data_1AY2 # _model_server_result.job_id pAnPOkUuxEluURtLUV6biw _model_server_result.datetime_utc '2024-12-26 15:17:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ay2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 1AY2 # _exptl.entry_id 1AY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AY2 _cell.length_a 127.58 _cell.length_b 121.08 _cell.length_c 26.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLA _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 161 NAG 2 n B GLA 2 B 2 GLA ? 160 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 121 A CYS 121 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? covale ? covale1 A C PHE 1 A PHE 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale2 A OG SER 63 A SER 63 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale3 B O3 NAG . B NAG 1 1_555 B C1 GLA . B GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? metalc ? metalc1 A NE2 HIS 54 A HIS 54 1_555 C PT PT . A PT 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.381 ? metalc ? metalc2 A NE2 HIS 54 A HIS 54 4_566 C PT PT . A PT 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.383 ? metalc ? metalc3 C PT PT . A PT 200 1_555 E O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? metalc ? metalc4 C PT PT . A PT 200 1_555 E O HOH . A HOH 333 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? metalc ? metalc5 C PT PT . A PT 200 1_555 E O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? metalc ? metalc6 C PT PT . A PT 200 1_555 E O HOH . A HOH 348 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AY2 _atom_sites.fract_transf_matrix[1][1] 0.007838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PT A 1 200 200 PT PT . D 4 HTO A 1 162 162 HTO HTO . E 5 HOH A 1 301 301 HOH HOH . E 5 HOH A 2 303 303 HOH HOH . E 5 HOH A 3 307 307 HOH HOH . E 5 HOH A 4 308 308 HOH HOH . E 5 HOH A 5 310 310 HOH HOH . E 5 HOH A 6 311 311 HOH HOH . E 5 HOH A 7 314 314 HOH HOH . E 5 HOH A 8 315 315 HOH HOH . E 5 HOH A 9 317 317 HOH HOH . E 5 HOH A 10 322 322 HOH HOH . E 5 HOH A 11 323 323 HOH HOH . E 5 HOH A 12 324 324 HOH HOH . E 5 HOH A 13 325 325 HOH HOH . E 5 HOH A 14 326 326 HOH HOH . E 5 HOH A 15 328 328 HOH HOH . E 5 HOH A 16 333 333 HOH HOH . E 5 HOH A 17 334 334 HOH HOH . E 5 HOH A 18 335 335 HOH HOH . E 5 HOH A 19 336 336 HOH HOH . E 5 HOH A 20 338 338 HOH HOH . E 5 HOH A 21 340 340 HOH HOH . E 5 HOH A 22 341 341 HOH HOH . E 5 HOH A 23 343 343 HOH HOH . E 5 HOH A 24 344 344 HOH HOH . E 5 HOH A 25 345 345 HOH HOH . E 5 HOH A 26 346 346 HOH HOH . E 5 HOH A 27 347 347 HOH HOH . E 5 HOH A 28 348 348 HOH HOH . E 5 HOH A 29 352 352 HOH HOH . E 5 HOH A 30 353 353 HOH HOH . E 5 HOH A 31 354 354 HOH HOH . E 5 HOH A 32 355 355 HOH HOH . E 5 HOH A 33 356 356 HOH HOH . E 5 HOH A 34 357 357 HOH HOH . E 5 HOH A 35 358 358 HOH HOH . E 5 HOH A 36 359 359 HOH HOH . E 5 HOH A 37 361 361 HOH HOH . E 5 HOH A 38 362 362 HOH HOH . E 5 HOH A 39 364 364 HOH HOH . E 5 HOH A 40 365 365 HOH HOH . E 5 HOH A 41 366 366 HOH HOH . E 5 HOH A 42 367 367 HOH HOH . E 5 HOH A 43 371 371 HOH HOH . E 5 HOH A 44 372 372 HOH HOH . E 5 HOH A 45 375 375 HOH HOH . E 5 HOH A 46 376 376 HOH HOH . E 5 HOH A 47 377 377 HOH HOH . E 5 HOH A 48 378 378 HOH HOH . E 5 HOH A 49 381 381 HOH HOH . E 5 HOH A 50 382 382 HOH HOH . E 5 HOH A 51 383 383 HOH HOH . E 5 HOH A 52 384 384 HOH HOH . E 5 HOH A 53 386 386 HOH HOH . E 5 HOH A 54 387 387 HOH HOH . E 5 HOH A 55 388 388 HOH HOH . E 5 HOH A 56 389 389 HOH HOH . E 5 HOH A 57 390 390 HOH HOH . E 5 HOH A 58 391 391 HOH HOH . E 5 HOH A 59 394 394 HOH HOH . E 5 HOH A 60 395 395 HOH HOH . E 5 HOH A 61 396 396 HOH HOH . E 5 HOH A 62 397 397 HOH HOH . E 5 HOH A 63 398 398 HOH HOH . E 5 HOH A 64 399 399 HOH HOH . E 5 HOH A 65 401 401 HOH HOH . E 5 HOH A 66 403 403 HOH HOH . E 5 HOH A 67 404 404 HOH HOH . E 5 HOH A 68 405 405 HOH HOH . E 5 HOH A 69 406 406 HOH HOH . E 5 HOH A 70 407 407 HOH HOH . E 5 HOH A 71 408 408 HOH HOH . E 5 HOH A 72 409 409 HOH HOH . E 5 HOH A 73 415 415 HOH HOH . E 5 HOH A 74 416 416 HOH HOH . E 5 HOH A 75 420 420 HOH HOH . E 5 HOH A 76 425 425 HOH HOH . E 5 HOH A 77 426 426 HOH HOH . E 5 HOH A 78 427 427 HOH HOH . E 5 HOH A 79 430 430 HOH HOH . E 5 HOH A 80 431 431 HOH HOH . E 5 HOH A 81 432 432 HOH HOH . E 5 HOH A 82 433 433 HOH HOH . E 5 HOH A 83 436 436 HOH HOH . E 5 HOH A 84 437 437 HOH HOH . E 5 HOH A 85 438 438 HOH HOH . E 5 HOH A 86 440 440 HOH HOH . E 5 HOH A 87 503 503 HOH HOH . E 5 HOH A 88 508 508 HOH HOH . E 5 HOH A 89 509 509 HOH HOH . E 5 HOH A 90 510 510 HOH HOH . E 5 HOH A 91 513 513 HOH HOH . E 5 HOH A 92 514 514 HOH HOH . E 5 HOH A 93 515 515 HOH HOH . E 5 HOH A 94 517 517 HOH HOH . E 5 HOH A 95 518 518 HOH HOH . E 5 HOH A 96 522 522 HOH HOH . E 5 HOH A 97 602 602 HOH HOH . E 5 HOH A 98 603 603 HOH HOH . E 5 HOH A 99 604 604 HOH HOH . E 5 HOH A 100 605 605 HOH HOH . E 5 HOH A 101 606 606 HOH HOH . E 5 HOH A 102 608 608 HOH HOH . E 5 HOH A 103 609 609 HOH HOH . E 5 HOH A 104 610 610 HOH HOH . E 5 HOH A 105 701 701 HOH HOH . E 5 HOH A 106 702 702 HOH HOH . E 5 HOH A 107 801 801 HOH HOH . E 5 HOH A 108 802 802 HOH HOH . E 5 HOH A 109 803 803 HOH HOH . E 5 HOH A 110 804 804 HOH HOH . E 5 HOH A 111 805 805 HOH HOH . E 5 HOH A 112 806 806 HOH HOH . E 5 HOH A 113 807 807 HOH HOH . E 5 HOH A 114 808 808 HOH HOH . E 5 HOH A 115 809 809 HOH HOH . E 5 HOH A 116 810 810 HOH HOH . E 5 HOH A 117 811 811 HOH HOH . E 5 HOH A 118 812 812 HOH HOH . E 5 HOH A 119 813 813 HOH HOH . E 5 HOH A 120 814 814 HOH HOH . E 5 HOH A 121 815 815 HOH HOH . E 5 HOH A 122 816 816 HOH HOH . E 5 HOH A 123 817 817 HOH HOH . E 5 HOH A 124 818 818 HOH HOH . E 5 HOH A 125 819 819 HOH HOH . E 5 HOH A 126 820 820 HOH HOH . E 5 HOH A 127 821 821 HOH HOH . E 5 HOH A 128 822 822 HOH HOH . E 5 HOH A 129 823 823 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 50.361 _atom_site.Cartn_y 60.539 _atom_site.Cartn_z 13.43 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 73.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 200 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #