data_1B02 # _model_server_result.job_id -AaRidgOyi5f2SV5I159DQ _model_server_result.datetime_utc '2024-11-21 22:29:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":280}' # _entry.id 1B02 # _exptl.entry_id 1B02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.172 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B02 _cell.length_a 55.57 _cell.length_b 105.01 _cell.length_c 117.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 161 A CYS 161 1_555 B C6 UFP . A UFP 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? covale ? covale2 B C5 UFP . A UFP 280 1_555 C C11 C2F . A C2F 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? # _chem_comp.formula 'C9 H12 F N2 O8 P' _chem_comp.formula_weight 326.172 _chem_comp.id UFP _chem_comp.mon_nstd_flag . _chem_comp.name "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UFP sing 418 n n N1 C6 UFP sing 419 n n N1 C1' UFP sing 420 n n C2 N3 UFP sing 421 n n C2 O2 UFP doub 422 n n N3 C4 UFP sing 423 n n N3 HN3 UFP sing 424 n n C4 C5 UFP sing 425 n n C4 O4 UFP doub 426 n n C5 C6 UFP doub 427 n n C5 F5 UFP sing 428 n n C6 H6 UFP sing 429 n n C1' C2' UFP sing 430 n n C1' O4' UFP sing 431 n n C1' H1' UFP sing 432 n n C2' C3' UFP sing 433 n n C2' "H2'1" UFP sing 434 n n C2' "H2'2" UFP sing 435 n n C3' C4' UFP sing 436 n n C3' O3' UFP sing 437 n n C3' H3' UFP sing 438 n n C4' O4' UFP sing 439 n n C4' C5' UFP sing 440 n n C4' H4' UFP sing 441 n n O3' HO3' UFP sing 442 n n C5' O5' UFP sing 443 n n C5' "H5'1" UFP sing 444 n n C5' "H5'2" UFP sing 445 n n O5' P UFP sing 446 n n P O1P UFP doub 447 n n P O2P UFP sing 448 n n P O3P UFP sing 449 n n O2P HOP2 UFP sing 450 n n O3P HOP3 UFP sing 451 n n # _atom_sites.entry_id 1B02 _atom_sites.fract_transf_matrix[1][1] 0.017995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UFP A 1 280 280 UFP UFP . C 3 C2F A 1 281 281 C2F C2F . D 4 HOH A 1 282 282 HOH HOH . D 4 HOH A 2 283 283 HOH HOH . D 4 HOH A 3 284 284 HOH HOH . D 4 HOH A 4 285 285 HOH HOH . D 4 HOH A 5 286 286 HOH HOH . D 4 HOH A 6 287 287 HOH HOH . D 4 HOH A 7 288 288 HOH HOH . D 4 HOH A 8 289 289 HOH HOH . D 4 HOH A 9 290 290 HOH HOH . D 4 HOH A 10 291 291 HOH HOH . D 4 HOH A 11 292 292 HOH HOH . D 4 HOH A 12 293 293 HOH HOH . D 4 HOH A 13 294 294 HOH HOH . D 4 HOH A 14 295 295 HOH HOH . D 4 HOH A 15 296 296 HOH HOH . D 4 HOH A 16 297 297 HOH HOH . D 4 HOH A 17 298 298 HOH HOH . D 4 HOH A 18 299 299 HOH HOH . D 4 HOH A 19 300 300 HOH HOH . D 4 HOH A 20 301 301 HOH HOH . D 4 HOH A 21 302 302 HOH HOH . D 4 HOH A 22 303 303 HOH HOH . D 4 HOH A 23 304 304 HOH HOH . D 4 HOH A 24 305 305 HOH HOH . D 4 HOH A 25 306 306 HOH HOH . D 4 HOH A 26 307 307 HOH HOH . D 4 HOH A 27 308 308 HOH HOH . D 4 HOH A 28 309 309 HOH HOH . D 4 HOH A 29 310 310 HOH HOH . D 4 HOH A 30 311 311 HOH HOH . D 4 HOH A 31 312 312 HOH HOH . D 4 HOH A 32 313 313 HOH HOH . D 4 HOH A 33 314 314 HOH HOH . D 4 HOH A 34 315 315 HOH HOH . D 4 HOH A 35 316 316 HOH HOH . D 4 HOH A 36 317 317 HOH HOH . D 4 HOH A 37 318 318 HOH HOH . D 4 HOH A 38 319 319 HOH HOH . D 4 HOH A 39 320 320 HOH HOH . D 4 HOH A 40 321 321 HOH HOH . D 4 HOH A 41 322 322 HOH HOH . D 4 HOH A 42 323 323 HOH HOH . D 4 HOH A 43 324 324 HOH HOH . D 4 HOH A 44 325 325 HOH HOH . D 4 HOH A 45 326 326 HOH HOH . D 4 HOH A 46 327 327 HOH HOH . D 4 HOH A 47 328 328 HOH HOH . D 4 HOH A 48 329 329 HOH HOH . D 4 HOH A 49 330 330 HOH HOH . D 4 HOH A 50 331 331 HOH HOH . D 4 HOH A 51 332 332 HOH HOH . D 4 HOH A 52 333 333 HOH HOH . D 4 HOH A 53 334 334 HOH HOH . D 4 HOH A 54 335 335 HOH HOH . D 4 HOH A 55 336 336 HOH HOH . D 4 HOH A 56 337 337 HOH HOH . D 4 HOH A 57 338 338 HOH HOH . D 4 HOH A 58 339 339 HOH HOH . D 4 HOH A 59 340 340 HOH HOH . D 4 HOH A 60 341 341 HOH HOH . D 4 HOH A 61 342 342 HOH HOH . D 4 HOH A 62 343 343 HOH HOH . D 4 HOH A 63 344 344 HOH HOH . D 4 HOH A 64 345 345 HOH HOH . D 4 HOH A 65 346 346 HOH HOH . D 4 HOH A 66 347 347 HOH HOH . D 4 HOH A 67 348 348 HOH HOH . D 4 HOH A 68 349 349 HOH HOH . D 4 HOH A 69 350 350 HOH HOH . D 4 HOH A 70 351 351 HOH HOH . D 4 HOH A 71 352 352 HOH HOH . D 4 HOH A 72 353 353 HOH HOH . D 4 HOH A 73 354 354 HOH HOH . D 4 HOH A 74 355 355 HOH HOH . D 4 HOH A 75 356 356 HOH HOH . D 4 HOH A 76 357 357 HOH HOH . D 4 HOH A 77 358 358 HOH HOH . D 4 HOH A 78 359 359 HOH HOH . D 4 HOH A 79 360 360 HOH HOH . D 4 HOH A 80 361 361 HOH HOH . D 4 HOH A 81 362 362 HOH HOH . D 4 HOH A 82 363 363 HOH HOH . D 4 HOH A 83 364 364 HOH HOH . D 4 HOH A 84 365 365 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UFP . . . B 2 -5.903 48.048 8.011 1 14.07 ? N1 UFP 280 A 1 HETATM 2 C C2 UFP . . . B 2 -5.13 46.876 8.195 1 16.71 ? C2 UFP 280 A 1 HETATM 3 N N3 UFP . . . B 2 -3.759 46.827 7.786 1 16.68 ? N3 UFP 280 A 1 HETATM 4 C C4 UFP . . . B 2 -3.064 47.85 7.031 1 14.92 ? C4 UFP 280 A 1 HETATM 5 C C5 UFP . . . B 2 -3.912 49.097 6.366 1 14.1 ? C5 UFP 280 A 1 HETATM 6 C C6 UFP . . . B 2 -5.135 49.379 7.486 1 17.98 ? C6 UFP 280 A 1 HETATM 7 O O2 UFP . . . B 2 -5.623 45.774 8.46 1 11.45 ? O2 UFP 280 A 1 HETATM 8 O O4 UFP . . . B 2 -1.826 47.905 6.979 1 27.15 ? O4 UFP 280 A 1 HETATM 9 F F5 UFP . . . B 2 -3.203 50.18 6.092 1 24.76 ? F5 UFP 280 A 1 HETATM 10 C C1' UFP . . . B 2 -7.379 48.124 8.278 1 14.89 ? C1' UFP 280 A 1 HETATM 11 C C2' UFP . . . B 2 -7.838 48.046 9.721 1 18.61 ? C2' UFP 280 A 1 HETATM 12 C C3' UFP . . . B 2 -9.178 48.754 9.553 1 16.71 ? C3' UFP 280 A 1 HETATM 13 C C4' UFP . . . B 2 -9.012 49.779 8.473 1 13.96 ? C4' UFP 280 A 1 HETATM 14 O O3' UFP . . . B 2 -10.154 47.799 9.183 1 18.74 ? O3' UFP 280 A 1 HETATM 15 O O4' UFP . . . B 2 -7.961 49.292 7.649 1 16.4 ? O4' UFP 280 A 1 HETATM 16 C C5' UFP . . . B 2 -8.662 51.251 8.797 1 13.29 ? C5' UFP 280 A 1 HETATM 17 O O5' UFP . . . B 2 -9.811 51.817 9.504 1 27.74 ? O5' UFP 280 A 1 HETATM 18 P P UFP . . . B 2 -9.596 52.462 10.929 1 21.26 ? P UFP 280 A 1 HETATM 19 O O1P UFP . . . B 2 -8.722 53.633 10.743 1 11.2 ? O1P UFP 280 A 1 HETATM 20 O O2P UFP . . . B 2 -9.176 51.429 11.85 1 18.32 ? O2P UFP 280 A 1 HETATM 21 O O3P UFP . . . B 2 -11.114 52.766 11.278 1 20.43 ? O3P UFP 280 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #