data_1AXW
#
_model_server_result.job_id            QRQe0f4Cg5yLnDmDWMAjPA 
_model_server_result.datetime_utc      '2024-12-07 04:43:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1axw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    1AXW 
#
_exptl.entry_id    1AXW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1AXW 
_cell.length_a            127.34 
_cell.length_b            127.34 
_cell.length_c            68.06 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AXW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A O2 FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
covale ? covale3 B C FMT 1 B FMT 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B O1 FMT 1 B FMT 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
#
_chem_comp.formula           'C9 H13 N2 O8 P' 
_chem_comp.formula_weight    308.182 
_chem_comp.id                UMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DUMP 
#
_atom_sites.entry_id                     1AXW 
_atom_sites.fract_transf_matrix[1][1]    0.007853 
_atom_sites.fract_transf_matrix[1][2]    0.004534 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 603 603 UMP UMP . 
D 3 MTX A 1 732 732 MTX MTX . 
E 2 UMP B 1 604 604 UMP UMP . 
F 3 MTX B 1 733 733 MTX MTX . 
G 4 HOH A 1 733 1 HOH HOH . 
G 4 HOH A 2 734 2 HOH HOH . 
G 4 HOH A 3 735 3 HOH HOH . 
G 4 HOH A 4 736 4 HOH HOH . 
G 4 HOH A 5 737 6 HOH HOH . 
G 4 HOH A 6 738 9 HOH HOH . 
G 4 HOH A 7 739 11 HOH HOH . 
G 4 HOH A 8 740 13 HOH HOH . 
G 4 HOH A 9 741 14 HOH HOH . 
G 4 HOH A 10 742 15 HOH HOH . 
G 4 HOH A 11 743 20 HOH HOH . 
G 4 HOH A 12 744 21 HOH HOH . 
G 4 HOH A 13 745 24 HOH HOH . 
G 4 HOH A 14 746 25 HOH HOH . 
G 4 HOH A 15 747 27 HOH HOH . 
G 4 HOH A 16 748 28 HOH HOH . 
G 4 HOH A 17 749 29 HOH HOH . 
G 4 HOH A 18 750 31 HOH HOH . 
G 4 HOH A 19 751 32 HOH HOH . 
G 4 HOH A 20 752 33 HOH HOH . 
G 4 HOH A 21 753 34 HOH HOH . 
G 4 HOH A 22 754 36 HOH HOH . 
G 4 HOH A 23 755 37 HOH HOH . 
G 4 HOH A 24 756 38 HOH HOH . 
G 4 HOH A 25 757 39 HOH HOH . 
G 4 HOH A 26 758 40 HOH HOH . 
G 4 HOH A 27 759 41 HOH HOH . 
G 4 HOH A 28 760 42 HOH HOH . 
G 4 HOH A 29 761 43 HOH HOH . 
G 4 HOH A 30 762 44 HOH HOH . 
G 4 HOH A 31 763 46 HOH HOH . 
G 4 HOH A 32 764 47 HOH HOH . 
G 4 HOH A 33 765 48 HOH HOH . 
G 4 HOH A 34 766 49 HOH HOH . 
G 4 HOH A 35 767 50 HOH HOH . 
G 4 HOH A 36 768 51 HOH HOH . 
G 4 HOH A 37 769 53 HOH HOH . 
G 4 HOH A 38 770 54 HOH HOH . 
G 4 HOH A 39 771 55 HOH HOH . 
G 4 HOH A 40 772 57 HOH HOH . 
G 4 HOH A 41 773 58 HOH HOH . 
G 4 HOH A 42 774 59 HOH HOH . 
G 4 HOH A 43 775 60 HOH HOH . 
G 4 HOH A 44 776 66 HOH HOH . 
G 4 HOH A 45 777 70 HOH HOH . 
G 4 HOH A 46 778 71 HOH HOH . 
G 4 HOH A 47 779 72 HOH HOH . 
G 4 HOH A 48 780 74 HOH HOH . 
G 4 HOH A 49 781 78 HOH HOH . 
G 4 HOH A 50 782 79 HOH HOH . 
G 4 HOH A 51 783 84 HOH HOH . 
G 4 HOH A 52 784 86 HOH HOH . 
G 4 HOH A 53 785 89 HOH HOH . 
G 4 HOH A 54 786 90 HOH HOH . 
G 4 HOH A 55 787 92 HOH HOH . 
G 4 HOH A 56 788 96 HOH HOH . 
G 4 HOH A 57 789 98 HOH HOH . 
G 4 HOH A 58 790 101 HOH HOH . 
G 4 HOH A 59 791 102 HOH HOH . 
G 4 HOH A 60 792 106 HOH HOH . 
G 4 HOH A 61 793 107 HOH HOH . 
G 4 HOH A 62 794 108 HOH HOH . 
G 4 HOH A 63 795 109 HOH HOH . 
G 4 HOH A 64 796 110 HOH HOH . 
G 4 HOH A 65 797 111 HOH HOH . 
G 4 HOH A 66 798 112 HOH HOH . 
G 4 HOH A 67 799 113 HOH HOH . 
G 4 HOH A 68 800 114 HOH HOH . 
G 4 HOH A 69 801 115 HOH HOH . 
G 4 HOH A 70 802 116 HOH HOH . 
G 4 HOH A 71 803 117 HOH HOH . 
G 4 HOH A 72 804 118 HOH HOH . 
G 4 HOH A 73 805 119 HOH HOH . 
G 4 HOH A 74 806 120 HOH HOH . 
G 4 HOH A 75 807 121 HOH HOH . 
G 4 HOH A 76 808 132 HOH HOH . 
G 4 HOH A 77 809 134 HOH HOH . 
G 4 HOH A 78 810 135 HOH HOH . 
G 4 HOH A 79 811 136 HOH HOH . 
G 4 HOH A 80 812 144 HOH HOH . 
G 4 HOH A 81 813 148 HOH HOH . 
G 4 HOH A 82 814 151 HOH HOH . 
G 4 HOH A 83 815 152 HOH HOH . 
G 4 HOH A 84 816 156 HOH HOH . 
G 4 HOH A 85 817 159 HOH HOH . 
G 4 HOH A 86 818 160 HOH HOH . 
G 4 HOH A 87 819 161 HOH HOH . 
G 4 HOH A 88 820 165 HOH HOH . 
G 4 HOH A 89 821 167 HOH HOH . 
G 4 HOH A 90 822 170 HOH HOH . 
G 4 HOH A 91 823 172 HOH HOH . 
G 4 HOH A 92 824 173 HOH HOH . 
G 4 HOH A 93 825 174 HOH HOH . 
G 4 HOH A 94 826 175 HOH HOH . 
G 4 HOH A 95 827 176 HOH HOH . 
G 4 HOH A 96 828 177 HOH HOH . 
G 4 HOH A 97 829 179 HOH HOH . 
G 4 HOH A 98 830 180 HOH HOH . 
G 4 HOH A 99 831 181 HOH HOH . 
G 4 HOH A 100 832 182 HOH HOH . 
G 4 HOH A 101 833 183 HOH HOH . 
G 4 HOH A 102 834 184 HOH HOH . 
G 4 HOH A 103 835 185 HOH HOH . 
G 4 HOH A 104 836 186 HOH HOH . 
G 4 HOH A 105 837 187 HOH HOH . 
G 4 HOH A 106 838 188 HOH HOH . 
G 4 HOH A 107 839 189 HOH HOH . 
G 4 HOH A 108 840 190 HOH HOH . 
G 4 HOH A 109 841 191 HOH HOH . 
G 4 HOH A 110 842 192 HOH HOH . 
G 4 HOH A 111 843 193 HOH HOH . 
G 4 HOH A 112 844 194 HOH HOH . 
G 4 HOH A 113 845 195 HOH HOH . 
G 4 HOH A 114 846 196 HOH HOH . 
G 4 HOH A 115 847 197 HOH HOH . 
G 4 HOH A 116 848 198 HOH HOH . 
G 4 HOH A 117 849 199 HOH HOH . 
G 4 HOH A 118 850 200 HOH HOH . 
G 4 HOH A 119 851 201 HOH HOH . 
G 4 HOH A 120 852 202 HOH HOH . 
G 4 HOH A 121 853 203 HOH HOH . 
G 4 HOH A 122 854 204 HOH HOH . 
G 4 HOH A 123 855 205 HOH HOH . 
G 4 HOH A 124 856 206 HOH HOH . 
H 4 HOH B 1 734 5 HOH HOH . 
H 4 HOH B 2 735 7 HOH HOH . 
H 4 HOH B 3 736 8 HOH HOH . 
H 4 HOH B 4 737 10 HOH HOH . 
H 4 HOH B 5 738 17 HOH HOH . 
H 4 HOH B 6 739 19 HOH HOH . 
H 4 HOH B 7 740 23 HOH HOH . 
H 4 HOH B 8 741 26 HOH HOH . 
H 4 HOH B 9 742 30 HOH HOH . 
H 4 HOH B 10 743 35 HOH HOH . 
H 4 HOH B 11 744 45 HOH HOH . 
H 4 HOH B 12 745 56 HOH HOH . 
H 4 HOH B 13 746 61 HOH HOH . 
H 4 HOH B 14 747 62 HOH HOH . 
H 4 HOH B 15 748 63 HOH HOH . 
H 4 HOH B 16 749 65 HOH HOH . 
H 4 HOH B 17 750 67 HOH HOH . 
H 4 HOH B 18 751 68 HOH HOH . 
H 4 HOH B 19 752 73 HOH HOH . 
H 4 HOH B 20 753 75 HOH HOH . 
H 4 HOH B 21 754 76 HOH HOH . 
H 4 HOH B 22 755 77 HOH HOH . 
H 4 HOH B 23 756 80 HOH HOH . 
H 4 HOH B 24 757 82 HOH HOH . 
H 4 HOH B 25 758 88 HOH HOH . 
H 4 HOH B 26 759 91 HOH HOH . 
H 4 HOH B 27 760 93 HOH HOH . 
H 4 HOH B 28 761 94 HOH HOH . 
H 4 HOH B 29 762 95 HOH HOH . 
H 4 HOH B 30 763 97 HOH HOH . 
H 4 HOH B 31 764 99 HOH HOH . 
H 4 HOH B 32 765 100 HOH HOH . 
H 4 HOH B 33 766 103 HOH HOH . 
H 4 HOH B 34 767 104 HOH HOH . 
H 4 HOH B 35 768 105 HOH HOH . 
H 4 HOH B 36 769 124 HOH HOH . 
H 4 HOH B 37 770 125 HOH HOH . 
H 4 HOH B 38 771 127 HOH HOH . 
H 4 HOH B 39 772 128 HOH HOH . 
H 4 HOH B 40 773 129 HOH HOH . 
H 4 HOH B 41 774 130 HOH HOH . 
H 4 HOH B 42 775 131 HOH HOH . 
H 4 HOH B 43 776 133 HOH HOH . 
H 4 HOH B 44 777 137 HOH HOH . 
H 4 HOH B 45 778 138 HOH HOH . 
H 4 HOH B 46 779 139 HOH HOH . 
H 4 HOH B 47 780 140 HOH HOH . 
H 4 HOH B 48 781 141 HOH HOH . 
H 4 HOH B 49 782 142 HOH HOH . 
H 4 HOH B 50 783 143 HOH HOH . 
H 4 HOH B 51 784 145 HOH HOH . 
H 4 HOH B 52 785 149 HOH HOH . 
H 4 HOH B 53 786 153 HOH HOH . 
H 4 HOH B 54 787 154 HOH HOH . 
H 4 HOH B 55 788 155 HOH HOH . 
H 4 HOH B 56 789 157 HOH HOH . 
H 4 HOH B 57 790 158 HOH HOH . 
H 4 HOH B 58 791 162 HOH HOH . 
H 4 HOH B 59 792 163 HOH HOH . 
H 4 HOH B 60 793 164 HOH HOH . 
H 4 HOH B 61 794 166 HOH HOH . 
H 4 HOH B 62 795 168 HOH HOH . 
H 4 HOH B 63 796 169 HOH HOH . 
H 4 HOH B 64 797 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UMP . . . E 2 44.28 34.491 24.636 1 40.84 ? N1 UMP 604 B 1 
HETATM 2 C C2 UMP . . . E 2 43.411 35.266 25.41 1 38.2 ? C2 UMP 604 B 1 
HETATM 3 N N3 UMP . . . E 2 42.376 35.856 24.673 1 43.45 ? N3 UMP 604 B 1 
HETATM 4 C C4 UMP . . . E 2 42.165 35.714 23.283 1 44.68 ? C4 UMP 604 B 1 
HETATM 5 C C5 UMP . . . E 2 43.122 34.884 22.581 1 43.98 ? C5 UMP 604 B 1 
HETATM 6 C C6 UMP . . . E 2 44.159 34.306 23.316 1 42.26 ? C6 UMP 604 B 1 
HETATM 7 O O2 UMP . . . E 2 43.525 35.396 26.625 1 34.63 ? O2 UMP 604 B 1 
HETATM 8 O O4 UMP . . . E 2 41.236 36.249 22.686 1 48.63 ? O4 UMP 604 B 1 
HETATM 9 C C1' UMP . . . E 2 45.43 33.795 25.245 1 40.3 ? C1' UMP 604 B 1 
HETATM 10 C C2' UMP . . . E 2 45.14 32.598 26.151 1 39.54 ? C2' UMP 604 B 1 
HETATM 11 C C3' UMP . . . E 2 46.501 31.924 26.237 1 38.77 ? C3' UMP 604 B 1 
HETATM 12 C C4' UMP . . . E 2 47.066 31.92 24.806 1 41.94 ? C4' UMP 604 B 1 
HETATM 13 O O3' UMP . . . E 2 47.327 32.783 27.04 1 33.91 ? O3' UMP 604 B 1 
HETATM 14 O O4' UMP . . . E 2 46.487 33.225 24.319 1 42.06 ? O4' UMP 604 B 1 
HETATM 15 C C5' UMP . . . E 2 46.495 30.757 23.986 1 40.96 ? C5' UMP 604 B 1 
HETATM 16 O O5' UMP . . . E 2 47.14 29.538 24.466 1 36.01 ? O5' UMP 604 B 1 
HETATM 17 P P UMP . . . E 2 46.455 28.125 24.673 1 30.34 ? P UMP 604 B 1 
HETATM 18 O OP1 UMP . . . E 2 47.525 27.18 25.065 1 33.42 ? OP1 UMP 604 B 1 
HETATM 19 O OP2 UMP . . . E 2 45.494 28.216 25.764 1 28.94 ? OP2 UMP 604 B 1 
HETATM 20 O OP3 UMP . . . E 2 45.779 27.629 23.457 1 27.21 ? OP3 UMP 604 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#