data_1AX9 # _model_server_result.job_id bZYTJ74KzOy_MIx-SrPzQA _model_server_result.datetime_utc '2024-12-05 12:38:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ax9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 1AX9 # _exptl.entry_id 1AX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.24 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'EDROPHONIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1AX9 _cell.length_a 113 _cell.length_b 113 _cell.length_c 136.9 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 136.9 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C10 H16 N O 1' _chem_comp.formula_weight 166.24 _chem_comp.id EDR _chem_comp.mon_nstd_flag . _chem_comp.name 'EDROPHONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EDR doub 83 n y C1 C6 EDR sing 84 n y C1 H1 EDR sing 85 n n C2 C3 EDR sing 86 n y C2 N2 EDR sing 87 n n C3 C4 EDR doub 88 n y C3 H3 EDR sing 89 n n C4 C5 EDR sing 90 n y C4 O4 EDR sing 91 n n C5 C6 EDR doub 92 n y C5 H5 EDR sing 93 n n C6 H6 EDR sing 94 n n O4 HO4 EDR sing 95 n n N2 C7 EDR sing 96 n n N2 C8 EDR sing 97 n n N2 C9 EDR sing 98 n n C7 H71 EDR sing 99 n n C7 H72 EDR sing 100 n n C7 H73 EDR sing 101 n n C8 H81 EDR sing 102 n n C8 H82 EDR sing 103 n n C8 H83 EDR sing 104 n n C9 C10 EDR sing 105 n n C9 H91 EDR sing 106 n n C9 H92 EDR sing 107 n n C10 H101 EDR sing 108 n n C10 H102 EDR sing 109 n n C10 H103 EDR sing 110 n n # _atom_sites.entry_id 1AX9 _atom_sites.fract_transf_matrix[1][1] 0.00885 _atom_sites.fract_transf_matrix[1][2] 0.005109 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDR A 1 999 999 EDR EDR . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 606 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 610 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 612 HOH HOH . C 3 HOH A 13 613 613 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 616 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 618 HOH HOH . C 3 HOH A 19 619 619 HOH HOH . C 3 HOH A 20 620 620 HOH HOH . C 3 HOH A 21 621 621 HOH HOH . C 3 HOH A 22 622 622 HOH HOH . C 3 HOH A 23 623 623 HOH HOH . C 3 HOH A 24 624 624 HOH HOH . C 3 HOH A 25 625 625 HOH HOH . C 3 HOH A 26 626 626 HOH HOH . C 3 HOH A 27 627 627 HOH HOH . C 3 HOH A 28 628 628 HOH HOH . C 3 HOH A 29 629 629 HOH HOH . C 3 HOH A 30 630 630 HOH HOH . C 3 HOH A 31 631 631 HOH HOH . C 3 HOH A 32 632 632 HOH HOH . C 3 HOH A 33 633 633 HOH HOH . C 3 HOH A 34 634 634 HOH HOH . C 3 HOH A 35 635 635 HOH HOH . C 3 HOH A 36 636 636 HOH HOH . C 3 HOH A 37 637 637 HOH HOH . C 3 HOH A 38 638 638 HOH HOH . C 3 HOH A 39 639 639 HOH HOH . C 3 HOH A 40 640 640 HOH HOH . C 3 HOH A 41 641 641 HOH HOH . C 3 HOH A 42 642 642 HOH HOH . C 3 HOH A 43 643 643 HOH HOH . C 3 HOH A 44 644 644 HOH HOH . C 3 HOH A 45 645 645 HOH HOH . C 3 HOH A 46 646 646 HOH HOH . C 3 HOH A 47 647 647 HOH HOH . C 3 HOH A 48 648 648 HOH HOH . C 3 HOH A 49 649 649 HOH HOH . C 3 HOH A 50 650 650 HOH HOH . C 3 HOH A 51 651 651 HOH HOH . C 3 HOH A 52 652 652 HOH HOH . C 3 HOH A 53 653 653 HOH HOH . C 3 HOH A 54 654 654 HOH HOH . C 3 HOH A 55 655 655 HOH HOH . C 3 HOH A 56 656 656 HOH HOH . C 3 HOH A 57 657 657 HOH HOH . C 3 HOH A 58 658 658 HOH HOH . C 3 HOH A 59 659 659 HOH HOH . C 3 HOH A 60 660 660 HOH HOH . C 3 HOH A 61 661 661 HOH HOH . C 3 HOH A 62 662 662 HOH HOH . C 3 HOH A 63 663 663 HOH HOH . C 3 HOH A 64 664 664 HOH HOH . C 3 HOH A 65 665 665 HOH HOH . C 3 HOH A 66 666 666 HOH HOH . C 3 HOH A 67 667 667 HOH HOH . C 3 HOH A 68 668 668 HOH HOH . C 3 HOH A 69 669 669 HOH HOH . C 3 HOH A 70 670 670 HOH HOH . C 3 HOH A 71 671 671 HOH HOH . C 3 HOH A 72 672 672 HOH HOH . C 3 HOH A 73 673 673 HOH HOH . C 3 HOH A 74 674 674 HOH HOH . C 3 HOH A 75 675 675 HOH HOH . C 3 HOH A 76 676 676 HOH HOH . C 3 HOH A 77 677 677 HOH HOH . C 3 HOH A 78 678 678 HOH HOH . C 3 HOH A 79 679 679 HOH HOH . C 3 HOH A 80 680 680 HOH HOH . C 3 HOH A 81 681 681 HOH HOH . C 3 HOH A 82 682 682 HOH HOH . C 3 HOH A 83 683 683 HOH HOH . C 3 HOH A 84 684 684 HOH HOH . C 3 HOH A 85 685 685 HOH HOH . C 3 HOH A 86 686 686 HOH HOH . C 3 HOH A 87 687 687 HOH HOH . C 3 HOH A 88 688 688 HOH HOH . C 3 HOH A 89 689 689 HOH HOH . C 3 HOH A 90 690 690 HOH HOH . C 3 HOH A 91 691 691 HOH HOH . C 3 HOH A 92 692 692 HOH HOH . C 3 HOH A 93 693 693 HOH HOH . C 3 HOH A 94 694 694 HOH HOH . C 3 HOH A 95 695 695 HOH HOH . C 3 HOH A 96 696 696 HOH HOH . C 3 HOH A 97 697 697 HOH HOH . C 3 HOH A 98 698 698 HOH HOH . C 3 HOH A 99 699 699 HOH HOH . C 3 HOH A 100 700 700 HOH HOH . C 3 HOH A 101 701 701 HOH HOH . C 3 HOH A 102 702 702 HOH HOH . C 3 HOH A 103 703 703 HOH HOH . C 3 HOH A 104 704 704 HOH HOH . C 3 HOH A 105 705 705 HOH HOH . C 3 HOH A 106 706 706 HOH HOH . C 3 HOH A 107 707 707 HOH HOH . C 3 HOH A 108 708 708 HOH HOH . C 3 HOH A 109 709 709 HOH HOH . C 3 HOH A 110 710 710 HOH HOH . C 3 HOH A 111 711 711 HOH HOH . C 3 HOH A 112 712 712 HOH HOH . C 3 HOH A 113 713 713 HOH HOH . C 3 HOH A 114 714 714 HOH HOH . C 3 HOH A 115 715 715 HOH HOH . C 3 HOH A 116 716 716 HOH HOH . C 3 HOH A 117 717 717 HOH HOH . C 3 HOH A 118 718 718 HOH HOH . C 3 HOH A 119 719 719 HOH HOH . C 3 HOH A 120 720 720 HOH HOH . C 3 HOH A 121 721 721 HOH HOH . C 3 HOH A 122 722 722 HOH HOH . C 3 HOH A 123 723 723 HOH HOH . C 3 HOH A 124 724 724 HOH HOH . C 3 HOH A 125 725 725 HOH HOH . C 3 HOH A 126 726 726 HOH HOH . C 3 HOH A 127 727 727 HOH HOH . C 3 HOH A 128 728 728 HOH HOH . C 3 HOH A 129 729 729 HOH HOH . C 3 HOH A 130 730 730 HOH HOH . C 3 HOH A 131 731 731 HOH HOH . C 3 HOH A 132 732 732 HOH HOH . C 3 HOH A 133 733 733 HOH HOH . C 3 HOH A 134 734 734 HOH HOH . C 3 HOH A 135 735 735 HOH HOH . C 3 HOH A 136 736 736 HOH HOH . C 3 HOH A 137 737 737 HOH HOH . C 3 HOH A 138 738 738 HOH HOH . C 3 HOH A 139 739 739 HOH HOH . C 3 HOH A 140 740 740 HOH HOH . C 3 HOH A 141 741 741 HOH HOH . C 3 HOH A 142 742 742 HOH HOH . C 3 HOH A 143 743 743 HOH HOH . C 3 HOH A 144 744 744 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDR . . . B 2 3.405 66.734 64.289 1 31.11 ? C1 EDR 999 A 1 HETATM 2 C C2 EDR . . . B 2 4.33 67.279 63.417 1 31.41 ? C2 EDR 999 A 1 HETATM 3 C C3 EDR . . . B 2 5.185 66.383 62.786 1 31.35 ? C3 EDR 999 A 1 HETATM 4 C C4 EDR . . . B 2 5.129 65.005 62.987 1 31.23 ? C4 EDR 999 A 1 HETATM 5 C C5 EDR . . . B 2 4.192 64.485 63.868 1 31.15 ? C5 EDR 999 A 1 HETATM 6 C C6 EDR . . . B 2 3.327 65.354 64.514 1 31.08 ? C6 EDR 999 A 1 HETATM 7 O O4 EDR . . . B 2 5.981 64.149 62.351 1 31.19 ? O4 EDR 999 A 1 HETATM 8 N N2 EDR . . . B 2 4.466 68.731 63.119 1 31.65 ? N2 EDR 999 A 1 HETATM 9 C C7 EDR . . . B 2 5.273 69.015 61.832 1 31.6 ? C7 EDR 999 A 1 HETATM 10 C C8 EDR . . . B 2 3.032 69.289 62.91 1 31.86 ? C8 EDR 999 A 1 HETATM 11 C C9 EDR . . . B 2 5.162 69.404 64.326 1 31.96 ? C9 EDR 999 A 1 HETATM 12 C C10 EDR . . . B 2 6.499 68.778 64.859 1 32.46 ? C10 EDR 999 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #