data_1AVC # _model_server_result.job_id '_qg4QpzzRgGHnr53sTnJEw' _model_server_result.datetime_utc '2024-12-21 14:23:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1avc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":676}' # _entry.id 1AVC # _exptl.entry_id 1AVC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AVC _cell.length_a 67.404 _cell.length_b 67.404 _cell.length_c 200.078 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 75 A LYS 75 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc2 A O LEU 78 A LEU 78 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc3 A OG1 THR 79 A THR 79 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc4 A OE1 GLU 83 A GLU 83 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.206 ? metalc ? metalc5 A O GLY 188 A GLY 188 1_555 E CA CA . A CA 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc6 A O LYS 191 A LYS 191 1_555 E CA CA . A CA 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.323 ? metalc ? metalc7 A O GLY 193 A GLY 193 1_555 E CA CA . A CA 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc8 A OE1 GLU 233 A GLU 233 1_555 E CA CA . A CA 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc9 A O MET 264 A MET 264 1_555 D CA CA . A CA 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc10 A O GLY 266 A GLY 266 1_555 D CA CA . A CA 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc11 A O GLY 268 A GLY 268 1_555 D CA CA . A CA 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc12 A OD1 ASP 308 A ASP 308 1_555 D CA CA . A CA 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc13 A OD2 ASP 308 A ASP 308 1_555 D CA CA . A CA 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc14 A O MET 376 A MET 376 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc15 A O GLY 378 A GLY 378 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc16 A O LEU 379 A LEU 379 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc17 A O GLY 380 A GLY 380 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc18 A OE1 GLU 420 A GLU 420 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc19 A OE2 GLU 420 A GLU 420 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc20 A O MET 448 A MET 448 1_555 G CA CA . A CA 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc21 A O GLY 450 A GLY 450 1_555 G CA CA . A CA 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc22 A O GLY 452 A GLY 452 1_555 G CA CA . A CA 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc23 A OD1 ASP 492 A ASP 492 1_555 G CA CA . A CA 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc24 A OD2 ASP 492 A ASP 492 1_555 G CA CA . A CA 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc25 A O MET 612 A MET 612 1_555 F CA CA . A CA 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.247 ? metalc ? metalc26 A O GLY 614 A GLY 614 1_555 F CA CA . A CA 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc27 A O GLY 616 A GLY 616 1_555 F CA CA . A CA 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc28 A OG1 THR 617 A THR 617 1_555 F CA CA . A CA 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc29 A OD1 ASP 656 A ASP 656 1_555 F CA CA . A CA 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.234 ? metalc ? metalc30 A OD2 ASP 656 A ASP 656 1_555 F CA CA . A CA 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AVC _atom_sites.fract_transf_matrix[1][1] 0.014836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 674 9 CA CA . C 2 CA A 1 675 23 CA CA . D 2 CA A 1 676 36 CA CA . E 2 CA A 1 677 41 CA CA . F 2 CA A 1 678 67 CA CA . G 2 CA A 1 679 147 CA CA . H 3 HOH A 1 680 1 HOH HOH . H 3 HOH A 2 681 3 HOH HOH . H 3 HOH A 3 682 6 HOH HOH . H 3 HOH A 4 683 7 HOH HOH . H 3 HOH A 5 684 10 HOH HOH . H 3 HOH A 6 685 11 HOH HOH . H 3 HOH A 7 686 12 HOH HOH . H 3 HOH A 8 687 14 HOH HOH . H 3 HOH A 9 688 15 HOH HOH . H 3 HOH A 10 689 16 HOH HOH . H 3 HOH A 11 690 17 HOH HOH . H 3 HOH A 12 691 22 HOH HOH . H 3 HOH A 13 692 24 HOH HOH . H 3 HOH A 14 693 25 HOH HOH . H 3 HOH A 15 694 27 HOH HOH . H 3 HOH A 16 695 30 HOH HOH . H 3 HOH A 17 696 31 HOH HOH . H 3 HOH A 18 697 32 HOH HOH . H 3 HOH A 19 698 33 HOH HOH . H 3 HOH A 20 699 38 HOH HOH . H 3 HOH A 21 700 39 HOH HOH . H 3 HOH A 22 701 40 HOH HOH . H 3 HOH A 23 702 42 HOH HOH . H 3 HOH A 24 703 43 HOH HOH . H 3 HOH A 25 704 44 HOH HOH . H 3 HOH A 26 705 45 HOH HOH . H 3 HOH A 27 706 46 HOH HOH . H 3 HOH A 28 707 48 HOH HOH . H 3 HOH A 29 708 50 HOH HOH . H 3 HOH A 30 709 52 HOH HOH . H 3 HOH A 31 710 53 HOH HOH . H 3 HOH A 32 711 57 HOH HOH . H 3 HOH A 33 712 58 HOH HOH . H 3 HOH A 34 713 60 HOH HOH . H 3 HOH A 35 714 61 HOH HOH . H 3 HOH A 36 715 62 HOH HOH . H 3 HOH A 37 716 63 HOH HOH . H 3 HOH A 38 717 65 HOH HOH . H 3 HOH A 39 718 66 HOH HOH . H 3 HOH A 40 719 68 HOH HOH . H 3 HOH A 41 720 69 HOH HOH . H 3 HOH A 42 721 70 HOH HOH . H 3 HOH A 43 722 71 HOH HOH . H 3 HOH A 44 723 72 HOH HOH . H 3 HOH A 45 724 73 HOH HOH . H 3 HOH A 46 725 74 HOH HOH . H 3 HOH A 47 726 78 HOH HOH . H 3 HOH A 48 727 80 HOH HOH . H 3 HOH A 49 728 81 HOH HOH . H 3 HOH A 50 729 82 HOH HOH . H 3 HOH A 51 730 83 HOH HOH . H 3 HOH A 52 731 85 HOH HOH . H 3 HOH A 53 732 88 HOH HOH . H 3 HOH A 54 733 89 HOH HOH . H 3 HOH A 55 734 91 HOH HOH . H 3 HOH A 56 735 93 HOH HOH . H 3 HOH A 57 736 94 HOH HOH . H 3 HOH A 58 737 95 HOH HOH . H 3 HOH A 59 738 96 HOH HOH . H 3 HOH A 60 739 97 HOH HOH . H 3 HOH A 61 740 99 HOH HOH . H 3 HOH A 62 741 100 HOH HOH . H 3 HOH A 63 742 102 HOH HOH . H 3 HOH A 64 743 103 HOH HOH . H 3 HOH A 65 744 105 HOH HOH . H 3 HOH A 66 745 106 HOH HOH . H 3 HOH A 67 746 107 HOH HOH . H 3 HOH A 68 747 109 HOH HOH . H 3 HOH A 69 748 110 HOH HOH . H 3 HOH A 70 749 112 HOH HOH . H 3 HOH A 71 750 114 HOH HOH . H 3 HOH A 72 751 115 HOH HOH . H 3 HOH A 73 752 116 HOH HOH . H 3 HOH A 74 753 119 HOH HOH . H 3 HOH A 75 754 121 HOH HOH . H 3 HOH A 76 755 122 HOH HOH . H 3 HOH A 77 756 124 HOH HOH . H 3 HOH A 78 757 125 HOH HOH . H 3 HOH A 79 758 126 HOH HOH . H 3 HOH A 80 759 127 HOH HOH . H 3 HOH A 81 760 128 HOH HOH . H 3 HOH A 82 761 130 HOH HOH . H 3 HOH A 83 762 131 HOH HOH . H 3 HOH A 84 763 132 HOH HOH . H 3 HOH A 85 764 133 HOH HOH . H 3 HOH A 86 765 134 HOH HOH . H 3 HOH A 87 766 135 HOH HOH . H 3 HOH A 88 767 136 HOH HOH . H 3 HOH A 89 768 137 HOH HOH . H 3 HOH A 90 769 138 HOH HOH . H 3 HOH A 91 770 140 HOH HOH . H 3 HOH A 92 771 141 HOH HOH . H 3 HOH A 93 772 144 HOH HOH . H 3 HOH A 94 773 146 HOH HOH . H 3 HOH A 95 774 149 HOH HOH . H 3 HOH A 96 775 150 HOH HOH . H 3 HOH A 97 776 151 HOH HOH . H 3 HOH A 98 777 152 HOH HOH . H 3 HOH A 99 778 153 HOH HOH . H 3 HOH A 100 779 156 HOH HOH . H 3 HOH A 101 780 158 HOH HOH . H 3 HOH A 102 781 159 HOH HOH . H 3 HOH A 103 782 161 HOH HOH . H 3 HOH A 104 783 162 HOH HOH . H 3 HOH A 105 784 168 HOH HOH . H 3 HOH A 106 785 170 HOH HOH . H 3 HOH A 107 786 174 HOH HOH . H 3 HOH A 108 787 175 HOH HOH . H 3 HOH A 109 788 180 HOH HOH . H 3 HOH A 110 789 182 HOH HOH . H 3 HOH A 111 790 184 HOH HOH . H 3 HOH A 112 791 188 HOH HOH . H 3 HOH A 113 792 189 HOH HOH . H 3 HOH A 114 793 190 HOH HOH . H 3 HOH A 115 794 192 HOH HOH . H 3 HOH A 116 795 198 HOH HOH . H 3 HOH A 117 796 200 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.417 _atom_site.Cartn_y -20.24 _atom_site.Cartn_z 10.319 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 676 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #