data_1AZX # _model_server_result.job_id zxLwrM15vU1HfWa7zxZt5A _model_server_result.datetime_utc '2024-11-25 09:53:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1azx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 1AZX # _exptl.entry_id 1AZX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.88 _cell.angle_gamma 90 _cell.entry_id 1AZX _cell.length_a 70.44 _cell.length_b 86.97 _cell.length_c 97.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AZX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,F,G 1 1 A,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 Z9K Z9L C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GU6 Z9K C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GU1 GU6 C1 O1 . O4 HO4 . sing 4 ? 2 5 4 Z9H GU1 C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C Z9L 1 A 1 Z9L I 1 NTP 2 n C Z9K 2 A 2 Z9K I 1 NTP 2 n C GU6 3 A 3 GU6 I 1 NTP 2 n C GU1 4 A 4 GU1 I 1 NTP 2 n C Z9H 5 A 5 Z9H I 1 NTP 2 n D Z9L 1 B 1 Z9L L 1 NTP 2 n D Z9K 2 B 2 Z9K L 1 NTP 2 n D GU6 3 B 3 GU6 L 1 NTP 2 n D GU1 4 B 4 GU1 L 1 NTP 2 n D Z9H 5 B 5 Z9H L 1 NTP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 I CYS 8 1_555 A SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 21 I CYS 21 1_555 A SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 247 I CYS 247 1_555 A SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 8 L CYS 8 1_555 B SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? disulf ? disulf5 B SG CYS 21 L CYS 21 1_555 B SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? disulf ? disulf6 B SG CYS 247 L CYS 247 1_555 B SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? covale ? covale1 A ND2 ASN 155 I ASN 155 1_555 E C1 NAG . I NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 B ND2 ASN 155 L ASN 155 1_555 F C1 NAG . L NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 B ND2 ASN 192 L ASN 192 1_555 G C1 NAG . L NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 C O4 Z9L . A Z9L 1 1_555 C C1 Z9K . A Z9K 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 sing covale ? covale5 C O4 Z9K . A Z9K 2 1_555 C C1 GU6 . A GU6 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing covale ? covale6 C O4 GU6 . A GU6 3 1_555 C C1 GU1 . A GU1 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 sing covale ? covale7 C O4 GU1 . A GU1 4 1_555 C C1 Z9H . A Z9H 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing covale ? covale8 D O4 Z9L . B Z9L 1 1_555 D C1 Z9K . B Z9K 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 sing covale ? covale9 D O4 Z9K . B Z9K 2 1_555 D C1 GU6 . B GU6 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 sing covale ? covale10 D O4 GU6 . B GU6 3 1_555 D C1 GU1 . B GU1 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing covale ? covale11 D O4 GU1 . B GU1 4 1_555 D C1 Z9H . B Z9H 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 300 n n C1 O1 NAG sing 301 n n C1 O5 NAG sing 302 n n C1 H1 NAG sing 303 n n C2 C3 NAG sing 304 n n C2 N2 NAG sing 305 n n C2 H2 NAG sing 306 n n C3 C4 NAG sing 307 n n C3 O3 NAG sing 308 n n C3 H3 NAG sing 309 n n C4 C5 NAG sing 310 n n C4 O4 NAG sing 311 n n C4 H4 NAG sing 312 n n C5 C6 NAG sing 313 n n C5 O5 NAG sing 314 n n C5 H5 NAG sing 315 n n C6 O6 NAG sing 316 n n C6 H61 NAG sing 317 n n C6 H62 NAG sing 318 n n C7 C8 NAG sing 319 n n C7 N2 NAG sing 320 n n C7 O7 NAG doub 321 n n C8 H81 NAG sing 322 n n C8 H82 NAG sing 323 n n C8 H83 NAG sing 324 n n N2 HN2 NAG sing 325 n n O1 HO1 NAG sing 326 n n O3 HO3 NAG sing 327 n n O4 HO4 NAG sing 328 n n O6 HO6 NAG sing 329 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1AZX _atom_sites.fract_transf_matrix[1][1] 0.014196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004855 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG I 1 501 501 NAG NAG . F 3 NAG L 1 501 501 NAG NAG . G 3 NAG L 1 502 502 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 3 14.388 -0.415 34.09 1 77.99 ? C1 NAG 502 L 1 HETATM 2 C C2 NAG . . . G 3 15.881 -0.145 33.808 1 78.33 ? C2 NAG 502 L 1 HETATM 3 C C3 NAG . . . G 3 16.724 -1.405 34.077 1 74.94 ? C3 NAG 502 L 1 HETATM 4 C C4 NAG . . . G 3 16.431 -2.075 35.442 1 82.91 ? C4 NAG 502 L 1 HETATM 5 C C5 NAG . . . G 3 14.914 -2.074 35.795 1 73.54 ? C5 NAG 502 L 1 HETATM 6 C C6 NAG . . . G 3 14.624 -2.42 37.266 1 30 ? C6 NAG 502 L 1 HETATM 7 C C7 NAG . . . G 3 16.212 1.569 32.048 1 51.79 ? C7 NAG 502 L 1 HETATM 8 C C8 NAG . . . G 3 16.276 2.657 33.117 1 42.01 ? C8 NAG 502 L 1 HETATM 9 N N2 NAG . . . G 3 16.057 0.294 32.42 1 48.39 ? N2 NAG 502 L 1 HETATM 10 O O3 NAG . . . G 3 18.124 -1.107 33.959 1 30 ? O3 NAG 502 L 1 HETATM 11 O O4 NAG . . . G 3 16.83 -3.439 35.235 1 73.33 ? O4 NAG 502 L 1 HETATM 12 O O5 NAG . . . G 3 14.311 -0.815 35.465 1 64.45 ? O5 NAG 502 L 1 HETATM 13 O O6 NAG . . . G 3 13.224 -2.68 37.434 1 60 ? O6 NAG 502 L 1 HETATM 14 O O7 NAG . . . G 3 16.281 1.913 30.873 1 48.06 ? O7 NAG 502 L 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #