data_1AVT # _model_server_result.job_id KgUkjwAUF0yyCZ1SGswqzA _model_server_result.datetime_utc '2025-02-27 01:51:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1avt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1AVT # _exptl.entry_id 1AVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AVT _cell.length_a 53 _cell.length_b 55.4 _cell.length_c 76.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 219 A THR 220 1_555 A N CLD 220 A CLD 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C CLD 220 A CLD 221 1_555 A N MET 221 A MET 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A NE2 GLN 2 A GLN 2 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A OD1 ASP 41 A ASP 41 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc4 A O LEU 74 A LEU 75 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 A OD1 ASN 76 A ASN 77 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 A O THR 78 A THR 79 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc7 A O VAL 80 A VAL 81 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc8 A O ALA 168 A ALA 169 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 A O TYR 170 A TYR 171 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc10 A O VAL 173 A VAL 174 1_555 B NA NA . A NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc11 B NA NA . A NA 300 1_555 D O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc12 B NA NA . A NA 300 1_555 D O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AVT _atom_sites.fract_transf_matrix[1][1] 0.018868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 300 300 NA NA . C 2 NA A 1 301 301 NA NA . D 3 HOH A 1 302 302 HOH HOH . D 3 HOH A 2 303 303 HOH HOH . D 3 HOH A 3 304 304 HOH HOH . D 3 HOH A 4 305 305 HOH HOH . D 3 HOH A 5 306 306 HOH HOH . D 3 HOH A 6 307 307 HOH HOH . D 3 HOH A 7 308 308 HOH HOH . D 3 HOH A 8 309 309 HOH HOH . D 3 HOH A 9 310 310 HOH HOH . D 3 HOH A 10 311 311 HOH HOH . D 3 HOH A 11 312 312 HOH HOH . D 3 HOH A 12 313 313 HOH HOH . D 3 HOH A 13 314 314 HOH HOH . D 3 HOH A 14 315 315 HOH HOH . D 3 HOH A 15 316 316 HOH HOH . D 3 HOH A 16 317 317 HOH HOH . D 3 HOH A 17 318 318 HOH HOH . D 3 HOH A 18 319 319 HOH HOH . D 3 HOH A 19 320 320 HOH HOH . D 3 HOH A 20 321 321 HOH HOH . D 3 HOH A 21 322 322 HOH HOH . D 3 HOH A 22 323 323 HOH HOH . D 3 HOH A 23 324 324 HOH HOH . D 3 HOH A 24 325 325 HOH HOH . D 3 HOH A 25 326 326 HOH HOH . D 3 HOH A 26 327 327 HOH HOH . D 3 HOH A 27 328 328 HOH HOH . D 3 HOH A 28 329 329 HOH HOH . D 3 HOH A 29 330 330 HOH HOH . D 3 HOH A 30 331 331 HOH HOH . D 3 HOH A 31 332 332 HOH HOH . D 3 HOH A 32 333 333 HOH HOH . D 3 HOH A 33 334 334 HOH HOH . D 3 HOH A 34 335 335 HOH HOH . D 3 HOH A 35 336 336 HOH HOH . D 3 HOH A 36 337 337 HOH HOH . D 3 HOH A 37 338 338 HOH HOH . D 3 HOH A 38 339 339 HOH HOH . D 3 HOH A 39 340 340 HOH HOH . D 3 HOH A 40 341 341 HOH HOH . D 3 HOH A 41 342 342 HOH HOH . D 3 HOH A 42 343 343 HOH HOH . D 3 HOH A 43 344 344 HOH HOH . D 3 HOH A 44 345 345 HOH HOH . D 3 HOH A 45 346 346 HOH HOH . D 3 HOH A 46 347 347 HOH HOH . D 3 HOH A 47 348 348 HOH HOH . D 3 HOH A 48 349 349 HOH HOH . D 3 HOH A 49 350 350 HOH HOH . D 3 HOH A 50 351 351 HOH HOH . D 3 HOH A 51 352 352 HOH HOH . D 3 HOH A 52 353 353 HOH HOH . D 3 HOH A 53 354 354 HOH HOH . D 3 HOH A 54 355 355 HOH HOH . D 3 HOH A 55 356 356 HOH HOH . D 3 HOH A 56 357 357 HOH HOH . D 3 HOH A 57 358 358 HOH HOH . D 3 HOH A 58 359 359 HOH HOH . D 3 HOH A 59 360 360 HOH HOH . D 3 HOH A 60 361 361 HOH HOH . D 3 HOH A 61 362 362 HOH HOH . D 3 HOH A 62 363 363 HOH HOH . D 3 HOH A 63 364 364 HOH HOH . D 3 HOH A 64 365 365 HOH HOH . D 3 HOH A 65 366 366 HOH HOH . D 3 HOH A 66 367 367 HOH HOH . D 3 HOH A 67 368 368 HOH HOH . D 3 HOH A 68 369 369 HOH HOH . D 3 HOH A 69 370 370 HOH HOH . D 3 HOH A 70 371 371 HOH HOH . D 3 HOH A 71 372 372 HOH HOH . D 3 HOH A 72 373 373 HOH HOH . D 3 HOH A 73 374 374 HOH HOH . D 3 HOH A 74 375 375 HOH HOH . D 3 HOH A 75 376 376 HOH HOH . D 3 HOH A 76 377 377 HOH HOH . D 3 HOH A 77 378 378 HOH HOH . D 3 HOH A 78 379 379 HOH HOH . D 3 HOH A 79 380 380 HOH HOH . D 3 HOH A 80 381 381 HOH HOH . D 3 HOH A 81 382 382 HOH HOH . D 3 HOH A 82 383 383 HOH HOH . D 3 HOH A 83 384 384 HOH HOH . D 3 HOH A 84 385 385 HOH HOH . D 3 HOH A 85 386 386 HOH HOH . D 3 HOH A 86 387 387 HOH HOH . D 3 HOH A 87 388 388 HOH HOH . D 3 HOH A 88 389 389 HOH HOH . D 3 HOH A 89 390 390 HOH HOH . D 3 HOH A 90 391 391 HOH HOH . D 3 HOH A 91 392 392 HOH HOH . D 3 HOH A 92 393 393 HOH HOH . D 3 HOH A 93 394 394 HOH HOH . D 3 HOH A 94 395 395 HOH HOH . D 3 HOH A 95 396 396 HOH HOH . D 3 HOH A 96 397 397 HOH HOH . D 3 HOH A 97 398 398 HOH HOH . D 3 HOH A 98 399 399 HOH HOH . D 3 HOH A 99 400 400 HOH HOH . D 3 HOH A 100 401 401 HOH HOH . D 3 HOH A 101 402 402 HOH HOH . D 3 HOH A 102 403 403 HOH HOH . D 3 HOH A 103 404 404 HOH HOH . D 3 HOH A 104 405 405 HOH HOH . D 3 HOH A 105 406 406 HOH HOH . D 3 HOH A 106 407 407 HOH HOH . D 3 HOH A 107 408 408 HOH HOH . D 3 HOH A 108 409 409 HOH HOH . D 3 HOH A 109 410 410 HOH HOH . D 3 HOH A 110 411 411 HOH HOH . D 3 HOH A 111 412 412 HOH HOH . D 3 HOH A 112 413 413 HOH HOH . D 3 HOH A 113 414 414 HOH HOH . D 3 HOH A 114 415 415 HOH HOH . D 3 HOH A 115 416 416 HOH HOH . D 3 HOH A 116 417 417 HOH HOH . D 3 HOH A 117 418 418 HOH HOH . D 3 HOH A 118 419 419 HOH HOH . D 3 HOH A 119 420 420 HOH HOH . D 3 HOH A 120 421 421 HOH HOH . D 3 HOH A 121 422 422 HOH HOH . D 3 HOH A 122 423 423 HOH HOH . D 3 HOH A 123 424 424 HOH HOH . D 3 HOH A 124 425 425 HOH HOH . D 3 HOH A 125 426 426 HOH HOH . D 3 HOH A 126 427 427 HOH HOH . D 3 HOH A 127 428 428 HOH HOH . D 3 HOH A 128 429 429 HOH HOH . D 3 HOH A 129 430 430 HOH HOH . D 3 HOH A 130 431 431 HOH HOH . D 3 HOH A 131 432 432 HOH HOH . D 3 HOH A 132 433 433 HOH HOH . D 3 HOH A 133 434 434 HOH HOH . D 3 HOH A 134 435 435 HOH HOH . D 3 HOH A 135 436 436 HOH HOH . D 3 HOH A 136 437 437 HOH HOH . D 3 HOH A 137 438 438 HOH HOH . D 3 HOH A 138 439 439 HOH HOH . D 3 HOH A 139 440 440 HOH HOH . D 3 HOH A 140 441 441 HOH HOH . D 3 HOH A 141 442 442 HOH HOH . D 3 HOH A 142 443 443 HOH HOH . D 3 HOH A 143 444 444 HOH HOH . D 3 HOH A 144 445 445 HOH HOH . D 3 HOH A 145 446 446 HOH HOH . D 3 HOH A 146 447 447 HOH HOH . D 3 HOH A 147 448 448 HOH HOH . D 3 HOH A 148 449 449 HOH HOH . D 3 HOH A 149 450 450 HOH HOH . D 3 HOH A 150 451 451 HOH HOH . D 3 HOH A 151 452 452 HOH HOH . D 3 HOH A 152 453 453 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.833 _atom_site.Cartn_y -4.207 _atom_site.Cartn_z 33.25 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #