data_1AVD # _model_server_result.job_id V32L8DFVH6Ft4ov9Ry0WsQ _model_server_result.datetime_utc '2024-11-15 10:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1avd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1AVD # _exptl.entry_id 1AVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AVD _cell.length_a 80.15 _cell.length_b 80.15 _cell.length_c 85.28 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 80.15 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 1AVD _atom_sites.fract_transf_matrix[1][1] 0.012477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 600 600 NAG NAG . D 3 BTN A 1 400 400 BTN BTN . E 3 BTN B 1 401 401 BTN BTN . F 4 HOH A 1 505 505 HOH HOH . F 4 HOH A 2 508 508 HOH HOH . F 4 HOH A 3 511 511 HOH HOH . F 4 HOH A 4 516 516 HOH HOH . F 4 HOH A 5 517 517 HOH HOH . F 4 HOH A 6 519 519 HOH HOH . F 4 HOH A 7 520 520 HOH HOH . F 4 HOH A 8 521 521 HOH HOH . F 4 HOH A 9 523 523 HOH HOH . F 4 HOH A 10 527 527 HOH HOH . F 4 HOH A 11 528 528 HOH HOH . F 4 HOH A 12 529 529 HOH HOH . F 4 HOH A 13 530 530 HOH HOH . F 4 HOH A 14 531 531 HOH HOH . F 4 HOH A 15 534 534 HOH HOH . F 4 HOH A 16 539 539 HOH HOH . F 4 HOH A 17 540 540 HOH HOH . F 4 HOH A 18 541 541 HOH HOH . F 4 HOH A 19 542 542 HOH HOH . G 4 HOH B 1 504 504 HOH HOH . G 4 HOH B 2 507 507 HOH HOH . G 4 HOH B 3 509 509 HOH HOH . G 4 HOH B 4 510 510 HOH HOH . G 4 HOH B 5 512 512 HOH HOH . G 4 HOH B 6 513 513 HOH HOH . G 4 HOH B 7 515 515 HOH HOH . G 4 HOH B 8 518 518 HOH HOH . G 4 HOH B 9 522 522 HOH HOH . G 4 HOH B 10 524 524 HOH HOH . G 4 HOH B 11 526 526 HOH HOH . G 4 HOH B 12 533 533 HOH HOH . G 4 HOH B 13 535 535 HOH HOH . G 4 HOH B 14 537 537 HOH HOH . G 4 HOH B 15 538 538 HOH HOH . G 4 HOH B 16 543 543 HOH HOH . G 4 HOH B 17 545 545 HOH HOH . G 4 HOH B 18 546 546 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . D 3 33.347 7.551 14.58 1 90 ? C11 BTN 400 A 1 HETATM 2 O O11 BTN . . . D 3 32.463 6.78 14.309 1 26.97 ? O11 BTN 400 A 1 HETATM 3 O O12 BTN . . . D 3 34.631 7.358 14.257 1 22.93 ? O12 BTN 400 A 1 HETATM 4 C C10 BTN . . . D 3 33.064 8.812 15.357 1 5.67 ? C10 BTN 400 A 1 HETATM 5 C C9 BTN . . . D 3 34.337 9.27 16.14 1 24.45 ? C9 BTN 400 A 1 HETATM 6 C C8 BTN . . . D 3 34.1 10.397 17.155 1 13.99 ? C8 BTN 400 A 1 HETATM 7 C C7 BTN . . . D 3 35.408 11.018 17.703 1 40.7 ? C7 BTN 400 A 1 HETATM 8 C C2 BTN . . . D 3 36.012 10.285 18.933 1 12.79 ? C2 BTN 400 A 1 HETATM 9 S S1 BTN . . . D 3 35.049 10.359 20.469 1 46.22 ? S1 BTN 400 A 1 HETATM 10 C C6 BTN . . . D 3 36.511 9.733 21.328 1 4 ? C6 BTN 400 A 1 HETATM 11 C C5 BTN . . . D 3 37.595 10.645 20.766 1 31.24 ? C5 BTN 400 A 1 HETATM 12 N N1 BTN . . . D 3 37.432 11.964 21.34 1 10.17 ? N1 BTN 400 A 1 HETATM 13 C C3 BTN . . . D 3 37.005 12.897 20.51 1 60.52 ? C3 BTN 400 A 1 HETATM 14 O O3 BTN . . . D 3 36.748 14.066 20.803 1 27.9 ? O3 BTN 400 A 1 HETATM 15 N N2 BTN . . . D 3 36.917 12.344 19.28 1 35.54 ? N2 BTN 400 A 1 HETATM 16 C C4 BTN . . . D 3 37.338 10.937 19.271 1 45.96 ? C4 BTN 400 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #