data_1AXS # _model_server_result.job_id lrFF-epvr-UmiPJ48tXY1Q _model_server_result.datetime_utc '2024-10-12 13:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1axs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":212}' # _entry.id 1AXS # _exptl.entry_id 1AXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.43 _cell.angle_gamma 90 _cell.entry_id 1AXS _cell.length_a 42.78 _cell.length_b 81.5 _cell.length_c 128.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,O,P 1 1 C,D,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 147 H CYS 140 1_555 B SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OE1 GLN 27 L GLN 27 1_555 F CD CD . L CD 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc2 A OE2 GLU 93 L GLU 93 1_555 F CD CD . L CD 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? metalc ? metalc3 A OE1 GLU 93 L GLU 93 1_555 F CD CD . L CD 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc4 A OE2 GLU 143 L GLU 143 1_555 G CD CD . L CD 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc5 A OE1 GLU 143 L GLU 143 1_555 G CD CD . L CD 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 A OD2 ASP 167 L ASP 167 1_555 E CD CD . L CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 A OD1 ASP 167 L ASP 167 1_555 E CD CD . L CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc8 F CD CD . L CD 213 1_555 O O HOH . L HOH 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc9 G CD CD . L CD 214 1_555 O O HOH . L HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc10 B OG SER 75 H SER 74 1_555 H CD CD . H CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc11 B OD2 ASP 215 H ASP 208 1_555 I CD CD . H CD 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc12 H CD CD . H CD 1004 1_555 P O HOH . H HOH 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc13 C OH TYR 49 A TYR 49 1_555 L CD CD . A CD 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc14 C OE2 GLU 143 A GLU 143 1_555 M CD CD . A CD 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc15 C OE1 GLU 143 A GLU 143 1_555 M CD CD . A CD 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc16 C O LEU 201 A LEU 201 1_555 K CD CD . A CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc17 L CD CD . A CD 213 1_555 D OE1 GLU 89 B GLU 85 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AXS _atom_sites.fract_transf_matrix[1][1] 0.023375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CD L 1 212 2 CD CD . F 3 CD L 1 213 42 CD CD . G 3 CD L 1 214 53 CD CD . H 3 CD H 1 1004 24 CD CD . I 3 CD H 1 1005 70 CD CD . J 4 HOP H 1 1006 1 HOP HOP . K 3 CD A 1 212 1 CD CD . L 3 CD A 1 213 3 CD CD . M 3 CD A 1 214 88 CD CD . N 4 HOP B 1 1004 1 HOP HOP . O 5 HOH L 1 215 4 HOH HOH . O 5 HOH L 2 216 6 HOH HOH . O 5 HOH L 3 217 7 HOH HOH . O 5 HOH L 4 218 9 HOH HOH . O 5 HOH L 5 219 17 HOH HOH . O 5 HOH L 6 220 19 HOH HOH . O 5 HOH L 7 221 20 HOH HOH . O 5 HOH L 8 222 22 HOH HOH . O 5 HOH L 9 223 26 HOH HOH . O 5 HOH L 10 224 43 HOH HOH . O 5 HOH L 11 225 44 HOH HOH . O 5 HOH L 12 226 45 HOH HOH . O 5 HOH L 13 227 50 HOH HOH . O 5 HOH L 14 228 54 HOH HOH . O 5 HOH L 15 229 55 HOH HOH . O 5 HOH L 16 230 56 HOH HOH . O 5 HOH L 17 231 58 HOH HOH . O 5 HOH L 18 232 61 HOH HOH . O 5 HOH L 19 233 66 HOH HOH . O 5 HOH L 20 234 67 HOH HOH . O 5 HOH L 21 235 72 HOH HOH . O 5 HOH L 22 236 74 HOH HOH . O 5 HOH L 23 237 80 HOH HOH . O 5 HOH L 24 238 82 HOH HOH . O 5 HOH L 25 239 85 HOH HOH . O 5 HOH L 26 240 89 HOH HOH . O 5 HOH L 27 241 93 HOH HOH . O 5 HOH L 28 242 95 HOH HOH . O 5 HOH L 29 243 102 HOH HOH . O 5 HOH L 30 244 109 HOH HOH . O 5 HOH L 31 245 111 HOH HOH . O 5 HOH L 32 246 112 HOH HOH . O 5 HOH L 33 247 117 HOH HOH . O 5 HOH L 34 248 120 HOH HOH . O 5 HOH L 35 249 122 HOH HOH . O 5 HOH L 36 250 123 HOH HOH . O 5 HOH L 37 251 124 HOH HOH . O 5 HOH L 38 252 125 HOH HOH . O 5 HOH L 39 253 129 HOH HOH . O 5 HOH L 40 254 131 HOH HOH . O 5 HOH L 41 255 132 HOH HOH . O 5 HOH L 42 256 133 HOH HOH . O 5 HOH L 43 257 135 HOH HOH . O 5 HOH L 44 258 139 HOH HOH . O 5 HOH L 45 259 146 HOH HOH . O 5 HOH L 46 260 147 HOH HOH . O 5 HOH L 47 261 150 HOH HOH . O 5 HOH L 48 262 160 HOH HOH . O 5 HOH L 49 263 164 HOH HOH . O 5 HOH L 50 264 170 HOH HOH . O 5 HOH L 51 265 171 HOH HOH . O 5 HOH L 52 266 175 HOH HOH . O 5 HOH L 53 267 186 HOH HOH . O 5 HOH L 54 268 187 HOH HOH . O 5 HOH L 55 269 190 HOH HOH . O 5 HOH L 56 270 193 HOH HOH . P 5 HOH H 1 1007 8 HOH HOH . P 5 HOH H 2 1008 11 HOH HOH . P 5 HOH H 3 1009 12 HOH HOH . P 5 HOH H 4 1010 15 HOH HOH . P 5 HOH H 5 1011 25 HOH HOH . P 5 HOH H 6 1012 30 HOH HOH . P 5 HOH H 7 1013 36 HOH HOH . P 5 HOH H 8 1014 39 HOH HOH . P 5 HOH H 9 1015 40 HOH HOH . P 5 HOH H 10 1016 46 HOH HOH . P 5 HOH H 11 1017 47 HOH HOH . P 5 HOH H 12 1018 52 HOH HOH . P 5 HOH H 13 1019 60 HOH HOH . P 5 HOH H 14 1020 69 HOH HOH . P 5 HOH H 15 1021 76 HOH HOH . P 5 HOH H 16 1022 77 HOH HOH . P 5 HOH H 17 1023 79 HOH HOH . P 5 HOH H 18 1024 81 HOH HOH . P 5 HOH H 19 1025 83 HOH HOH . P 5 HOH H 20 1026 90 HOH HOH . P 5 HOH H 21 1027 92 HOH HOH . P 5 HOH H 22 1028 98 HOH HOH . P 5 HOH H 23 1029 104 HOH HOH . P 5 HOH H 24 1030 107 HOH HOH . P 5 HOH H 25 1031 108 HOH HOH . P 5 HOH H 26 1032 115 HOH HOH . P 5 HOH H 27 1033 118 HOH HOH . P 5 HOH H 28 1034 121 HOH HOH . P 5 HOH H 29 1035 126 HOH HOH . P 5 HOH H 30 1036 128 HOH HOH . P 5 HOH H 31 1037 134 HOH HOH . P 5 HOH H 32 1038 138 HOH HOH . P 5 HOH H 33 1039 141 HOH HOH . P 5 HOH H 34 1040 143 HOH HOH . P 5 HOH H 35 1041 144 HOH HOH . P 5 HOH H 36 1042 148 HOH HOH . P 5 HOH H 37 1043 155 HOH HOH . P 5 HOH H 38 1044 157 HOH HOH . P 5 HOH H 39 1045 163 HOH HOH . P 5 HOH H 40 1046 166 HOH HOH . P 5 HOH H 41 1047 177 HOH HOH . P 5 HOH H 42 1048 179 HOH HOH . P 5 HOH H 43 1049 181 HOH HOH . P 5 HOH H 44 1050 182 HOH HOH . P 5 HOH H 45 1051 184 HOH HOH . Q 5 HOH A 1 215 5 HOH HOH . Q 5 HOH A 2 216 10 HOH HOH . Q 5 HOH A 3 217 21 HOH HOH . Q 5 HOH A 4 218 23 HOH HOH . Q 5 HOH A 5 219 27 HOH HOH . Q 5 HOH A 6 220 28 HOH HOH . Q 5 HOH A 7 221 29 HOH HOH . Q 5 HOH A 8 222 31 HOH HOH . Q 5 HOH A 9 223 32 HOH HOH . Q 5 HOH A 10 224 34 HOH HOH . Q 5 HOH A 11 225 35 HOH HOH . Q 5 HOH A 12 226 38 HOH HOH . Q 5 HOH A 13 227 41 HOH HOH . Q 5 HOH A 14 228 48 HOH HOH . Q 5 HOH A 15 229 49 HOH HOH . Q 5 HOH A 16 230 51 HOH HOH . Q 5 HOH A 17 231 59 HOH HOH . Q 5 HOH A 18 232 62 HOH HOH . Q 5 HOH A 19 233 68 HOH HOH . Q 5 HOH A 20 234 84 HOH HOH . Q 5 HOH A 21 235 99 HOH HOH . Q 5 HOH A 22 236 100 HOH HOH . Q 5 HOH A 23 237 101 HOH HOH . Q 5 HOH A 24 238 105 HOH HOH . Q 5 HOH A 25 239 106 HOH HOH . Q 5 HOH A 26 240 114 HOH HOH . Q 5 HOH A 27 241 116 HOH HOH . Q 5 HOH A 28 242 127 HOH HOH . Q 5 HOH A 29 243 136 HOH HOH . Q 5 HOH A 30 244 140 HOH HOH . Q 5 HOH A 31 245 142 HOH HOH . Q 5 HOH A 32 246 149 HOH HOH . Q 5 HOH A 33 247 153 HOH HOH . Q 5 HOH A 34 248 154 HOH HOH . Q 5 HOH A 35 249 159 HOH HOH . Q 5 HOH A 36 250 161 HOH HOH . Q 5 HOH A 37 251 162 HOH HOH . Q 5 HOH A 38 252 165 HOH HOH . Q 5 HOH A 39 253 168 HOH HOH . Q 5 HOH A 40 254 169 HOH HOH . Q 5 HOH A 41 255 172 HOH HOH . Q 5 HOH A 42 256 174 HOH HOH . Q 5 HOH A 43 257 180 HOH HOH . Q 5 HOH A 44 258 183 HOH HOH . Q 5 HOH A 45 259 189 HOH HOH . Q 5 HOH A 46 260 191 HOH HOH . Q 5 HOH A 47 261 192 HOH HOH . R 5 HOH B 1 1005 13 HOH HOH . R 5 HOH B 2 1006 14 HOH HOH . R 5 HOH B 3 1007 16 HOH HOH . R 5 HOH B 4 1008 18 HOH HOH . R 5 HOH B 5 1009 33 HOH HOH . R 5 HOH B 6 1010 37 HOH HOH . R 5 HOH B 7 1011 57 HOH HOH . R 5 HOH B 8 1012 63 HOH HOH . R 5 HOH B 9 1013 64 HOH HOH . R 5 HOH B 10 1014 65 HOH HOH . R 5 HOH B 11 1015 71 HOH HOH . R 5 HOH B 12 1016 73 HOH HOH . R 5 HOH B 13 1017 75 HOH HOH . R 5 HOH B 14 1018 78 HOH HOH . R 5 HOH B 15 1019 86 HOH HOH . R 5 HOH B 16 1020 87 HOH HOH . R 5 HOH B 17 1021 91 HOH HOH . R 5 HOH B 18 1022 94 HOH HOH . R 5 HOH B 19 1023 96 HOH HOH . R 5 HOH B 20 1024 97 HOH HOH . R 5 HOH B 21 1025 103 HOH HOH . R 5 HOH B 22 1026 110 HOH HOH . R 5 HOH B 23 1027 113 HOH HOH . R 5 HOH B 24 1028 119 HOH HOH . R 5 HOH B 25 1029 130 HOH HOH . R 5 HOH B 26 1030 137 HOH HOH . R 5 HOH B 27 1031 145 HOH HOH . R 5 HOH B 28 1032 151 HOH HOH . R 5 HOH B 29 1033 152 HOH HOH . R 5 HOH B 30 1034 156 HOH HOH . R 5 HOH B 31 1035 158 HOH HOH . R 5 HOH B 32 1036 167 HOH HOH . R 5 HOH B 33 1037 173 HOH HOH . R 5 HOH B 34 1038 176 HOH HOH . R 5 HOH B 35 1039 178 HOH HOH . R 5 HOH B 36 1040 185 HOH HOH . R 5 HOH B 37 1041 188 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.467 _atom_site.Cartn_y 18.396 _atom_site.Cartn_z 77.649 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 39.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 212 _atom_site.auth_asym_id L _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #