data_1AXZ # _model_server_result.job_id QzFqGwe5e3Epc0IZOywbDw _model_server_result.datetime_utc '2025-02-16 17:58:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1axz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1AXZ # _exptl.entry_id 1AXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.44 _cell.angle_gamma 90 _cell.entry_id 1AXZ _cell.length_a 84.202 _cell.length_b 72.99 _cell.length_c 71.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -28.358343 0 65.406945 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 XYP BMA C1 O1 . O2 HO2 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 2 7 1 FUC NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 301 NAG 2 n B NAG 2 B 2 NAG A 303 NAG 2 n B BMA 3 B 3 BMA A 304 BMA 2 n B XYP 4 B 4 XYP A 305 XYP 2 n B MAN 5 B 5 MAN A 306 MAN 2 n B MAN 6 B 6 MAN A 307 MAN 2 n B FUC 7 B 7 FUC A 302 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale3 B O3 NAG . B NAG 1 1_555 B C1 FUC . B FUC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale5 B O2 BMA . B BMA 3 1_555 B C1 XYP . B XYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? metalc ? metalc1 A OE2 GLU 127 A GLU 127 1_555 E MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 A OD2 ASP 129 A ASP 129 1_555 E MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A OD2 ASP 129 A ASP 129 1_555 F CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 A OD1 ASP 129 A ASP 129 1_555 F CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc5 A O PHE 131 A PHE 131 1_555 F CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 A OD1 ASN 133 A ASN 133 1_555 F CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc7 A OD1 ASP 136 A ASP 136 1_555 E MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 A OD2 ASP 136 A ASP 136 1_555 F CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc9 A NE2 HIS 142 A HIS 142 1_555 E MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc10 E MN MN . A MN 289 1_555 G O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc11 E MN MN . A MN 289 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc12 F CA CA . A CA 290 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc13 F CA CA . A CA 290 1_555 G O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLA _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'alpha-D-galactose;D-galactose;galactose;ALPHA D-GALACTOSE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLA sing 141 n n C1 O1 GLA sing 142 n n C1 O5 GLA sing 143 n n C1 H1 GLA sing 144 n n C2 C3 GLA sing 145 n n C2 O2 GLA sing 146 n n C2 H2 GLA sing 147 n n C3 C4 GLA sing 148 n n C3 O3 GLA sing 149 n n C3 H3 GLA sing 150 n n C4 C5 GLA sing 151 n n C4 O4 GLA sing 152 n n C4 H4 GLA sing 153 n n C5 C6 GLA sing 154 n n C5 O5 GLA sing 155 n n C5 H5 GLA sing 156 n n C6 O6 GLA sing 157 n n C6 H61 GLA sing 158 n n C6 H62 GLA sing 159 n n O1 HO1 GLA sing 160 n n O2 HO2 GLA sing 161 n n O3 HO3 GLA sing 162 n n O4 HO4 GLA sing 163 n n O6 HO6 GLA sing 164 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLA DGalpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLA a-D-galactopyranose 'COMMON NAME' GMML 1 GLA a-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLA Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1AXZ _atom_sites.fract_transf_matrix[1][1] 0.011876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005149 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLA A 1 401 401 GLA GLA . D 4 GAL A 1 402 402 GAL GAL . E 5 MN A 1 289 289 MN MN . F 6 CA A 1 290 290 CA CA . G 7 HOH A 1 500 500 HOH HOH . G 7 HOH A 2 501 501 HOH HOH . G 7 HOH A 3 502 502 HOH HOH . G 7 HOH A 4 503 503 HOH HOH . G 7 HOH A 5 504 504 HOH HOH . G 7 HOH A 6 505 505 HOH HOH . G 7 HOH A 7 506 506 HOH HOH . G 7 HOH A 8 507 507 HOH HOH . G 7 HOH A 9 508 508 HOH HOH . G 7 HOH A 10 509 509 HOH HOH . G 7 HOH A 11 510 510 HOH HOH . G 7 HOH A 12 511 511 HOH HOH . G 7 HOH A 13 512 512 HOH HOH . G 7 HOH A 14 513 513 HOH HOH . G 7 HOH A 15 514 514 HOH HOH . G 7 HOH A 16 515 515 HOH HOH . G 7 HOH A 17 516 516 HOH HOH . G 7 HOH A 18 517 517 HOH HOH . G 7 HOH A 19 518 518 HOH HOH . G 7 HOH A 20 519 519 HOH HOH . G 7 HOH A 21 520 520 HOH HOH . G 7 HOH A 22 521 521 HOH HOH . G 7 HOH A 23 522 522 HOH HOH . G 7 HOH A 24 523 523 HOH HOH . G 7 HOH A 25 524 524 HOH HOH . G 7 HOH A 26 525 525 HOH HOH . G 7 HOH A 27 526 526 HOH HOH . G 7 HOH A 28 527 527 HOH HOH . G 7 HOH A 29 528 528 HOH HOH . G 7 HOH A 30 529 529 HOH HOH . G 7 HOH A 31 530 530 HOH HOH . G 7 HOH A 32 531 531 HOH HOH . G 7 HOH A 33 532 532 HOH HOH . G 7 HOH A 34 533 533 HOH HOH . G 7 HOH A 35 534 534 HOH HOH . G 7 HOH A 36 535 535 HOH HOH . G 7 HOH A 37 536 536 HOH HOH . G 7 HOH A 38 537 537 HOH HOH . G 7 HOH A 39 538 538 HOH HOH . G 7 HOH A 40 539 539 HOH HOH . G 7 HOH A 41 540 540 HOH HOH . G 7 HOH A 42 541 541 HOH HOH . G 7 HOH A 43 542 542 HOH HOH . G 7 HOH A 44 543 543 HOH HOH . G 7 HOH A 45 544 544 HOH HOH . G 7 HOH A 46 545 545 HOH HOH . G 7 HOH A 47 546 546 HOH HOH . G 7 HOH A 48 547 547 HOH HOH . G 7 HOH A 49 548 548 HOH HOH . G 7 HOH A 50 549 549 HOH HOH . G 7 HOH A 51 550 550 HOH HOH . G 7 HOH A 52 551 551 HOH HOH . G 7 HOH A 53 552 552 HOH HOH . G 7 HOH A 54 553 553 HOH HOH . G 7 HOH A 55 554 554 HOH HOH . G 7 HOH A 56 555 555 HOH HOH . G 7 HOH A 57 556 556 HOH HOH . G 7 HOH A 58 557 557 HOH HOH . G 7 HOH A 59 558 558 HOH HOH . G 7 HOH A 60 559 559 HOH HOH . G 7 HOH A 61 560 560 HOH HOH . G 7 HOH A 62 561 561 HOH HOH . G 7 HOH A 63 562 562 HOH HOH . G 7 HOH A 64 563 563 HOH HOH . G 7 HOH A 65 564 564 HOH HOH . G 7 HOH A 66 565 565 HOH HOH . G 7 HOH A 67 566 566 HOH HOH . G 7 HOH A 68 567 567 HOH HOH . G 7 HOH A 69 568 568 HOH HOH . G 7 HOH A 70 569 569 HOH HOH . G 7 HOH A 71 570 570 HOH HOH . G 7 HOH A 72 571 571 HOH HOH . G 7 HOH A 73 572 572 HOH HOH . G 7 HOH A 74 573 573 HOH HOH . G 7 HOH A 75 574 574 HOH HOH . G 7 HOH A 76 575 575 HOH HOH . G 7 HOH A 77 576 576 HOH HOH . G 7 HOH A 78 577 577 HOH HOH . G 7 HOH A 79 578 578 HOH HOH . G 7 HOH A 80 579 579 HOH HOH . G 7 HOH A 81 580 580 HOH HOH . G 7 HOH A 82 581 581 HOH HOH . G 7 HOH A 83 582 582 HOH HOH . G 7 HOH A 84 583 583 HOH HOH . G 7 HOH A 85 584 584 HOH HOH . G 7 HOH A 86 585 585 HOH HOH . G 7 HOH A 87 586 586 HOH HOH . G 7 HOH A 88 587 587 HOH HOH . G 7 HOH A 89 588 588 HOH HOH . G 7 HOH A 90 589 589 HOH HOH . G 7 HOH A 91 590 590 HOH HOH . G 7 HOH A 92 591 591 HOH HOH . G 7 HOH A 93 592 592 HOH HOH . G 7 HOH A 94 593 593 HOH HOH . G 7 HOH A 95 594 594 HOH HOH . G 7 HOH A 96 595 595 HOH HOH . G 7 HOH A 97 596 596 HOH HOH . G 7 HOH A 98 597 597 HOH HOH . G 7 HOH A 99 598 598 HOH HOH . G 7 HOH A 100 599 599 HOH HOH . G 7 HOH A 101 600 600 HOH HOH . G 7 HOH A 102 601 601 HOH HOH . G 7 HOH A 103 602 602 HOH HOH . G 7 HOH A 104 603 603 HOH HOH . G 7 HOH A 105 604 604 HOH HOH . G 7 HOH A 106 605 605 HOH HOH . G 7 HOH A 107 606 606 HOH HOH . G 7 HOH A 108 607 607 HOH HOH . G 7 HOH A 109 608 608 HOH HOH . G 7 HOH A 110 609 609 HOH HOH . G 7 HOH A 111 610 610 HOH HOH . G 7 HOH A 112 611 611 HOH HOH . G 7 HOH A 113 612 612 HOH HOH . G 7 HOH A 114 613 613 HOH HOH . G 7 HOH A 115 614 614 HOH HOH . G 7 HOH A 116 615 615 HOH HOH . G 7 HOH A 117 616 616 HOH HOH . G 7 HOH A 118 617 617 HOH HOH . G 7 HOH A 119 618 618 HOH HOH . G 7 HOH A 120 619 619 HOH HOH . G 7 HOH A 121 620 620 HOH HOH . G 7 HOH A 122 621 621 HOH HOH . G 7 HOH A 123 622 622 HOH HOH . G 7 HOH A 124 623 623 HOH HOH . G 7 HOH A 125 624 624 HOH HOH . G 7 HOH A 126 625 625 HOH HOH . G 7 HOH A 127 626 626 HOH HOH . G 7 HOH A 128 627 627 HOH HOH . G 7 HOH A 129 628 628 HOH HOH . G 7 HOH A 130 629 629 HOH HOH . G 7 HOH A 131 630 630 HOH HOH . G 7 HOH A 132 631 631 HOH HOH . G 7 HOH A 133 632 632 HOH HOH . G 7 HOH A 134 633 633 HOH HOH . G 7 HOH A 135 634 634 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLA . A . C 3 17.061 -1.233 36.442 0.5 16.17 ? C1 GLA 401 A 1 HETATM 2 C C2 GLA . A . C 3 16.052 -0.655 35.445 0.5 16.24 ? C2 GLA 401 A 1 HETATM 3 C C3 GLA . A . C 3 14.656 -1.215 35.711 0.5 16.49 ? C3 GLA 401 A 1 HETATM 4 C C4 GLA . A . C 3 14.722 -2.738 35.712 0.5 16.41 ? C4 GLA 401 A 1 HETATM 5 C C5 GLA . A . C 3 15.78 -3.225 36.702 0.5 17.62 ? C5 GLA 401 A 1 HETATM 6 C C6 GLA . A . C 3 15.941 -4.731 36.706 0.5 18.3 ? C6 GLA 401 A 1 HETATM 7 O O1 GLA . A . C 3 16.716 -0.868 37.733 0.45 14.97 ? O1 GLA 401 A 1 HETATM 8 O O2 GLA . A . C 3 16.025 0.757 35.563 0.5 16.03 ? O2 GLA 401 A 1 HETATM 9 O O3 GLA . A . C 3 13.751 -0.772 34.705 0.5 15.16 ? O3 GLA 401 A 1 HETATM 10 O O4 GLA . A . C 3 15.048 -3.197 34.409 0.5 15.45 ? O4 GLA 401 A 1 HETATM 11 O O5 GLA . A . C 3 17.066 -2.661 36.371 0.5 17.36 ? O5 GLA 401 A 1 HETATM 12 O O6 GLA . A . C 3 16.719 -5.146 37.82 0.5 19.65 ? O6 GLA 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 12 #