOH A 9 510 11 HOH HOH . K 5 HOH A 10 511 12 HOH HOH . K 5 HOH A 11 512 13 HOH HOH . K 5 HOH A 12 513 14 HOH HOH . K 5 HOH A 13 514 15 HOH HOH . K 5 HOH A 14 515 16 HOH HOH . K 5 HOH A 15 516 17 HOH HOH . K 5 HOH A 16 517 18 HOH HOH . K 5 HOH A 17 518 19 HOH HOH . K 5 HOH A 18 519 20 HOH HOH . K 5 HOH A 19 520 21 HOH HOH . K 5 HOH A 20 521 23 HOH HOH . K 5 HOH A 21 522 24 HOH HOH . K 5 HOH A 22 523 25 HOH HOH . K 5 HOH A 23 524 26 HOH HOH . K 5 HOH A 24 525 27 HOH HOH . K 5 HOH A 25 526 28 HOH HOH . K 5 HOH A 26 527 29 HOH HOH . K 5 HOH A 27 528 30 HOH HOH . K 5 HOH A 28 529 31 HOH HOH . K 5 HOH A 29 530 32 HOH HOH . K 5 HOH A 30 531 33 HOH HOH . K 5 HOH A 31 532 34 HOH HOH . K 5 HOH A 32 533 35 HOH HOH . K 5 HOH A 33 534 36 HOH HOH . K 5 HOH A 34 535 37 HOH HOH . K 5 HOH A 35 536 40 HOH HOH . K 5 HOH A 36 537 41 HOH HOH . K 5 HOH A 37 538 42 HOH HOH . K 5 HOH A 38 539 43 HOH HOH . K 5 HOH A 39 540 44 HOH HOH . K 5 HOH A 40 541 45 HOH HOH . K 5 HOH A 41 542 46 HOH HOH . K 5 HOH A 42 543 47 HOH HOH . K 5 HOH A 43 544 48 HOH HOH . K 5 HOH A 44 545 49 HOH HOH . K 5 HOH A 45 546 50 HOH HOH . K 5 HOH A 46 547 51 HOH HOH . K 5 HOH A 47 548 52 HOH HOH . K 5 HOH A 48 549 53 HOH HOH . K 5 HOH A 49 550 54 HOH HOH . K 5 HOH A 50 551 55 HOH HOH . K 5 HOH A 51 552 56 HOH HOH . K 5 HOH A 52 553 57 HOH HOH . K 5 HOH A 53 554 58 HOH HOH . K 5 HOH A 54 555 59 HOH HOH . K 5 HOH A 55 556 60 HOH HOH . K 5 HOH A 56 557 62 HOH HOH . K 5 HOH A 57 558 63 HOH HOH . K 5 HOH A 58 559 64 HOH HOH . K 5 HOH A 59 560 65 HOH HOH . K 5 HOH A 60 561 66 HOH HOH . K 5 HOH A 61 562 67 HOH HOH . K 5 HOH A 62 563 68 HOH HOH . K 5 HOH A 63 564 69 HOH HOH . K 5 HOH A 64 565 70 HOH HOH . K 5 HOH A 65 566 71 HOH HOH . K 5 HOH A 66 567 72 HOH HOH . K 5 HOH A 67 568 73 HOH HOH . K 5 HOH A 68 569 74 HOH HOH . K 5 HOH A 69 570 75 HOH HOH . K 5 HOH A 70 571 76 HOH HOH . K 5 HOH A 71 572 77 HOH HOH . K 5 HOH A 72 573 78 HOH HOH . K 5 HOH A 73 574 81 HOH HOH . K 5 HOH A 74 575 82 HOH HOH . K 5 HOH A 75 576 83 HOH HOH . K 5 HOH A 76 577 84 HOH HOH . K 5 HOH A 77 578 85 HOH HOH . K 5 HOH A 78 579 86 HOH HOH . K 5 HOH A 79 580 87 HOH HOH . K 5 HOH A 80 581 88 HOH HOH . K 5 HOH A 81 582 89 HOH HOH . K 5 HOH A 82 583 90 HOH HOH . K 5 HOH A 83 584 91 HOH HOH . K 5 HOH A 84 585 92 HOH HOH . K 5 HOH A 85 586 93 HOH HOH . K 5 HOH A 86 587 94 HOH HOH . K 5 HOH A 87 588 95 HOH HOH . K 5 HOH A 88 589 96 HOH HOH . K 5 HOH A 89 590 97 HOH HOH . K 5 HOH A 90 591 98 HOH HOH . K 5 HOH A 91 592 99 HOH HOH . K 5 HOH A 92 593 100 HOH HOH . K 5 HOH A 93 594 101 HOH HOH . K 5 HOH A 94 595 102 HOH HOH . K 5 HOH A 95 596 103 HOH HOH . K 5 HOH A 96 597 106 HOH HOH . K 5 HOH A 97 598 110 HOH HOH . K 5 HOH A 98 599 115 HOH HOH . K 5 HOH A 99 600 117 HOH HOH . K 5 HOH A 100 601 120 HOH HOH . K 5 HOH A 101 602 123 HOH HOH . K 5 HOH A 102 603 124 HOH HOH . K 5 HOH A 103 604 125 HOH HOH . K 5 HOH A 104 605 128 HOH HOH . K 5 HOH A 105 606 129 HOH HOH . K 5 HOH A 106 607 130 HOH HOH . K 5 HOH A 107 608 3 HOH HOH . K 5 HOH A 108 609 22 HOH HOH . K 5 HOH A 109 610 38 HOH HOH . K 5 HOH A 110 611 39 HOH HOH . K 5 HOH A 111 612 61 HOH HOH . K 5 HOH A 112 613 79 HOH HOH . K 5 HOH A 113 614 80 HOH HOH . L 5 HOH B 1 502 3 HOH HOH . L 5 HOH B 2 503 22 HOH HOH . L 5 HOH B 3 504 38 HOH HOH . L 5 HOH B 4 505 39 HOH HOH . L 5 HOH B 5 506 61 HOH HOH . L 5 HOH B 6 507 79 HOH HOH . L 5 HOH B 7 508 80 HOH HOH . L 5 HOH B 8 509 2 HOH HOH . L 5 HOH B 9 510 4 HOH HOH . L 5 HOH B 10 511 5 HOH HOH . L 5 HOH B 11 512 6 HOH HOH . L 5 HOH B 12 513 7 HOH HOH . L 5 HOH B 13 514 8 HOH HOH . L 5 HOH B 14 515 9 HOH HOH . L 5 HOH B 15 516 10 HOH HOH . L 5 HOH B 16 517 11 HOH HOH . L 5 HOH B 17 518 12 HOH HOH . L 5 HOH B 18 519 13 HOH HOH . L 5 HOH B 19 520 14 HOH HOH . L 5 HOH B 20 521 15 HOH HOH . L 5 HOH B 21 522 16 HOH HOH . L 5 HOH B 22 523 17 HOH HOH . L 5 HOH B 23 524 18 HOH HOH . L 5 HOH B 24 525 19 HOH HOH . L 5 HOH B 25 526 20 HOH HOH . L 5 HOH B 26 527 21 HOH HOH . L 5 HOH B 27 528 23 HOH HOH . L 5 HOH B 28 529 24 HOH HOH . L 5 HOH B 29 530 25 HOH HOH . L 5 HOH B 30 531 26 HOH HOH . L 5 HOH B 31 532 27 HOH HOH . L 5 HOH B 32 533 28 HOH HOH . L 5 HOH B 33 534 29 HOH HOH . L 5 HOH B 34 535 30 HOH HOH . L 5 HOH B 35 536 31 HOH HOH . L 5 HOH B 36 537 32 HOH HOH . L 5 HOH B 37 538 33 HOH HOH . L 5 HOH B 38 539 34 HOH HOH . L 5 HOH B 39 540 35 HOH HOH . L 5 HOH B 40 541 36 HOH HOH . L 5 HOH B 41 542 37 HOH HOH . L 5 HOH B 42 543 40 HOH HOH . L 5 HOH B 43 544 41 HOH HOH . L 5 HOH B 44 545 42 HOH HOH . L 5 HOH B 45 546 43 HOH HOH . L 5 HOH B 46 547 44 HOH HOH . L 5 HOH B 47 548 45 HOH HOH . L 5 HOH B 48 549 46 HOH HOH . L 5 HOH B 49 550 47 HOH HOH . L 5 HOH B 50 551 48 HOH HOH . L 5 HOH B 51 552 49 HOH HOH . L 5 HOH B 52 553 50 HOH HOH . L 5 HOH B 53 554 51 HOH HOH . L 5 HOH B 54 555 52 HOH HOH . L 5 HOH B 55 556 53 HOH HOH . L 5 HOH B 56 557 54 HOH HOH . L 5 HOH B 57 558 55 HOH HOH . L 5 HOH B 58 559 56 HOH HOH . L 5 HOH B 59 560 57 HOH HOH . L 5 HOH B 60 561 58 HOH HOH . L 5 HOH B 61 562 59 HOH HOH . L 5 HOH B 62 563 60 HOH HOH . L 5 HOH B 63 564 62 HOH HOH . L 5 HOH B 64 565 63 HOH HOH . L 5 HOH B 65 566 64 HOH HOH . L 5 HOH B 66 567 65 HOH HOH . L 5 HOH B 67 568 66 HOH HOH . L 5 HOH B 68 569 67 HOH HOH . L 5 HOH B 69 570 68 HOH HOH . L 5 HOH B 70 571 69 HOH HOH . L 5 HOH B 71 572 70 HOH HOH . L 5 HOH B 72 573 71 HOH HOH . L 5 HOH B 73 574 72 HOH HOH . L 5 HOH B 74 575 73 HOH HOH . L 5 HOH B 75 576 74 HOH HOH . L 5 HOH B 76 577 75 HOH HOH . L 5 HOH B 77 578 76 HOH HOH . L 5 HOH B 78 579 77 HOH HOH . L 5 HOH B 79 580 78 HOH HOH . L 5 HOH B 80 581 81 HOH HOH . L 5 HOH B 81 582 82 HOH HOH . L 5 HOH B 82 583 83 HOH HOH . L 5 HOH B 83 584 84 HOH HOH . L 5 HOH B 84 585 85 HOH HOH . L 5 HOH B 85 586 86 HOH HOH . L 5 HOH B 86 587 87 HOH HOH . L 5 HOH B 87 588 88 HOH HOH . L 5 HOH B 88 589 89 HOH HOH . L 5 HOH B 89 590 90 HOH HOH . L 5 HOH B 90 591 91 HOH HOH . L 5 HOH B 91 592 92 HOH HOH . L 5 HOH B 92 593 93 HOH HOH . L 5 HOH B 93 594 94 HOH HOH . L 5 HOH B 94 595 95 HOH HOH . L 5 HOH B 95 596 96 HOH HOH . L 5 HOH B 96 597 97 HOH HOH . L 5 HOH B 97 598 98 HOH HOH . L 5 HOH B 98 599 99 HOH HOH . L 5 HOH B 99 600 104 HOH HOH . L 5 HOH B 100 601 105 HOH HOH . L 5 HOH B 101 602 107 HOH HOH . L 5 HOH B 102 603 108 HOH HOH . L 5 HOH B 103 604 109 HOH HOH . L 5 HOH B 104 605 111 HOH HOH . L 5 HOH B 105 606 112 HOH HOH . L 5 HOH B 106 607 113 HOH HOH . L 5 HOH B 107 608 114 HOH HOH . L 5 HOH B 108 609 116 HOH HOH . L 5 HOH B 109 610 118 HOH HOH . L 5 HOH B 110 611 119 HOH HOH . L 5 HOH B 111 612 121 HOH HOH . L 5 HOH B 112 613 122 HOH HOH . L 5 HOH B 113 614 126 HOH HOH . L 5 HOH B 114 615 127 HOH HOH . L 5 HOH B 115 616 131 HOH HOH . L 5 HOH B 116 617 132 HOH HOH . L 5 HOH B 117 618 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 4 69.172 64.864 62.226 1 19.11 ? S SO4 501 A 1 HETATM 2 O O1 SO4 . . . G 4 69.632 65.234 60.955 1 16.8 ? O1 SO4 501 A 1 HETATM 3 O O2 SO4 . . . G 4 70.044 63.946 62.809 1 21.24 ? O2 SO4 501 A 1 HETATM 4 O O3 SO4 . . . G 4 69.141 66.006 63.053 1 20.72 ? O3 SO4 501 A 1 HETATM 5 O O4 SO4 . . . G 4 67.938 64.164 62.104 1 18.06 ? O4 SO4 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #