data_1AXW # _model_server_result.job_id grL-XTjl4897jM6-vZtLeA _model_server_result.datetime_utc '2024-12-07 05:07:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1axw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":732}' # _entry.id 1AXW # _exptl.entry_id 1AXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1AXW _cell.length_a 127.34 _cell.length_b 127.34 _cell.length_c 68.06 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A O2 FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? covale ? covale3 B C FMT 1 B FMT 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B O1 FMT 1 B FMT 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AXW _atom_sites.fract_transf_matrix[1][1] 0.007853 _atom_sites.fract_transf_matrix[1][2] 0.004534 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 603 603 UMP UMP . D 3 MTX A 1 732 732 MTX MTX . E 2 UMP B 1 604 604 UMP UMP . F 3 MTX B 1 733 733 MTX MTX . G 4 HOH A 1 733 1 HOH HOH . G 4 HOH A 2 734 2 HOH HOH . G 4 HOH A 3 735 3 HOH HOH . G 4 HOH A 4 736 4 HOH HOH . G 4 HOH A 5 737 6 HOH HOH . G 4 HOH A 6 738 9 HOH HOH . G 4 HOH A 7 739 11 HOH HOH . G 4 HOH A 8 740 13 HOH HOH . G 4 HOH A 9 741 14 HOH HOH . G 4 HOH A 10 742 15 HOH HOH . G 4 HOH A 11 743 20 HOH HOH . G 4 HOH A 12 744 21 HOH HOH . G 4 HOH A 13 745 24 HOH HOH . G 4 HOH A 14 746 25 HOH HOH . G 4 HOH A 15 747 27 HOH HOH . G 4 HOH A 16 748 28 HOH HOH . G 4 HOH A 17 749 29 HOH HOH . G 4 HOH A 18 750 31 HOH HOH . G 4 HOH A 19 751 32 HOH HOH . G 4 HOH A 20 752 33 HOH HOH . G 4 HOH A 21 753 34 HOH HOH . G 4 HOH A 22 754 36 HOH HOH . G 4 HOH A 23 755 37 HOH HOH . G 4 HOH A 24 756 38 HOH HOH . G 4 HOH A 25 757 39 HOH HOH . G 4 HOH A 26 758 40 HOH HOH . G 4 HOH A 27 759 41 HOH HOH . G 4 HOH A 28 760 42 HOH HOH . G 4 HOH A 29 761 43 HOH HOH . G 4 HOH A 30 762 44 HOH HOH . G 4 HOH A 31 763 46 HOH HOH . G 4 HOH A 32 764 47 HOH HOH . G 4 HOH A 33 765 48 HOH HOH . G 4 HOH A 34 766 49 HOH HOH . G 4 HOH A 35 767 50 HOH HOH . G 4 HOH A 36 768 51 HOH HOH . G 4 HOH A 37 769 53 HOH HOH . G 4 HOH A 38 770 54 HOH HOH . G 4 HOH A 39 771 55 HOH HOH . G 4 HOH A 40 772 57 HOH HOH . G 4 HOH A 41 773 58 HOH HOH . G 4 HOH A 42 774 59 HOH HOH . G 4 HOH A 43 775 60 HOH HOH . G 4 HOH A 44 776 66 HOH HOH . G 4 HOH A 45 777 70 HOH HOH . G 4 HOH A 46 778 71 HOH HOH . G 4 HOH A 47 779 72 HOH HOH . G 4 HOH A 48 780 74 HOH HOH . G 4 HOH A 49 781 78 HOH HOH . G 4 HOH A 50 782 79 HOH HOH . G 4 HOH A 51 783 84 HOH HOH . G 4 HOH A 52 784 86 HOH HOH . G 4 HOH A 53 785 89 HOH HOH . G 4 HOH A 54 786 90 HOH HOH . G 4 HOH A 55 787 92 HOH HOH . G 4 HOH A 56 788 96 HOH HOH . G 4 HOH A 57 789 98 HOH HOH . G 4 HOH A 58 790 101 HOH HOH . G 4 HOH A 59 791 102 HOH HOH . G 4 HOH A 60 792 106 HOH HOH . G 4 HOH A 61 793 107 HOH HOH . G 4 HOH A 62 794 108 HOH HOH . G 4 HOH A 63 795 109 HOH HOH . G 4 HOH A 64 796 110 HOH HOH . G 4 HOH A 65 797 111 HOH HOH . G 4 HOH A 66 798 112 HOH HOH . G 4 HOH A 67 799 113 HOH HOH . G 4 HOH A 68 800 114 HOH HOH . G 4 HOH A 69 801 115 HOH HOH . G 4 HOH A 70 802 116 HOH HOH . G 4 HOH A 71 803 117 HOH HOH . G 4 HOH A 72 804 118 HOH HOH . G 4 HOH A 73 805 119 HOH HOH . G 4 HOH A 74 806 120 HOH HOH . G 4 HOH A 75 807 121 HOH HOH . G 4 HOH A 76 808 132 HOH HOH . G 4 HOH A 77 809 134 HOH HOH . G 4 HOH A 78 810 135 HOH HOH . G 4 HOH A 79 811 136 HOH HOH . G 4 HOH A 80 812 144 HOH HOH . G 4 HOH A 81 813 148 HOH HOH . G 4 HOH A 82 814 151 HOH HOH . G 4 HOH A 83 815 152 HOH HOH . G 4 HOH A 84 816 156 HOH HOH . G 4 HOH A 85 817 159 HOH HOH . G 4 HOH A 86 818 160 HOH HOH . G 4 HOH A 87 819 161 HOH HOH . G 4 HOH A 88 820 165 HOH HOH . G 4 HOH A 89 821 167 HOH HOH . G 4 HOH A 90 822 170 HOH HOH . G 4 HOH A 91 823 172 HOH HOH . G 4 HOH A 92 824 173 HOH HOH . G 4 HOH A 93 825 174 HOH HOH . G 4 HOH A 94 826 175 HOH HOH . G 4 HOH A 95 827 176 HOH HOH . G 4 HOH A 96 828 177 HOH HOH . G 4 HOH A 97 829 179 HOH HOH . G 4 HOH A 98 830 180 HOH HOH . G 4 HOH A 99 831 181 HOH HOH . G 4 HOH A 100 832 182 HOH HOH . G 4 HOH A 101 833 183 HOH HOH . G 4 HOH A 102 834 184 HOH HOH . G 4 HOH A 103 835 185 HOH HOH . G 4 HOH A 104 836 186 HOH HOH . G 4 HOH A 105 837 187 HOH HOH . G 4 HOH A 106 838 188 HOH HOH . G 4 HOH A 107 839 189 HOH HOH . G 4 HOH A 108 840 190 HOH HOH . G 4 HOH A 109 841 191 HOH HOH . G 4 HOH A 110 842 192 HOH HOH . G 4 HOH A 111 843 193 HOH HOH . G 4 HOH A 112 844 194 HOH HOH . G 4 HOH A 113 845 195 HOH HOH . G 4 HOH A 114 846 196 HOH HOH . G 4 HOH A 115 847 197 HOH HOH . G 4 HOH A 116 848 198 HOH HOH . G 4 HOH A 117 849 199 HOH HOH . G 4 HOH A 118 850 200 HOH HOH . G 4 HOH A 119 851 201 HOH HOH . G 4 HOH A 120 852 202 HOH HOH . G 4 HOH A 121 853 203 HOH HOH . G 4 HOH A 122 854 204 HOH HOH . G 4 HOH A 123 855 205 HOH HOH . G 4 HOH A 124 856 206 HOH HOH . H 4 HOH B 1 734 5 HOH HOH . H 4 HOH B 2 735 7 HOH HOH . H 4 HOH B 3 736 8 HOH HOH . H 4 HOH B 4 737 10 HOH HOH . H 4 HOH B 5 738 17 HOH HOH . H 4 HOH B 6 739 19 HOH HOH . H 4 HOH B 7 740 23 HOH HOH . H 4 HOH B 8 741 26 HOH HOH . H 4 HOH B 9 742 30 HOH HOH . H 4 HOH B 10 743 35 HOH HOH . H 4 HOH B 11 744 45 HOH HOH . H 4 HOH B 12 745 56 HOH HOH . H 4 HOH B 13 746 61 HOH HOH . H 4 HOH B 14 747 62 HOH HOH . H 4 HOH B 15 748 63 HOH HOH . H 4 HOH B 16 749 65 HOH HOH . H 4 HOH B 17 750 67 HOH HOH . H 4 HOH B 18 751 68 HOH HOH . H 4 HOH B 19 752 73 HOH HOH . H 4 HOH B 20 753 75 HOH HOH . H 4 HOH B 21 754 76 HOH HOH . H 4 HOH B 22 755 77 HOH HOH . H 4 HOH B 23 756 80 HOH HOH . H 4 HOH B 24 757 82 HOH HOH . H 4 HOH B 25 758 88 HOH HOH . H 4 HOH B 26 759 91 HOH HOH . H 4 HOH B 27 760 93 HOH HOH . H 4 HOH B 28 761 94 HOH HOH . H 4 HOH B 29 762 95 HOH HOH . H 4 HOH B 30 763 97 HOH HOH . H 4 HOH B 31 764 99 HOH HOH . H 4 HOH B 32 765 100 HOH HOH . H 4 HOH B 33 766 103 HOH HOH . H 4 HOH B 34 767 104 HOH HOH . H 4 HOH B 35 768 105 HOH HOH . H 4 HOH B 36 769 124 HOH HOH . H 4 HOH B 37 770 125 HOH HOH . H 4 HOH B 38 771 127 HOH HOH . H 4 HOH B 39 772 128 HOH HOH . H 4 HOH B 40 773 129 HOH HOH . H 4 HOH B 41 774 130 HOH HOH . H 4 HOH B 42 775 131 HOH HOH . H 4 HOH B 43 776 133 HOH HOH . H 4 HOH B 44 777 137 HOH HOH . H 4 HOH B 45 778 138 HOH HOH . H 4 HOH B 46 779 139 HOH HOH . H 4 HOH B 47 780 140 HOH HOH . H 4 HOH B 48 781 141 HOH HOH . H 4 HOH B 49 782 142 HOH HOH . H 4 HOH B 50 783 143 HOH HOH . H 4 HOH B 51 784 145 HOH HOH . H 4 HOH B 52 785 149 HOH HOH . H 4 HOH B 53 786 153 HOH HOH . H 4 HOH B 54 787 154 HOH HOH . H 4 HOH B 55 788 155 HOH HOH . H 4 HOH B 56 789 157 HOH HOH . H 4 HOH B 57 790 158 HOH HOH . H 4 HOH B 58 791 162 HOH HOH . H 4 HOH B 59 792 163 HOH HOH . H 4 HOH B 60 793 164 HOH HOH . H 4 HOH B 61 794 166 HOH HOH . H 4 HOH B 62 795 168 HOH HOH . H 4 HOH B 63 796 169 HOH HOH . H 4 HOH B 64 797 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . D 3 13.051 18.578 30.609 1 47.6 ? N1 MTX 732 A 1 HETATM 2 C C2 MTX . . . D 3 12.719 19.297 31.716 1 46.67 ? C2 MTX 732 A 1 HETATM 3 N NA2 MTX . . . D 3 11.928 20.36 31.608 1 43 ? NA2 MTX 732 A 1 HETATM 4 N N3 MTX . . . D 3 13.366 19.085 32.899 1 46.78 ? N3 MTX 732 A 1 HETATM 5 C C4 MTX . . . D 3 14.348 18.161 33.024 1 48.37 ? C4 MTX 732 A 1 HETATM 6 N NA4 MTX . . . D 3 15.009 18.01 34.175 1 49.4 ? NA4 MTX 732 A 1 HETATM 7 C C4A MTX . . . D 3 14.722 17.415 31.899 1 50.04 ? C4A MTX 732 A 1 HETATM 8 N N5 MTX . . . D 3 15.805 16.636 31.945 1 50.78 ? N5 MTX 732 A 1 HETATM 9 C C6 MTX . . . D 3 15.983 15.694 30.987 1 50.85 ? C6 MTX 732 A 1 HETATM 10 C C7 MTX . . . D 3 15.543 16.014 29.594 1 52.91 ? C7 MTX 732 A 1 HETATM 11 N N8 MTX . . . D 3 14.409 17 29.532 1 51.68 ? N8 MTX 732 A 1 HETATM 12 C C8A MTX . . . D 3 14.056 17.684 30.656 1 50.22 ? C8A MTX 732 A 1 HETATM 13 C C9 MTX . . . D 3 16.528 14.351 31.306 1 47.9 ? C9 MTX 732 A 1 HETATM 14 N N10 MTX . . . D 3 16.819 14.173 32.752 1 45.67 ? N10 MTX 732 A 1 HETATM 15 C CM MTX . . . D 3 18.288 14.368 33.02 1 46.22 ? CM MTX 732 A 1 HETATM 16 C C11 MTX . . . D 3 13.953 13.568 35.811 1 49.3 ? C11 MTX 732 A 1 HETATM 17 C C12 MTX . . . D 3 15.308 13.864 36.126 1 43.82 ? C12 MTX 732 A 1 HETATM 18 C C13 MTX . . . D 3 16.242 14.08 35.106 1 43.79 ? C13 MTX 732 A 1 HETATM 19 C C14 MTX . . . D 3 15.862 14.008 33.741 1 44.96 ? C14 MTX 732 A 1 HETATM 20 C C15 MTX . . . D 3 14.489 13.741 33.432 1 45.94 ? C15 MTX 732 A 1 HETATM 21 C C16 MTX . . . D 3 13.539 13.522 34.45 1 45.74 ? C16 MTX 732 A 1 HETATM 22 C C MTX . . . D 3 13.011 13.265 36.91 1 54.43 ? C MTX 732 A 1 HETATM 23 O O MTX . . . D 3 11.806 13.048 36.743 1 50.02 ? O MTX 732 A 1 HETATM 24 N N MTX . . . D 3 13.542 13.22 38.148 1 65.58 ? N MTX 732 A 1 HETATM 25 C CA MTX . . . D 3 12.934 12.859 39.464 1 77.84 ? CA MTX 732 A 1 HETATM 26 C CT MTX . . . D 3 13.875 13.125 40.646 1 81.99 ? CT MTX 732 A 1 HETATM 27 O O1 MTX . . . D 3 15.046 12.684 40.601 1 86.91 ? O1 MTX 732 A 1 HETATM 28 O O2 MTX . . . D 3 13.433 13.799 41.601 1 86.36 ? O2 MTX 732 A 1 HETATM 29 C CB MTX . . . D 3 12.474 11.388 39.452 1 82.68 ? CB MTX 732 A 1 HETATM 30 C CG MTX . . . D 3 13.551 10.377 39.033 1 87.1 ? CG MTX 732 A 1 HETATM 31 C CD MTX . . . D 3 12.982 9.038 38.578 1 88.58 ? CD MTX 732 A 1 HETATM 32 O OE1 MTX . . . D 3 13.338 7.995 39.177 1 89.51 ? OE1 MTX 732 A 1 HETATM 33 O OE2 MTX . . . D 3 12.208 9.017 37.594 1 89.14 ? OE2 MTX 732 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 33 #