data_1AZI # _model_server_result.job_id r1StVIBjgSn37mC6meL89A _model_server_result.datetime_utc '2024-11-16 04:31:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1azi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 1AZI # _exptl.entry_id 1AZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.16 _cell.angle_gamma 90 _cell.entry_id 1AZI _cell.length_a 64.285 _cell.length_b 28.909 _cell.length_c 35.874 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc2 D FE HEM . A HEM 154 1_555 C N1 AZI . A AZI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 D FE HEM . A HEM 154 1_555 C N2 AZI . A AZI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 118 n n CHA C4D HEM doub 119 n n CHA HHA HEM sing 120 n n CHB C4A HEM sing 121 n n CHB C1B HEM doub 122 n n CHB HHB HEM sing 123 n n CHC C4B HEM sing 124 n n CHC C1C HEM doub 125 n n CHC HHC HEM sing 126 n n CHD C4C HEM doub 127 n n CHD C1D HEM sing 128 n n CHD HHD HEM sing 129 n n C1A C2A HEM doub 130 n y C1A NA HEM sing 131 n y C2A C3A HEM sing 132 n y C2A CAA HEM sing 133 n n C3A C4A HEM doub 134 n y C3A CMA HEM sing 135 n n C4A NA HEM sing 136 n y CMA HMA HEM sing 137 n n CMA HMAA HEM sing 138 n n CMA HMAB HEM sing 139 n n CAA CBA HEM sing 140 n n CAA HAA HEM sing 141 n n CAA HAAA HEM sing 142 n n CBA CGA HEM sing 143 n n CBA HBA HEM sing 144 n n CBA HBAA HEM sing 145 n n CGA O1A HEM doub 146 n n CGA O2A HEM sing 147 n n C1B C2B HEM sing 148 n n C1B NB HEM sing 149 n n C2B C3B HEM doub 150 n n C2B CMB HEM sing 151 n n C3B C4B HEM sing 152 n n C3B CAB HEM sing 153 n n C4B NB HEM doub 154 n n CMB HMB HEM sing 155 n n CMB HMBA HEM sing 156 n n CMB HMBB HEM sing 157 n n CAB CBB HEM doub 158 n n CAB HAB HEM sing 159 n n CBB HBB HEM sing 160 n n CBB HBBA HEM sing 161 n n C1C C2C HEM sing 162 n y C1C NC HEM sing 163 n y C2C C3C HEM doub 164 n y C2C CMC HEM sing 165 n n C3C C4C HEM sing 166 n y C3C CAC HEM sing 167 n n C4C NC HEM sing 168 n y CMC HMC HEM sing 169 n n CMC HMCA HEM sing 170 n n CMC HMCB HEM sing 171 n n CAC CBC HEM doub 172 n n CAC HAC HEM sing 173 n n CBC HBC HEM sing 174 n n CBC HBCA HEM sing 175 n n C1D C2D HEM sing 176 n n C1D ND HEM doub 177 n n C2D C3D HEM doub 178 n n C2D CMD HEM sing 179 n n C3D C4D HEM sing 180 n n C3D CAD HEM sing 181 n n C4D ND HEM sing 182 n n CMD HMD HEM sing 183 n n CMD HMDA HEM sing 184 n n CMD HMDB HEM sing 185 n n CAD CBD HEM sing 186 n n CAD HAD HEM sing 187 n n CAD HADA HEM sing 188 n n CBD CGD HEM sing 189 n n CBD HBD HEM sing 190 n n CBD HBDA HEM sing 191 n n CGD O1D HEM doub 192 n n CGD O2D HEM sing 193 n n O2A H2A HEM sing 194 n n O2D H2D HEM sing 195 n n FE NA HEM sing 196 n n FE NB HEM sing 197 n n FE NC HEM sing 198 n n FE ND HEM sing 199 n n # _atom_sites.entry_id 1AZI _atom_sites.fract_transf_matrix[1][1] 0.015556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 155 155 SO4 SO4 . C 3 AZI A 1 300 300 AZI AZI . D 4 HEM A 1 154 154 HEM HEM . E 5 HOH A 1 157 157 HOH HOH . E 5 HOH A 2 159 159 HOH HOH . E 5 HOH A 3 160 160 HOH HOH . E 5 HOH A 4 161 161 HOH HOH . E 5 HOH A 5 162 162 HOH HOH . E 5 HOH A 6 163 163 HOH HOH . E 5 HOH A 7 164 164 HOH HOH . E 5 HOH A 8 165 165 HOH HOH . E 5 HOH A 9 166 166 HOH HOH . E 5 HOH A 10 167 167 HOH HOH . E 5 HOH A 11 168 168 HOH HOH . E 5 HOH A 12 169 169 HOH HOH . E 5 HOH A 13 170 170 HOH HOH . E 5 HOH A 14 171 171 HOH HOH . E 5 HOH A 15 172 172 HOH HOH . E 5 HOH A 16 174 174 HOH HOH . E 5 HOH A 17 175 175 HOH HOH . E 5 HOH A 18 177 177 HOH HOH . E 5 HOH A 19 179 179 HOH HOH . E 5 HOH A 20 180 180 HOH HOH . E 5 HOH A 21 182 182 HOH HOH . E 5 HOH A 22 186 186 HOH HOH . E 5 HOH A 23 187 187 HOH HOH . E 5 HOH A 24 188 188 HOH HOH . E 5 HOH A 25 189 189 HOH HOH . E 5 HOH A 26 190 190 HOH HOH . E 5 HOH A 27 192 192 HOH HOH . E 5 HOH A 28 193 193 HOH HOH . E 5 HOH A 29 194 194 HOH HOH . E 5 HOH A 30 196 196 HOH HOH . E 5 HOH A 31 197 197 HOH HOH . E 5 HOH A 32 198 198 HOH HOH . E 5 HOH A 33 199 199 HOH HOH . E 5 HOH A 34 202 202 HOH HOH . E 5 HOH A 35 203 203 HOH HOH . E 5 HOH A 36 204 204 HOH HOH . E 5 HOH A 37 207 207 HOH HOH . E 5 HOH A 38 208 208 HOH HOH . E 5 HOH A 39 210 210 HOH HOH . E 5 HOH A 40 214 214 HOH HOH . E 5 HOH A 41 215 215 HOH HOH . E 5 HOH A 42 216 216 HOH HOH . E 5 HOH A 43 218 218 HOH HOH . E 5 HOH A 44 219 219 HOH HOH . E 5 HOH A 45 220 220 HOH HOH . E 5 HOH A 46 221 221 HOH HOH . E 5 HOH A 47 222 222 HOH HOH . E 5 HOH A 48 223 223 HOH HOH . E 5 HOH A 49 224 224 HOH HOH . E 5 HOH A 50 225 225 HOH HOH . E 5 HOH A 51 226 226 HOH HOH . E 5 HOH A 52 227 227 HOH HOH . E 5 HOH A 53 228 228 HOH HOH . E 5 HOH A 54 229 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 15.61 33.456 5.143 1 11.43 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . D 4 13.822 30.427 8.423 1 10.45 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . D 4 13.041 27.092 4.99 1 13.8 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . D 4 15.237 29.995 1.803 1 10.9 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . D 4 15.092 32.931 6.309 1 8.44 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . D 4 14.912 33.671 7.535 1 8.98 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . D 4 14.436 32.833 8.462 1 7.73 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . D 4 14.27 31.559 7.805 1 7.39 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . D 4 14.122 33.147 9.94 1 7.5 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . D 4 15.238 35.18 7.679 1 10.99 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . D 4 13.972 36.072 7.905 1 13.9 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . D 4 13.104 36.173 6.657 1 14.64 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . D 4 13.712 36.582 5.633 1 15.09 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . D 4 11.941 35.719 6.737 1 12.18 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . D 4 13.395 29.321 7.735 1 12.53 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . D 4 12.747 28.191 8.379 1 13.81 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . D 4 12.592 27.237 7.444 1 12.65 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . D 4 13.092 27.764 6.201 1 12.7 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . D 4 12.437 28.124 9.898 1 13.76 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . D 4 11.956 25.88 7.688 1 13.97 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . D 4 12.233 24.604 7.01 1 14.17 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . D 4 13.601 27.602 3.834 1 13.54 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . D 4 13.808 26.826 2.612 1 14.15 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . D 4 14.437 27.605 1.737 1 13.49 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . D 4 14.671 28.89 2.369 1 13.82 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . D 4 13.357 25.342 2.482 1 11.44 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . D 4 14.909 27.364 0.29 1 14.35 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . D 4 14.759 26.036 -0.355 1 14.07 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . D 4 15.506 31.209 2.393 1 10.14 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . D 4 16.043 32.396 1.756 1 9.11 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . D 4 16.144 33.335 2.681 1 10.96 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . D 4 15.652 32.776 3.927 1 12.45 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . D 4 16.505 32.456 0.297 1 7.78 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . D 4 16.809 34.734 2.623 1 15.78 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . D 4 18.257 34.659 2.083 1 19.03 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . D 4 19.281 35.471 2.811 1 22.18 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . D 4 19.835 36.37 2.094 1 24.32 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . D 4 19.496 35.231 4.039 1 23.24 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . D 4 14.687 31.64 6.488 1 7.38 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . D 4 13.594 29.031 6.399 1 12.13 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . D 4 14.147 28.842 3.671 1 13.52 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . D 4 15.272 31.476 3.726 1 10.22 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . D 4 14.401 30.289 5.026 1 14.28 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #