data_1AW4 # _model_server_result.job_id nG1hrnYJ7Bx6m1unXzHBGw _model_server_result.datetime_utc '2025-03-06 05:58:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":28}' # _entry.id 1AW4 # _exptl.entry_id 1AW4 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AW4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 1 A DA 1 1_555 A N3 DT 27 A DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 A DA 1 1_555 A O4 DT 27 A DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 2 A DC 2 1_555 A N1 DG 26 A DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 2 A DC 2 1_555 A O6 DG 26 A DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 2 A DC 2 1_555 A N2 DG 26 A DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 3 A DC 3 1_555 A N1 DG 25 A DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 3 A DC 3 1_555 A O6 DG 25 A DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 3 A DC 3 1_555 A N2 DG 25 A DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 A N1 DA 24 A DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 A N6 DA 24 A DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog11 A N2 DG 5 A DG 5 1_555 A N7 DA 23 A DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog12 A N3 DG 5 A DG 5 1_555 A N6 DA 23 A DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog13 A N7 DG 6 A DG 6 1_555 A N1 DG 21 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog14 A O6 DG 6 A DG 6 1_555 A N2 DG 21 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog15 A N1 DG 8 A DG 8 1_555 A N7 DG 19 A DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog16 A N2 DG 8 A DG 8 1_555 A O6 DG 19 A DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog17 A N6 DA 10 A DA 10 1_555 A N3 DG 18 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog18 A N7 DA 10 A DA 10 1_555 A N2 DG 18 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 11 A DG 11 1_555 A N3 DC 17 A DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 11 A DG 11 1_555 A O2 DC 17 A DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 11 A DG 11 1_555 A N4 DC 17 A DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog22 A N3 DT 12 A DT 12 1_555 A O6 DG 16 A DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog23 A O2 DT 12 A DT 12 1_555 A N1 DG 16 A DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 1 n n P O2P AMP sing 2 n n P O3P AMP sing 3 n n P O5' AMP sing 4 n n O2P HOP2 AMP sing 5 n n O3P HOP3 AMP sing 6 n n O5' C5' AMP sing 7 n n C5' C4' AMP sing 8 n n C5' "H5'1" AMP sing 9 n n C5' "H5'2" AMP sing 10 n n C4' O4' AMP sing 11 n n C4' C3' AMP sing 12 n n C4' H4' AMP sing 13 n n O4' C1' AMP sing 14 n n C3' O3' AMP sing 15 n n C3' C2' AMP sing 16 n n C3' H3' AMP sing 17 n n O3' HO3' AMP sing 18 n n C2' O2' AMP sing 19 n n C2' C1' AMP sing 20 n n C2' H2' AMP sing 21 n n O2' HO2' AMP sing 22 n n C1' N9 AMP sing 23 n n C1' H1' AMP sing 24 n n N9 C8 AMP sing 25 n y N9 C4 AMP sing 26 n y C8 N7 AMP doub 27 n y C8 H8 AMP sing 28 n n N7 C5 AMP sing 29 n y C5 C6 AMP sing 30 n y C5 C4 AMP doub 31 n y C6 N6 AMP sing 32 n n C6 N1 AMP doub 33 n y N6 HN61 AMP sing 34 n n N6 HN62 AMP sing 35 n n N1 C2 AMP sing 36 n y C2 N3 AMP doub 37 n y C2 H2 AMP sing 38 n n N3 C4 AMP sing 39 n y # _atom_sites.entry_id 1AW4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 28 1 AMP AMP . C 2 AMP A 1 29 2 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -13.136 0.12 -4.245 1 0.5 ? P AMP 28 A 1 HETATM 2 O O1P AMP . . . B 2 -12.393 1.107 -5.058 1 0.78 ? O1P AMP 28 A 1 HETATM 3 O O2P AMP . . . B 2 -14.288 -0.51 -4.927 1 0.84 ? O2P AMP 28 A 1 HETATM 4 O O3P AMP . . . B 2 -13.357 0.531 -2.836 1 0.5 ? O3P AMP 28 A 1 HETATM 5 O O5' AMP . . . B 2 -12.061 -1.096 -4.113 1 0.37 ? O5' AMP 28 A 1 HETATM 6 C C5' AMP . . . B 2 -11.293 -1.38 -2.921 1 0.35 ? C5' AMP 28 A 1 HETATM 7 C C4' AMP . . . B 2 -9.991 -0.562 -2.769 1 0.3 ? C4' AMP 28 A 1 HETATM 8 O O4' AMP . . . B 2 -8.937 -0.842 -3.715 1 0.28 ? O4' AMP 28 A 1 HETATM 9 C C3' AMP . . . B 2 -10.208 0.928 -2.911 1 0.3 ? C3' AMP 28 A 1 HETATM 10 O O3' AMP . . . B 2 -11.095 1.489 -1.932 1 0.41 ? O3' AMP 28 A 1 HETATM 11 C C2' AMP . . . B 2 -8.75 1.374 -2.851 1 0.29 ? C2' AMP 28 A 1 HETATM 12 O O2' AMP . . . B 2 -8.265 1.414 -1.5 1 0.36 ? O2' AMP 28 A 1 HETATM 13 C C1' AMP . . . B 2 -8.073 0.32 -3.745 1 0.25 ? C1' AMP 28 A 1 HETATM 14 N N9 AMP . . . B 2 -7.818 0.803 -5.127 1 0.24 ? N9 AMP 28 A 1 HETATM 15 C C8 AMP . . . B 2 -8.638 0.814 -6.223 1 0.27 ? C8 AMP 28 A 1 HETATM 16 N N7 AMP . . . B 2 -8.047 1.326 -7.33 1 0.25 ? N7 AMP 28 A 1 HETATM 17 C C5 AMP . . . B 2 -6.798 1.651 -6.903 1 0.23 ? C5 AMP 28 A 1 HETATM 18 C C6 AMP . . . B 2 -5.673 2.226 -7.53 1 0.23 ? C6 AMP 28 A 1 HETATM 19 N N6 AMP . . . B 2 -5.497 2.652 -8.748 1 0.24 ? N6 AMP 28 A 1 HETATM 20 N N1 AMP . . . B 2 -4.569 2.418 -6.827 1 0.24 ? N1 AMP 28 A 1 HETATM 21 C C2 AMP . . . B 2 -4.566 2.07 -5.563 1 0.23 ? C2 AMP 28 A 1 HETATM 22 N N3 AMP . . . B 2 -5.531 1.532 -4.831 1 0.23 ? N3 AMP 28 A 1 HETATM 23 C C4 AMP . . . B 2 -6.642 1.343 -5.577 1 0.22 ? C4 AMP 28 A 1 HETATM 24 H "H5'1" AMP . . . B 2 -11.041 -2.44 -2.897 1 0.42 ? "H5'1" AMP 28 A 1 HETATM 25 H "H5'2" AMP . . . B 2 -11.926 -1.157 -2.061 1 0.45 ? "H5'2" AMP 28 A 1 HETATM 26 H H4' AMP . . . B 2 -9.602 -0.704 -1.766 1 0.36 ? H4' AMP 28 A 1 HETATM 27 H H3' AMP . . . B 2 -10.641 1.039 -3.895 1 0.37 ? H3' AMP 28 A 1 HETATM 28 H HO3' AMP . . . B 2 -11.978 1.155 -2.192 1 0.44 ? HO3' AMP 28 A 1 HETATM 29 H H2' AMP . . . B 2 -8.538 2.362 -3.246 1 0.29 ? H2' AMP 28 A 1 HETATM 30 H HO2' AMP . . . B 2 -8.474 2.323 -1.221 1 0.64 ? HO2' AMP 28 A 1 HETATM 31 H H1' AMP . . . B 2 -7.117 0.055 -3.284 1 0.29 ? H1' AMP 28 A 1 HETATM 32 H H8 AMP . . . B 2 -9.665 0.446 -6.213 1 0.28 ? H8 AMP 28 A 1 HETATM 33 H HN61 AMP . . . B 2 -5.936 2.511 -9.636 1 0.28 ? HN61 AMP 28 A 1 HETATM 34 H HN62 AMP . . . B 2 -4.725 3.298 -8.845 1 0.3 ? HN62 AMP 28 A 1 HETATM 35 H H2 AMP . . . B 2 -3.602 2.248 -5.123 1 0.25 ? H2 AMP 28 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 1685 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #