data_1AVL # _model_server_result.job_id G8G8mCl8h8CHcSI2RXUekQ _model_server_result.datetime_utc '2024-12-28 09:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1avl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":639}' # _entry.id 1AVL # _exptl.entry_id 1AVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.7 _cell.angle_gamma 90 _cell.entry_id 1AVL _cell.length_a 158.2 _cell.length_b 64.1 _cell.length_c 92.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -35.850671 0 85.703789 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 317 A CYS 317 1_555 A SG CYS 343 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A C ASN 381 A ASN 381 1_555 A N TPQ 382 A TPQ 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPQ 382 A TPQ 382 1_555 A N ASP 383 A ASP 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 A O4 TPQ 382 A TPQ 382 1_555 B CU CU . A CU 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc2 A NE2 HIS 431 A HIS 431 1_555 B CU CU . A CU 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 A NE2 HIS 433 A HIS 433 1_555 B CU CU . A CU 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc4 A ND1 HIS 592 A HIS 592 1_555 B CU CU . A CU 639 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AVL _atom_sites.fract_transf_matrix[1][1] 0.006321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002644 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 639 7 CU CU . C 3 HOH A 1 640 1 HOH HOH . C 3 HOH A 2 641 2 HOH HOH . C 3 HOH A 3 642 3 HOH HOH . C 3 HOH A 4 643 4 HOH HOH . C 3 HOH A 5 644 5 HOH HOH . C 3 HOH A 6 645 6 HOH HOH . C 3 HOH A 7 646 9 HOH HOH . C 3 HOH A 8 647 12 HOH HOH . C 3 HOH A 9 648 13 HOH HOH . C 3 HOH A 10 649 14 HOH HOH . C 3 HOH A 11 650 15 HOH HOH . C 3 HOH A 12 651 16 HOH HOH . C 3 HOH A 13 652 18 HOH HOH . C 3 HOH A 14 653 19 HOH HOH . C 3 HOH A 15 654 20 HOH HOH . C 3 HOH A 16 655 21 HOH HOH . C 3 HOH A 17 656 22 HOH HOH . C 3 HOH A 18 657 23 HOH HOH . C 3 HOH A 19 658 25 HOH HOH . C 3 HOH A 20 659 27 HOH HOH . C 3 HOH A 21 660 28 HOH HOH . C 3 HOH A 22 661 29 HOH HOH . C 3 HOH A 23 662 30 HOH HOH . C 3 HOH A 24 663 31 HOH HOH . C 3 HOH A 25 664 33 HOH HOH . C 3 HOH A 26 665 34 HOH HOH . C 3 HOH A 27 666 35 HOH HOH . C 3 HOH A 28 667 36 HOH HOH . C 3 HOH A 29 668 37 HOH HOH . C 3 HOH A 30 669 40 HOH HOH . C 3 HOH A 31 670 44 HOH HOH . C 3 HOH A 32 671 46 HOH HOH . C 3 HOH A 33 672 47 HOH HOH . C 3 HOH A 34 673 48 HOH HOH . C 3 HOH A 35 674 49 HOH HOH . C 3 HOH A 36 675 50 HOH HOH . C 3 HOH A 37 676 52 HOH HOH . C 3 HOH A 38 677 53 HOH HOH . C 3 HOH A 39 678 55 HOH HOH . C 3 HOH A 40 679 56 HOH HOH . C 3 HOH A 41 680 57 HOH HOH . C 3 HOH A 42 681 58 HOH HOH . C 3 HOH A 43 682 61 HOH HOH . C 3 HOH A 44 683 63 HOH HOH . C 3 HOH A 45 684 64 HOH HOH . C 3 HOH A 46 685 68 HOH HOH . C 3 HOH A 47 686 69 HOH HOH . C 3 HOH A 48 687 70 HOH HOH . C 3 HOH A 49 688 71 HOH HOH . C 3 HOH A 50 689 72 HOH HOH . C 3 HOH A 51 690 74 HOH HOH . C 3 HOH A 52 691 75 HOH HOH . C 3 HOH A 53 692 76 HOH HOH . C 3 HOH A 54 693 77 HOH HOH . C 3 HOH A 55 694 78 HOH HOH . C 3 HOH A 56 695 79 HOH HOH . C 3 HOH A 57 696 80 HOH HOH . C 3 HOH A 58 697 82 HOH HOH . C 3 HOH A 59 698 83 HOH HOH . C 3 HOH A 60 699 85 HOH HOH . C 3 HOH A 61 700 86 HOH HOH . C 3 HOH A 62 701 87 HOH HOH . C 3 HOH A 63 702 88 HOH HOH . C 3 HOH A 64 703 89 HOH HOH . C 3 HOH A 65 704 90 HOH HOH . C 3 HOH A 66 705 91 HOH HOH . C 3 HOH A 67 706 93 HOH HOH . C 3 HOH A 68 707 95 HOH HOH . C 3 HOH A 69 708 96 HOH HOH . C 3 HOH A 70 709 97 HOH HOH . C 3 HOH A 71 710 100 HOH HOH . C 3 HOH A 72 711 101 HOH HOH . C 3 HOH A 73 712 104 HOH HOH . C 3 HOH A 74 713 107 HOH HOH . C 3 HOH A 75 714 108 HOH HOH . C 3 HOH A 76 715 109 HOH HOH . C 3 HOH A 77 716 110 HOH HOH . C 3 HOH A 78 717 111 HOH HOH . C 3 HOH A 79 718 113 HOH HOH . C 3 HOH A 80 719 116 HOH HOH . C 3 HOH A 81 720 117 HOH HOH . C 3 HOH A 82 721 122 HOH HOH . C 3 HOH A 83 722 123 HOH HOH . C 3 HOH A 84 723 124 HOH HOH . C 3 HOH A 85 724 125 HOH HOH . C 3 HOH A 86 725 127 HOH HOH . C 3 HOH A 87 726 128 HOH HOH . C 3 HOH A 88 727 129 HOH HOH . C 3 HOH A 89 728 131 HOH HOH . C 3 HOH A 90 729 132 HOH HOH . C 3 HOH A 91 730 133 HOH HOH . C 3 HOH A 92 731 135 HOH HOH . C 3 HOH A 93 732 136 HOH HOH . C 3 HOH A 94 733 137 HOH HOH . C 3 HOH A 95 734 138 HOH HOH . C 3 HOH A 96 735 139 HOH HOH . C 3 HOH A 97 736 140 HOH HOH . C 3 HOH A 98 737 141 HOH HOH . C 3 HOH A 99 738 142 HOH HOH . C 3 HOH A 100 739 144 HOH HOH . C 3 HOH A 101 740 145 HOH HOH . C 3 HOH A 102 741 148 HOH HOH . C 3 HOH A 103 742 153 HOH HOH . C 3 HOH A 104 743 155 HOH HOH . C 3 HOH A 105 744 157 HOH HOH . C 3 HOH A 106 745 159 HOH HOH . C 3 HOH A 107 746 161 HOH HOH . C 3 HOH A 108 747 162 HOH HOH . C 3 HOH A 109 748 164 HOH HOH . C 3 HOH A 110 749 165 HOH HOH . C 3 HOH A 111 750 167 HOH HOH . C 3 HOH A 112 751 173 HOH HOH . C 3 HOH A 113 752 176 HOH HOH . C 3 HOH A 114 753 180 HOH HOH . C 3 HOH A 115 754 181 HOH HOH . C 3 HOH A 116 755 184 HOH HOH . C 3 HOH A 117 756 188 HOH HOH . C 3 HOH A 118 757 190 HOH HOH . C 3 HOH A 119 758 192 HOH HOH . C 3 HOH A 120 759 194 HOH HOH . C 3 HOH A 121 760 195 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.888 _atom_site.Cartn_y -1.965 _atom_site.Cartn_z 27.99 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 639 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #