data_1AZT
#
_model_server_result.job_id            q4GRl_F0yZFjzg549aG4Kw 
_model_server_result.datetime_utc      '2024-10-18 05:16:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1azt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":411}' 
#
_entry.id    1AZT 
#
_exptl.entry_id    1AZT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.246 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1AZT 
_cell.length_a            88.3 
_cell.length_b            96.5 
_cell.length_c            133.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AZT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 54 A SER 54 1_555 C MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc2 A OG1 THR 204 A THR 204 1_555 C MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc3 C MG MG . A MG 403 1_555 M O2G GSP . A GSP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc4 C MG MG . A MG 403 1_555 M O2B GSP . A GSP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc5 C MG MG . A MG 403 1_555 W O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? 
metalc ? metalc6 B OG SER 54 B SER 54 1_555 Q MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? 
metalc ? metalc7 B OG1 THR 204 B THR 204 1_555 Q MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc8 B OD2 ASP 223 B ASP 223 1_555 Q MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc9 Q MG MG . B MG 406 1_555 V O2B GSP . B GSP 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc10 Q MG MG . B MG 406 1_555 V O2G GSP . B GSP 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc11 Q MG MG . B MG 406 1_555 X O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3 S' 
_chem_comp.formula_weight    539.246 
_chem_comp.id                GSP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O3B GSP sing 129 n n 
PG S1G GSP doub 130 n n 
PG O2G GSP sing 131 n n 
PG O3G GSP sing 132 n n 
O3B PB GSP sing 133 n n 
O2G HOG2 GSP sing 134 n n 
O3G HOG3 GSP sing 135 n n 
PB O1B GSP doub 136 n n 
PB O2B GSP sing 137 n n 
PB O3A GSP sing 138 n n 
O2B HOB2 GSP sing 139 n n 
PA O1A GSP doub 140 n n 
PA O2A GSP sing 141 n n 
PA O3A GSP sing 142 n n 
PA O5' GSP sing 143 n n 
O2A HOA2 GSP sing 144 n n 
O5' C5' GSP sing 145 n n 
C5' C4' GSP sing 146 n n 
C5' "H5'1" GSP sing 147 n n 
C5' "H5'2" GSP sing 148 n n 
C4' O4' GSP sing 149 n n 
C4' C3' GSP sing 150 n n 
C4' H4' GSP sing 151 n n 
O4' C1' GSP sing 152 n n 
C3' O3' GSP sing 153 n n 
C3' C2' GSP sing 154 n n 
C3' H3' GSP sing 155 n n 
O3' HO3' GSP sing 156 n n 
C2' O2' GSP sing 157 n n 
C2' C1' GSP sing 158 n n 
C2' H2' GSP sing 159 n n 
O2' HO2' GSP sing 160 n n 
C1' N9 GSP sing 161 n n 
C1' H1' GSP sing 162 n n 
N9 C8 GSP sing 163 n y 
N9 C4 GSP sing 164 n y 
C8 N7 GSP doub 165 n y 
C8 H8 GSP sing 166 n n 
N7 C5 GSP sing 167 n y 
C5 C6 GSP sing 168 n n 
C5 C4 GSP doub 169 n y 
C6 O6 GSP doub 170 n n 
C6 N1 GSP sing 171 n n 
N1 C2 GSP sing 172 n n 
N1 HN1 GSP sing 173 n n 
C2 N2 GSP sing 174 n n 
C2 N3 GSP doub 175 n n 
N2 HN21 GSP sing 176 n n 
N2 HN22 GSP sing 177 n n 
N3 C4 GSP sing 178 n n 
#
_atom_sites.entry_id                     1AZT 
_atom_sites.fract_transf_matrix[1][1]    0.011325 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 403 396 MG MG . 
D 3 PO4 A 1 404 397 PO4 PO4 . 
E 3 PO4 A 1 405 398 PO4 PO4 . 
F 3 PO4 A 1 406 399 PO4 PO4 . 
G 3 PO4 A 1 407 402 PO4 PO4 . 
H 3 PO4 A 1 408 404 PO4 PO4 . 
I 3 PO4 A 1 409 397 PO4 PO4 . 
J 3 PO4 A 1 410 400 PO4 PO4 . 
K 3 PO4 A 1 411 401 PO4 PO4 . 
L 3 PO4 A 1 412 403 PO4 PO4 . 
M 4 GSP A 1 413 395 GSP GSP . 
N 3 PO4 B 1 403 400 PO4 PO4 . 
O 3 PO4 B 1 404 401 PO4 PO4 . 
P 3 PO4 B 1 405 403 PO4 PO4 . 
Q 2 MG B 1 406 396 MG MG . 
R 3 PO4 B 1 407 398 PO4 PO4 . 
S 3 PO4 B 1 408 399 PO4 PO4 . 
T 3 PO4 B 1 409 402 PO4 PO4 . 
U 3 PO4 B 1 410 404 PO4 PO4 . 
V 4 GSP B 1 411 395 GSP GSP . 
W 5 HOH A 1 414 405 HOH HOH . 
W 5 HOH A 2 415 406 HOH HOH . 
W 5 HOH A 3 416 407 HOH HOH . 
W 5 HOH A 4 417 409 HOH HOH . 
W 5 HOH A 5 418 410 HOH HOH . 
W 5 HOH A 6 419 411 HOH HOH . 
W 5 HOH A 7 420 412 HOH HOH . 
W 5 HOH A 8 421 413 HOH HOH . 
W 5 HOH A 9 422 414 HOH HOH . 
W 5 HOH A 10 423 415 HOH HOH . 
W 5 HOH A 11 424 416 HOH HOH . 
W 5 HOH A 12 425 417 HOH HOH . 
W 5 HOH A 13 426 418 HOH HOH . 
W 5 HOH A 14 427 419 HOH HOH . 
W 5 HOH A 15 428 420 HOH HOH . 
W 5 HOH A 16 429 421 HOH HOH . 
W 5 HOH A 17 430 422 HOH HOH . 
W 5 HOH A 18 431 423 HOH HOH . 
W 5 HOH A 19 432 424 HOH HOH . 
W 5 HOH A 20 433 425 HOH HOH . 
W 5 HOH A 21 434 427 HOH HOH . 
W 5 HOH A 22 435 428 HOH HOH . 
W 5 HOH A 23 436 429 HOH HOH . 
W 5 HOH A 24 437 430 HOH HOH . 
W 5 HOH A 25 438 431 HOH HOH . 
W 5 HOH A 26 439 405 HOH HOH . 
W 5 HOH A 27 440 408 HOH HOH . 
W 5 HOH A 28 441 426 HOH HOH . 
X 5 HOH B 1 412 426 HOH HOH . 
X 5 HOH B 2 413 406 HOH HOH . 
X 5 HOH B 3 414 407 HOH HOH . 
X 5 HOH B 4 415 409 HOH HOH . 
X 5 HOH B 5 416 410 HOH HOH . 
X 5 HOH B 6 417 411 HOH HOH . 
X 5 HOH B 7 418 412 HOH HOH . 
X 5 HOH B 8 419 413 HOH HOH . 
X 5 HOH B 9 420 414 HOH HOH . 
X 5 HOH B 10 421 415 HOH HOH . 
X 5 HOH B 11 422 416 HOH HOH . 
X 5 HOH B 12 423 417 HOH HOH . 
X 5 HOH B 13 424 418 HOH HOH . 
X 5 HOH B 14 425 419 HOH HOH . 
X 5 HOH B 15 426 420 HOH HOH . 
X 5 HOH B 16 427 421 HOH HOH . 
X 5 HOH B 17 428 422 HOH HOH . 
X 5 HOH B 18 429 423 HOH HOH . 
X 5 HOH B 19 430 424 HOH HOH . 
X 5 HOH B 20 431 425 HOH HOH . 
X 5 HOH B 21 432 427 HOH HOH . 
X 5 HOH B 22 433 428 HOH HOH . 
X 5 HOH B 23 434 429 HOH HOH . 
X 5 HOH B 24 435 430 HOH HOH . 
X 5 HOH B 25 436 431 HOH HOH . 
X 5 HOH B 26 437 432 HOH HOH . 
X 5 HOH B 27 438 433 HOH HOH . 
X 5 HOH B 28 439 434 HOH HOH . 
X 5 HOH B 29 440 435 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GSP . . . V 4 15.816 24.595 -9.828 1 29.17 ? PG GSP 411 B 1 
HETATM 2 O O3B GSP . . . V 4 15.629 25.775 -8.662 1 16.02 ? O3B GSP 411 B 1 
HETATM 3 S S1G GSP . . . V 4 15.275 25.469 -11.416 1 23.58 ? S1G GSP 411 B 1 
HETATM 4 O O2G GSP . . . V 4 17.239 24.134 -9.777 1 28.29 ? O2G GSP 411 B 1 
HETATM 5 O O3G GSP . . . V 4 14.825 23.561 -9.444 1 27.56 ? O3G GSP 411 B 1 
HETATM 6 P PB GSP . . . V 4 16.324 25.847 -7.248 1 6.62 ? PB GSP 411 B 1 
HETATM 7 O O1B GSP . . . V 4 15.398 25.246 -6.275 1 10.84 ? O1B GSP 411 B 1 
HETATM 8 O O2B GSP . . . V 4 17.655 25.221 -7.339 1 13.55 ? O2B GSP 411 B 1 
HETATM 9 P PA GSP . . . V 4 17.903 28.157 -6.438 1 4.37 ? PA GSP 411 B 1 
HETATM 10 O O1A GSP . . . V 4 18.268 27.689 -5.087 1 11.49 ? O1A GSP 411 B 1 
HETATM 11 O O2A GSP . . . V 4 18.815 27.894 -7.604 1 16.03 ? O2A GSP 411 B 1 
HETATM 12 O O3A GSP . . . V 4 16.436 27.411 -6.888 1 13 ? O3A GSP 411 B 1 
HETATM 13 O O5' GSP . . . V 4 17.725 29.711 -6.318 1 12.87 ? O5' GSP 411 B 1 
HETATM 14 C C5' GSP . . . V 4 16.816 30.379 -7.153 1 14.66 ? C5' GSP 411 B 1 
HETATM 15 C C4' GSP . . . V 4 16.781 31.891 -6.782 1 12.66 ? C4' GSP 411 B 1 
HETATM 16 O O4' GSP . . . V 4 16.113 32.264 -5.55 1 9.36 ? O4' GSP 411 B 1 
HETATM 17 C C3' GSP . . . V 4 18.19 32.419 -6.658 1 5.89 ? C3' GSP 411 B 1 
HETATM 18 O O3' GSP . . . V 4 18.181 33.732 -7.116 1 10.32 ? O3' GSP 411 B 1 
HETATM 19 C C2' GSP . . . V 4 18.365 32.444 -5.182 1 6.29 ? C2' GSP 411 B 1 
HETATM 20 O O2' GSP . . . V 4 19.297 33.448 -4.898 1 14.64 ? O2' GSP 411 B 1 
HETATM 21 C C1' GSP . . . V 4 17.067 32.919 -4.681 1 5.94 ? C1' GSP 411 B 1 
HETATM 22 N N9 GSP . . . V 4 16.81 32.539 -3.266 1 4.74 ? N9 GSP 411 B 1 
HETATM 23 C C8 GSP . . . V 4 16.733 31.278 -2.721 1 2.28 ? C8 GSP 411 B 1 
HETATM 24 N N7 GSP . . . V 4 16.324 31.277 -1.492 1 6.86 ? N7 GSP 411 B 1 
HETATM 25 C C5 GSP . . . V 4 16.116 32.612 -1.167 1 6.7 ? C5 GSP 411 B 1 
HETATM 26 C C6 GSP . . . V 4 15.683 33.208 0.063 1 12.31 ? C6 GSP 411 B 1 
HETATM 27 O O6 GSP . . . V 4 15.289 32.657 1.094 1 14.03 ? O6 GSP 411 B 1 
HETATM 28 N N1 GSP . . . V 4 15.668 34.586 -0.04 1 8.57 ? N1 GSP 411 B 1 
HETATM 29 C C2 GSP . . . V 4 16.006 35.284 -1.162 1 3.75 ? C2 GSP 411 B 1 
HETATM 30 N N2 GSP . . . V 4 16.113 36.604 -1.071 1 2 ? N2 GSP 411 B 1 
HETATM 31 N N3 GSP . . . V 4 16.377 34.718 -2.321 1 5 ? N3 GSP 411 B 1 
HETATM 32 C C4 GSP . . . V 4 16.419 33.385 -2.244 1 2.87 ? C4 GSP 411 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#