data_1AXA # _model_server_result.job_id RGJz328e1xd8XxRrgcmAIA _model_server_result.datetime_utc '2024-10-12 14:29:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1axa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 1AXA # _exptl.entry_id 1AXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.762 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[[1-[N-ACETAMIDYL]-[1-CYCLOHEXYLMETHYL-2-HYDROXY-4-ISOPROPYL]-BUT-4-YL]-CARBONYL]-GLUTAMINYL-ARGINYL-AMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1AXA _cell.length_a 63.554 _cell.length_b 63.554 _cell.length_c 83.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H52 N8 O6' _chem_comp.formula_weight 596.762 _chem_comp.id U0E _chem_comp.mon_nstd_flag . _chem_comp.name N-[[1-[N-ACETAMIDYL]-[1-CYCLOHEXYLMETHYL-2-HYDROXY-4-ISOPROPYL]-BUT-4-YL]-CARBONYL]-GLUTAMINYL-ARGINYL-AMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U0E sing 358 n n C1 H11A U0E sing 359 n n C1 H12 U0E sing 360 n n C1 H13A U0E sing 361 n n C2 N1 U0E sing 362 n n C2 O1 U0E doub 363 n n C3 C4 U0E sing 364 n n C3 C11 U0E sing 365 n n C3 N1 U0E sing 366 n n C3 H3 U0E sing 367 n n C4 C5 U0E sing 368 n n C4 H41 U0E sing 369 n n C4 H42 U0E sing 370 n n C5 C6 U0E sing 371 n n C5 C10 U0E sing 372 n n C5 H5 U0E sing 373 n n C6 C7 U0E sing 374 n n C6 H61 U0E sing 375 n n C6 H62 U0E sing 376 n n C7 C8 U0E sing 377 n n C7 H71 U0E sing 378 n n C7 H72 U0E sing 379 n n C8 C9 U0E sing 380 n n C8 H81 U0E sing 381 n n C8 H82 U0E sing 382 n n C9 C10 U0E sing 383 n n C9 H91 U0E sing 384 n n C9 H92 U0E sing 385 n n C10 H101 U0E sing 386 n n C10 H102 U0E sing 387 n n C11 C12 U0E sing 388 n n C11 O2 U0E sing 389 n n C11 H11 U0E sing 390 n n C12 C13 U0E sing 391 n n C12 H121 U0E sing 392 n n C12 H122 U0E sing 393 n n C13 C14 U0E sing 394 n n C13 C17 U0E sing 395 n n C13 H13 U0E sing 396 n n C14 C15 U0E sing 397 n n C14 C16 U0E sing 398 n n C14 H14 U0E sing 399 n n C15 H151 U0E sing 400 n n C15 H152 U0E sing 401 n n C15 H153 U0E sing 402 n n C16 H161 U0E sing 403 n n C16 H162 U0E sing 404 n n C16 H163 U0E sing 405 n n C17 N2 U0E sing 406 n n C17 O3 U0E doub 407 n n C18 C19 U0E sing 408 n n C18 C22 U0E sing 409 n n C18 N2 U0E sing 410 n n C18 H18 U0E sing 411 n n C19 C20 U0E sing 412 n n C19 H191 U0E sing 413 n n C19 H192 U0E sing 414 n n C20 C21 U0E sing 415 n n C20 H201 U0E sing 416 n n C20 H202 U0E sing 417 n n C21 N3 U0E sing 418 n n C21 O4 U0E doub 419 n n C22 N4 U0E sing 420 n n C22 O5 U0E doub 421 n n C23 C24 U0E sing 422 n n C23 C25 U0E sing 423 n n C23 N4 U0E sing 424 n n C23 H23 U0E sing 425 n n C24 N5 U0E sing 426 n n C24 O6 U0E doub 427 n n C25 C26 U0E sing 428 n n C25 H251 U0E sing 429 n n C25 H252 U0E sing 430 n n C26 C27 U0E sing 431 n n C26 H261 U0E sing 432 n n C26 H262 U0E sing 433 n n C27 N6 U0E sing 434 n n C27 H271 U0E sing 435 n n C27 H272 U0E sing 436 n n C28 N6 U0E sing 437 n n C28 N7 U0E doub 438 n n C28 N8 U0E sing 439 n n N1 HN1 U0E sing 440 n n N2 HN2 U0E sing 441 n n N3 HN31 U0E sing 442 n n N3 HN32 U0E sing 443 n n N4 HN4 U0E sing 444 n n N5 HN51 U0E sing 445 n n N5 HN52 U0E sing 446 n n N6 HN6 U0E sing 447 n n N7 HN7 U0E sing 448 n n N8 HN81 U0E sing 449 n n N8 HN82 U0E sing 450 n n O2 HO2 U0E sing 451 n n # _atom_sites.entry_id 1AXA _atom_sites.fract_transf_matrix[1][1] 0.015735 _atom_sites.fract_transf_matrix[1][2] 0.009084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U0E A 1 100 1 U0E U0E . D 2 U0E A 1 101 2 U0E U0E . E 3 HOH A 1 102 3 HOH HOH . E 3 HOH A 2 103 4 HOH HOH . E 3 HOH A 3 104 6 HOH HOH . E 3 HOH A 4 105 7 HOH HOH . E 3 HOH A 5 106 9 HOH HOH . E 3 HOH A 6 107 10 HOH HOH . E 3 HOH A 7 108 12 HOH HOH . E 3 HOH A 8 109 13 HOH HOH . E 3 HOH A 9 110 15 HOH HOH . E 3 HOH A 10 111 17 HOH HOH . E 3 HOH A 11 112 21 HOH HOH . E 3 HOH A 12 113 22 HOH HOH . E 3 HOH A 13 114 25 HOH HOH . E 3 HOH A 14 115 26 HOH HOH . E 3 HOH A 15 116 29 HOH HOH . E 3 HOH A 16 117 34 HOH HOH . E 3 HOH A 17 118 38 HOH HOH . E 3 HOH A 18 119 39 HOH HOH . E 3 HOH A 19 120 41 HOH HOH . E 3 HOH A 20 121 42 HOH HOH . E 3 HOH A 21 122 44 HOH HOH . E 3 HOH A 22 123 45 HOH HOH . E 3 HOH A 23 124 46 HOH HOH . E 3 HOH A 24 125 49 HOH HOH . E 3 HOH A 25 126 52 HOH HOH . E 3 HOH A 26 127 54 HOH HOH . E 3 HOH A 27 128 55 HOH HOH . E 3 HOH A 28 129 56 HOH HOH . E 3 HOH A 29 130 57 HOH HOH . E 3 HOH A 30 131 61 HOH HOH . E 3 HOH A 31 132 62 HOH HOH . F 3 HOH B 1 100 1 HOH HOH . F 3 HOH B 2 101 2 HOH HOH . F 3 HOH B 3 102 5 HOH HOH . F 3 HOH B 4 103 8 HOH HOH . F 3 HOH B 5 104 11 HOH HOH . F 3 HOH B 6 105 14 HOH HOH . F 3 HOH B 7 106 16 HOH HOH . F 3 HOH B 8 107 18 HOH HOH . F 3 HOH B 9 108 19 HOH HOH . F 3 HOH B 10 109 20 HOH HOH . F 3 HOH B 11 110 23 HOH HOH . F 3 HOH B 12 111 24 HOH HOH . F 3 HOH B 13 112 27 HOH HOH . F 3 HOH B 14 113 28 HOH HOH . F 3 HOH B 15 114 30 HOH HOH . F 3 HOH B 16 115 31 HOH HOH . F 3 HOH B 17 116 32 HOH HOH . F 3 HOH B 18 117 33 HOH HOH . F 3 HOH B 19 118 35 HOH HOH . F 3 HOH B 20 119 36 HOH HOH . F 3 HOH B 21 120 37 HOH HOH . F 3 HOH B 22 121 40 HOH HOH . F 3 HOH B 23 122 43 HOH HOH . F 3 HOH B 24 123 47 HOH HOH . F 3 HOH B 25 124 48 HOH HOH . F 3 HOH B 26 125 50 HOH HOH . F 3 HOH B 27 126 51 HOH HOH . F 3 HOH B 28 127 53 HOH HOH . F 3 HOH B 29 128 58 HOH HOH . F 3 HOH B 30 129 59 HOH HOH . F 3 HOH B 31 130 60 HOH HOH . F 3 HOH B 32 131 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U0E . A . C 2 -10.262 15.742 32.184 0.5 20.29 ? C1 U0E 100 A 1 HETATM 2 C C2 U0E . A . C 2 -10.007 15.54 30.701 0.5 19.93 ? C2 U0E 100 A 1 HETATM 3 C C3 U0E . A . C 2 -10.759 16.163 28.386 0.5 19.13 ? C3 U0E 100 A 1 HETATM 4 C C4 U0E . A . C 2 -12.166 15.947 27.831 0.5 20.24 ? C4 U0E 100 A 1 HETATM 5 C C5 U0E . A . C 2 -12.856 14.623 28.156 0.5 27.8 ? C5 U0E 100 A 1 HETATM 6 C C6 U0E . A . C 2 -13.735 14.694 29.422 0.5 29.6 ? C6 U0E 100 A 1 HETATM 7 C C7 U0E . A . C 2 -14.471 13.375 29.651 0.5 31.32 ? C7 U0E 100 A 1 HETATM 8 C C8 U0E . A . C 2 -13.42 12.268 29.773 0.5 32.25 ? C8 U0E 100 A 1 HETATM 9 C C9 U0E . A . C 2 -12.555 12.204 28.513 0.5 31.88 ? C9 U0E 100 A 1 HETATM 10 C C10 U0E . A . C 2 -11.836 13.506 28.281 0.5 30.04 ? C10 U0E 100 A 1 HETATM 11 C C11 U0E . A . C 2 -10.2 17.434 27.718 0.5 16.7 ? C11 U0E 100 A 1 HETATM 12 C C12 U0E . A . C 2 -8.714 17.705 28.026 0.5 16.59 ? C12 U0E 100 A 1 HETATM 13 C C13 U0E . A . C 2 -7.927 18.384 26.901 0.5 17.48 ? C13 U0E 100 A 1 HETATM 14 C C14 U0E . A . C 2 -6.592 18.915 27.516 0.5 21.4 ? C14 U0E 100 A 1 HETATM 15 C C15 U0E . A . C 2 -5.722 19.691 26.529 0.5 21.03 ? C15 U0E 100 A 1 HETATM 16 C C16 U0E . A . C 2 -5.72 17.913 28.295 0.5 21.38 ? C16 U0E 100 A 1 HETATM 17 C C17 U0E . A . C 2 -7.689 17.347 25.784 0.5 18.85 ? C17 U0E 100 A 1 HETATM 18 C C18 U0E . A . C 2 -7.414 17.13 23.344 0.5 24.69 ? C18 U0E 100 A 1 HETATM 19 C C19 U0E . A . C 2 -8.486 16.097 22.816 0.5 26.05 ? C19 U0E 100 A 1 HETATM 20 C C20 U0E . A . C 2 -9.462 16.274 21.616 0.5 31.57 ? C20 U0E 100 A 1 HETATM 21 C C21 U0E . A . C 2 -8.889 16.843 20.311 0.5 46.28 ? C21 U0E 100 A 1 HETATM 22 C C22 U0E . A . C 2 -6.552 18.043 22.445 0.5 28.34 ? C22 U0E 100 A 1 HETATM 23 C C23 U0E . A . C 2 -4.704 17.856 20.793 0.5 32.2 ? C23 U0E 100 A 1 HETATM 24 C C24 U0E . A . C 2 -4.595 16.712 19.75 0.5 32.01 ? C24 U0E 100 A 1 HETATM 25 C C25 U0E . A . C 2 -3.322 18.15 21.437 0.5 35.19 ? C25 U0E 100 A 1 HETATM 26 C C26 U0E . A . C 2 -3.187 19.447 22.267 0.5 54.79 ? C26 U0E 100 A 1 HETATM 27 C C27 U0E . A . C 2 -1.999 19.446 23.252 0.5 66.61 ? C27 U0E 100 A 1 HETATM 28 C C28 U0E . A . C 2 0.185 20.305 22.375 0.5 80 ? C28 U0E 100 A 1 HETATM 29 N N1 U0E . A . C 2 -10.814 16.248 29.863 0.5 18.66 ? N1 U0E 100 A 1 HETATM 30 N N2 U0E . A . C 2 -7.692 17.891 24.553 0.5 21.19 ? N2 U0E 100 A 1 HETATM 31 N N3 U0E . A . C 2 -8.183 15.974 19.569 0.5 46.65 ? N3 U0E 100 A 1 HETATM 32 N N4 U0E . A . C 2 -5.643 17.309 21.761 0.5 30.54 ? N4 U0E 100 A 1 HETATM 33 N N5 U0E . A . C 2 -4.305 17.113 18.503 0.5 32.52 ? N5 U0E 100 A 1 HETATM 34 N N6 U0E . A . C 2 -1.017 20.496 22.962 0.5 70.9 ? N6 U0E 100 A 1 HETATM 35 N N7 U0E . A . C 2 0.309 20.362 21.055 0.5 67.4 ? N7 U0E 100 A 1 HETATM 36 N N8 U0E . A . C 2 1.291 20.061 23.082 0.5 66.5 ? N8 U0E 100 A 1 HETATM 37 O O1 U0E . A . C 2 -9.13 14.775 30.347 0.5 21.03 ? O1 U0E 100 A 1 HETATM 38 O O2 U0E . A . C 2 -11.071 18.508 28.013 0.5 14.75 ? O2 U0E 100 A 1 HETATM 39 O O3 U0E . A . C 2 -7.535 16.159 26.046 0.5 18.12 ? O3 U0E 100 A 1 HETATM 40 O O4 U0E . A . C 2 -8.972 18.037 20.073 0.5 38.32 ? O4 U0E 100 A 1 HETATM 41 O O5 U0E . A . C 2 -6.792 19.238 22.272 0.5 30.6 ? O5 U0E 100 A 1 HETATM 42 O O6 U0E . A . C 2 -4.784 15.547 20.069 0.5 31.5 ? O6 U0E 100 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #