data_1AZS # _model_server_result.job_id yHYWx1-QvuQtc2NrpS7Pvg _model_server_result.datetime_utc '2024-11-26 20:06:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1azs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 1AZS # _exptl.entry_id 1AZS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AZS _cell.length_a 119 _cell.length_b 134.05 _cell.length_c 70.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AZS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 119 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG SER 54 C SER 54 1_555 E MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc2 C OG1 THR 204 C THR 204 1_555 E MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc3 E MG MG . C MG 403 1_555 F O2G GSP . C GSP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc4 E MG MG . C MG 403 1_555 F O2B GSP . C GSP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 E MG MG . C MG 403 1_555 I O HOH . C HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 E MG MG . C MG 403 1_555 I O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.737 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O3B GSP sing 221 n n PG S1G GSP doub 222 n n PG O2G GSP sing 223 n n PG O3G GSP sing 224 n n O3B PB GSP sing 225 n n O2G HOG2 GSP sing 226 n n O3G HOG3 GSP sing 227 n n PB O1B GSP doub 228 n n PB O2B GSP sing 229 n n PB O3A GSP sing 230 n n O2B HOB2 GSP sing 231 n n PA O1A GSP doub 232 n n PA O2A GSP sing 233 n n PA O3A GSP sing 234 n n PA O5' GSP sing 235 n n O2A HOA2 GSP sing 236 n n O5' C5' GSP sing 237 n n C5' C4' GSP sing 238 n n C5' "H5'1" GSP sing 239 n n C5' "H5'2" GSP sing 240 n n C4' O4' GSP sing 241 n n C4' C3' GSP sing 242 n n C4' H4' GSP sing 243 n n O4' C1' GSP sing 244 n n C3' O3' GSP sing 245 n n C3' C2' GSP sing 246 n n C3' H3' GSP sing 247 n n O3' HO3' GSP sing 248 n n C2' O2' GSP sing 249 n n C2' C1' GSP sing 250 n n C2' H2' GSP sing 251 n n O2' HO2' GSP sing 252 n n C1' N9 GSP sing 253 n n C1' H1' GSP sing 254 n n N9 C8 GSP sing 255 n y N9 C4 GSP sing 256 n y C8 N7 GSP doub 257 n y C8 H8 GSP sing 258 n n N7 C5 GSP sing 259 n y C5 C6 GSP sing 260 n n C5 C4 GSP doub 261 n y C6 O6 GSP doub 262 n n C6 N1 GSP sing 263 n n N1 C2 GSP sing 264 n n N1 HN1 GSP sing 265 n n C2 N2 GSP sing 266 n n C2 N3 GSP doub 267 n n N2 HN21 GSP sing 268 n n N2 HN22 GSP sing 269 n n N3 C4 GSP sing 270 n n # _atom_sites.entry_id 1AZS _atom_sites.fract_transf_matrix[1][1] 0.008403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FKP A 1 1 1 FKP FKP . E 5 MG C 1 403 396 MG MG . F 6 GSP C 1 404 395 GSP GSP . G 7 HOH A 1 15 15 HOH HOH . G 7 HOH A 2 32 32 HOH HOH . G 7 HOH A 3 44 44 HOH HOH . G 7 HOH A 4 54 54 HOH HOH . G 7 HOH A 5 55 55 HOH HOH . G 7 HOH A 6 57 57 HOH HOH . G 7 HOH A 7 58 58 HOH HOH . G 7 HOH A 8 59 59 HOH HOH . G 7 HOH A 9 60 60 HOH HOH . G 7 HOH A 10 63 63 HOH HOH . G 7 HOH A 11 80 80 HOH HOH . G 7 HOH A 12 81 81 HOH HOH . G 7 HOH A 13 84 84 HOH HOH . H 7 HOH B 1 20 20 HOH HOH . H 7 HOH B 2 21 21 HOH HOH . H 7 HOH B 3 23 23 HOH HOH . H 7 HOH B 4 24 24 HOH HOH . H 7 HOH B 5 27 27 HOH HOH . H 7 HOH B 6 28 28 HOH HOH . H 7 HOH B 7 30 30 HOH HOH . H 7 HOH B 8 31 31 HOH HOH . H 7 HOH B 9 33 33 HOH HOH . H 7 HOH B 10 41 41 HOH HOH . H 7 HOH B 11 42 42 HOH HOH . H 7 HOH B 12 45 45 HOH HOH . H 7 HOH B 13 50 50 HOH HOH . H 7 HOH B 14 51 51 HOH HOH . H 7 HOH B 15 53 53 HOH HOH . H 7 HOH B 16 56 56 HOH HOH . H 7 HOH B 17 61 61 HOH HOH . H 7 HOH B 18 65 65 HOH HOH . H 7 HOH B 19 67 67 HOH HOH . H 7 HOH B 20 68 68 HOH HOH . H 7 HOH B 21 69 69 HOH HOH . H 7 HOH B 22 82 82 HOH HOH . H 7 HOH B 23 83 83 HOH HOH . I 7 HOH C 1 405 1 HOH HOH . I 7 HOH C 2 406 2 HOH HOH . I 7 HOH C 3 407 3 HOH HOH . I 7 HOH C 4 408 4 HOH HOH . I 7 HOH C 5 409 5 HOH HOH . I 7 HOH C 6 410 6 HOH HOH . I 7 HOH C 7 411 7 HOH HOH . I 7 HOH C 8 412 8 HOH HOH . I 7 HOH C 9 413 9 HOH HOH . I 7 HOH C 10 414 10 HOH HOH . I 7 HOH C 11 415 11 HOH HOH . I 7 HOH C 12 416 12 HOH HOH . I 7 HOH C 13 417 13 HOH HOH . I 7 HOH C 14 418 14 HOH HOH . I 7 HOH C 15 419 16 HOH HOH . I 7 HOH C 16 420 18 HOH HOH . I 7 HOH C 17 421 19 HOH HOH . I 7 HOH C 18 422 26 HOH HOH . I 7 HOH C 19 423 35 HOH HOH . I 7 HOH C 20 424 36 HOH HOH . I 7 HOH C 21 425 37 HOH HOH . I 7 HOH C 22 426 40 HOH HOH . I 7 HOH C 23 427 46 HOH HOH . I 7 HOH C 24 428 47 HOH HOH . I 7 HOH C 25 429 49 HOH HOH . I 7 HOH C 26 430 70 HOH HOH . I 7 HOH C 27 431 71 HOH HOH . I 7 HOH C 28 432 72 HOH HOH . I 7 HOH C 29 433 73 HOH HOH . I 7 HOH C 30 434 74 HOH HOH . I 7 HOH C 31 435 76 HOH HOH . I 7 HOH C 32 436 78 HOH HOH . I 7 HOH C 33 437 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . F 6 23.83 3.215 28.573 1 38.31 ? PG GSP 404 C 1 HETATM 2 O O3B GSP . . . F 6 22.624 3.543 27.464 1 31.58 ? O3B GSP 404 C 1 HETATM 3 S S1G GSP . . . F 6 25.024 4.656 28.344 1 42.66 ? S1G GSP 404 C 1 HETATM 4 O O2G GSP . . . F 6 23.155 3.123 29.901 1 33.96 ? O2G GSP 404 C 1 HETATM 5 O O3G GSP . . . F 6 24.483 1.971 28.109 1 41.29 ? O3G GSP 404 C 1 HETATM 6 P PB GSP . . . F 6 21.299 2.681 27.223 1 30.93 ? PB GSP 404 C 1 HETATM 7 O O1B GSP . . . F 6 21.682 1.52 26.378 1 27.64 ? O1B GSP 404 C 1 HETATM 8 O O2B GSP . . . F 6 20.662 2.44 28.531 1 29.34 ? O2B GSP 404 C 1 HETATM 9 P PA GSP . . . F 6 19.167 4.583 26.875 1 28.33 ? PA GSP 404 C 1 HETATM 10 O O1A GSP . . . F 6 18.095 3.679 27.267 1 34.51 ? O1A GSP 404 C 1 HETATM 11 O O2A GSP . . . F 6 19.72 5.607 27.799 1 31.43 ? O2A GSP 404 C 1 HETATM 12 O O3A GSP . . . F 6 20.348 3.641 26.324 1 30.77 ? O3A GSP 404 C 1 HETATM 13 O O5' GSP . . . F 6 18.703 5.274 25.546 1 34.44 ? O5' GSP 404 C 1 HETATM 14 C C5' GSP . . . F 6 19.275 6.554 25.243 1 36.52 ? C5' GSP 404 C 1 HETATM 15 C C4' GSP . . . F 6 18.245 7.427 24.59 1 36.28 ? C4' GSP 404 C 1 HETATM 16 O O4' GSP . . . F 6 17.763 6.765 23.419 1 37.48 ? O4' GSP 404 C 1 HETATM 17 C C3' GSP . . . F 6 17.083 7.596 25.546 1 36.99 ? C3' GSP 404 C 1 HETATM 18 O O3' GSP . . . F 6 17.156 8.942 26.019 1 35.37 ? O3' GSP 404 C 1 HETATM 19 C C2' GSP . . . F 6 15.816 7.315 24.713 1 39.02 ? C2' GSP 404 C 1 HETATM 20 O O2' GSP . . . F 6 15.159 8.533 24.345 1 48.34 ? O2' GSP 404 C 1 HETATM 21 C C1' GSP . . . F 6 16.364 6.968 23.347 1 38.73 ? C1' GSP 404 C 1 HETATM 22 N N9 GSP . . . F 6 15.681 5.829 22.755 1 35.92 ? N9 GSP 404 C 1 HETATM 23 C C8 GSP . . . F 6 15.751 4.54 23.164 1 28.61 ? C8 GSP 404 C 1 HETATM 24 N N7 GSP . . . F 6 15.102 3.744 22.392 1 30.58 ? N7 GSP 404 C 1 HETATM 25 C C5 GSP . . . F 6 14.557 4.546 21.395 1 30.82 ? C5 GSP 404 C 1 HETATM 26 C C6 GSP . . . F 6 13.759 4.186 20.275 1 27.74 ? C6 GSP 404 C 1 HETATM 27 O O6 GSP . . . F 6 13.505 3.05 19.874 1 26.57 ? O6 GSP 404 C 1 HETATM 28 N N1 GSP . . . F 6 13.406 5.29 19.541 1 24.61 ? N1 GSP 404 C 1 HETATM 29 C C2 GSP . . . F 6 13.788 6.57 19.829 1 30.27 ? C2 GSP 404 C 1 HETATM 30 N N2 GSP . . . F 6 13.372 7.492 18.987 1 23.81 ? N2 GSP 404 C 1 HETATM 31 N N3 GSP . . . F 6 14.558 6.924 20.876 1 33.32 ? N3 GSP 404 C 1 HETATM 32 C C4 GSP . . . F 6 14.902 5.845 21.616 1 32.54 ? C4 GSP 404 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #