data_1AYF # _model_server_result.job_id YOs3lAx2_QdROm88qOOXZw _model_server_result.datetime_utc '2024-10-12 22:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ayf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 1AYF # _exptl.entry_id 1AYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AYF _cell.length_a 44.18 _cell.length_b 78.34 _cell.length_c 60.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 43 A CYS 46 1_555 C FE1 FES . A FES 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A SG CYS 49 A CYS 52 1_555 C FE1 FES . A FES 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc3 A SG CYS 52 A CYS 55 1_555 C FE2 FES . A FES 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 A SG CYS 89 A CYS 92 1_555 C FE2 FES . A FES 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 B SG CYS 43 B CYS 46 1_555 D FE1 FES . B FES 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 B SG CYS 49 B CYS 52 1_555 D FE1 FES . B FES 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 B SG CYS 52 B CYS 55 1_555 D FE2 FES . B FES 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc8 B SG CYS 89 B CYS 92 1_555 D FE2 FES . B FES 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 1AYF _atom_sites.fract_transf_matrix[1][1] 0.022635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FES A 1 109 109 FES FES . D 2 FES B 1 109 109 FES FES . E 3 GOL B 1 600 600 GOL GOL . F 4 HOH A 1 110 1 HOH HOH . F 4 HOH A 2 111 10 HOH HOH . F 4 HOH A 3 112 15 HOH HOH . F 4 HOH A 4 113 16 HOH HOH . F 4 HOH A 5 114 20 HOH HOH . F 4 HOH A 6 115 22 HOH HOH . F 4 HOH A 7 116 25 HOH HOH . F 4 HOH A 8 117 28 HOH HOH . F 4 HOH A 9 118 29 HOH HOH . F 4 HOH A 10 119 33 HOH HOH . F 4 HOH A 11 120 41 HOH HOH . F 4 HOH A 12 121 45 HOH HOH . F 4 HOH A 13 122 49 HOH HOH . F 4 HOH A 14 123 51 HOH HOH . F 4 HOH A 15 124 53 HOH HOH . F 4 HOH A 16 125 55 HOH HOH . F 4 HOH A 17 126 58 HOH HOH . F 4 HOH A 18 127 59 HOH HOH . F 4 HOH A 19 128 60 HOH HOH . F 4 HOH A 20 129 61 HOH HOH . F 4 HOH A 21 130 64 HOH HOH . F 4 HOH A 22 131 67 HOH HOH . F 4 HOH A 23 132 70 HOH HOH . F 4 HOH A 24 133 72 HOH HOH . F 4 HOH A 25 134 73 HOH HOH . F 4 HOH A 26 135 74 HOH HOH . F 4 HOH A 27 136 75 HOH HOH . F 4 HOH A 28 137 76 HOH HOH . F 4 HOH A 29 138 78 HOH HOH . F 4 HOH A 30 139 81 HOH HOH . F 4 HOH A 31 140 83 HOH HOH . F 4 HOH A 32 141 84 HOH HOH . F 4 HOH A 33 142 88 HOH HOH . F 4 HOH A 34 143 90 HOH HOH . F 4 HOH A 35 144 91 HOH HOH . F 4 HOH A 36 145 93 HOH HOH . F 4 HOH A 37 146 95 HOH HOH . F 4 HOH A 38 147 97 HOH HOH . F 4 HOH A 39 148 98 HOH HOH . F 4 HOH A 40 149 99 HOH HOH . F 4 HOH A 41 150 102 HOH HOH . F 4 HOH A 42 151 107 HOH HOH . F 4 HOH A 43 152 108 HOH HOH . F 4 HOH A 44 153 109 HOH HOH . F 4 HOH A 45 154 117 HOH HOH . F 4 HOH A 46 155 119 HOH HOH . F 4 HOH A 47 156 122 HOH HOH . F 4 HOH A 48 157 131 HOH HOH . F 4 HOH A 49 158 134 HOH HOH . F 4 HOH A 50 159 136 HOH HOH . F 4 HOH A 51 160 138 HOH HOH . F 4 HOH A 52 161 139 HOH HOH . F 4 HOH A 53 162 141 HOH HOH . F 4 HOH A 54 163 142 HOH HOH . F 4 HOH A 55 164 145 HOH HOH . F 4 HOH A 56 165 148 HOH HOH . F 4 HOH A 57 166 149 HOH HOH . F 4 HOH A 58 167 161 HOH HOH . F 4 HOH A 59 168 162 HOH HOH . F 4 HOH A 60 169 164 HOH HOH . F 4 HOH A 61 170 165 HOH HOH . G 4 HOH B 1 601 2 HOH HOH . G 4 HOH B 2 602 3 HOH HOH . G 4 HOH B 3 603 4 HOH HOH . G 4 HOH B 4 604 5 HOH HOH . G 4 HOH B 5 605 6 HOH HOH . G 4 HOH B 6 606 7 HOH HOH . G 4 HOH B 7 607 8 HOH HOH . G 4 HOH B 8 608 9 HOH HOH . G 4 HOH B 9 609 11 HOH HOH . G 4 HOH B 10 610 12 HOH HOH . G 4 HOH B 11 611 13 HOH HOH . G 4 HOH B 12 612 14 HOH HOH . G 4 HOH B 13 613 17 HOH HOH . G 4 HOH B 14 614 18 HOH HOH . G 4 HOH B 15 615 19 HOH HOH . G 4 HOH B 16 616 21 HOH HOH . G 4 HOH B 17 617 23 HOH HOH . G 4 HOH B 18 618 24 HOH HOH . G 4 HOH B 19 619 26 HOH HOH . G 4 HOH B 20 620 27 HOH HOH . G 4 HOH B 21 621 30 HOH HOH . G 4 HOH B 22 622 31 HOH HOH . G 4 HOH B 23 623 32 HOH HOH . G 4 HOH B 24 624 34 HOH HOH . G 4 HOH B 25 625 35 HOH HOH . G 4 HOH B 26 626 36 HOH HOH . G 4 HOH B 27 627 37 HOH HOH . G 4 HOH B 28 628 38 HOH HOH . G 4 HOH B 29 629 39 HOH HOH . G 4 HOH B 30 630 40 HOH HOH . G 4 HOH B 31 631 42 HOH HOH . G 4 HOH B 32 632 43 HOH HOH . G 4 HOH B 33 633 44 HOH HOH . G 4 HOH B 34 634 46 HOH HOH . G 4 HOH B 35 635 47 HOH HOH . G 4 HOH B 36 636 48 HOH HOH . G 4 HOH B 37 637 50 HOH HOH . G 4 HOH B 38 638 52 HOH HOH . G 4 HOH B 39 639 54 HOH HOH . G 4 HOH B 40 640 56 HOH HOH . G 4 HOH B 41 641 57 HOH HOH . G 4 HOH B 42 642 62 HOH HOH . G 4 HOH B 43 643 63 HOH HOH . G 4 HOH B 44 644 65 HOH HOH . G 4 HOH B 45 645 66 HOH HOH . G 4 HOH B 46 646 68 HOH HOH . G 4 HOH B 47 647 69 HOH HOH . G 4 HOH B 48 648 71 HOH HOH . G 4 HOH B 49 649 77 HOH HOH . G 4 HOH B 50 650 79 HOH HOH . G 4 HOH B 51 651 80 HOH HOH . G 4 HOH B 52 652 82 HOH HOH . G 4 HOH B 53 653 85 HOH HOH . G 4 HOH B 54 654 86 HOH HOH . G 4 HOH B 55 655 87 HOH HOH . G 4 HOH B 56 656 89 HOH HOH . G 4 HOH B 57 657 92 HOH HOH . G 4 HOH B 58 658 94 HOH HOH . G 4 HOH B 59 659 96 HOH HOH . G 4 HOH B 60 660 100 HOH HOH . G 4 HOH B 61 661 101 HOH HOH . G 4 HOH B 62 662 103 HOH HOH . G 4 HOH B 63 663 104 HOH HOH . G 4 HOH B 64 664 105 HOH HOH . G 4 HOH B 65 665 106 HOH HOH . G 4 HOH B 66 666 110 HOH HOH . G 4 HOH B 67 667 111 HOH HOH . G 4 HOH B 68 668 112 HOH HOH . G 4 HOH B 69 669 113 HOH HOH . G 4 HOH B 70 670 114 HOH HOH . G 4 HOH B 71 671 115 HOH HOH . G 4 HOH B 72 672 116 HOH HOH . G 4 HOH B 73 673 118 HOH HOH . G 4 HOH B 74 674 120 HOH HOH . G 4 HOH B 75 675 121 HOH HOH . G 4 HOH B 76 676 123 HOH HOH . G 4 HOH B 77 677 124 HOH HOH . G 4 HOH B 78 678 125 HOH HOH . G 4 HOH B 79 679 126 HOH HOH . G 4 HOH B 80 680 127 HOH HOH . G 4 HOH B 81 681 128 HOH HOH . G 4 HOH B 82 682 129 HOH HOH . G 4 HOH B 83 683 130 HOH HOH . G 4 HOH B 84 684 132 HOH HOH . G 4 HOH B 85 685 133 HOH HOH . G 4 HOH B 86 686 135 HOH HOH . G 4 HOH B 87 687 137 HOH HOH . G 4 HOH B 88 688 140 HOH HOH . G 4 HOH B 89 689 143 HOH HOH . G 4 HOH B 90 690 144 HOH HOH . G 4 HOH B 91 691 146 HOH HOH . G 4 HOH B 92 692 147 HOH HOH . G 4 HOH B 93 693 150 HOH HOH . G 4 HOH B 94 694 151 HOH HOH . G 4 HOH B 95 695 152 HOH HOH . G 4 HOH B 96 696 153 HOH HOH . G 4 HOH B 97 697 154 HOH HOH . G 4 HOH B 98 698 155 HOH HOH . G 4 HOH B 99 699 156 HOH HOH . G 4 HOH B 100 700 157 HOH HOH . G 4 HOH B 101 701 158 HOH HOH . G 4 HOH B 102 702 159 HOH HOH . G 4 HOH B 103 703 160 HOH HOH . G 4 HOH B 104 704 163 HOH HOH . G 4 HOH B 105 705 166 HOH HOH . G 4 HOH B 106 706 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -21.072 -2.95 8.778 0.5 34.65 ? C1 GOL 600 B 1 HETATM 2 O O1 GOL . . . E 3 -20.076 -2.875 9.75 0.5 32.97 ? O1 GOL 600 B 1 HETATM 3 C C2 GOL . . . E 3 -21.356 -1.624 8.225 0.5 34.57 ? C2 GOL 600 B 1 HETATM 4 O O2 GOL . . . E 3 -22.749 -1.582 8.228 0.5 34.21 ? O2 GOL 600 B 1 HETATM 5 C C3 GOL . . . E 3 -20.916 -0.475 9.056 0.5 33.41 ? C3 GOL 600 B 1 HETATM 6 O O3 GOL . . . E 3 -21.406 0.701 8.42 0.5 33.74 ? O3 GOL 600 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 6 #