data_1B02
#
_model_server_result.job_id            OKbH6aVs-PGjf5S3Q6rvjQ 
_model_server_result.datetime_utc      '2024-11-14 09:28:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1b02 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":280}' 
#
_entry.id    1B02 
#
_exptl.entry_id    1B02 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              326.172 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1B02 
_cell.length_a            55.57 
_cell.length_b            105.01 
_cell.length_c            117.26 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1B02 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 161 A CYS 161 1_555 B C6 UFP . A UFP 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? 
covale ? covale2 B C5 UFP . A UFP 280 1_555 C C11 C2F . A C2F 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? 
#
_chem_comp.formula           'C9 H12 F N2 O8 P' 
_chem_comp.formula_weight    326.172 
_chem_comp.id                UFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UFP sing 418 n n 
N1 C6 UFP sing 419 n n 
N1 C1' UFP sing 420 n n 
C2 N3 UFP sing 421 n n 
C2 O2 UFP doub 422 n n 
N3 C4 UFP sing 423 n n 
N3 HN3 UFP sing 424 n n 
C4 C5 UFP sing 425 n n 
C4 O4 UFP doub 426 n n 
C5 C6 UFP doub 427 n n 
C5 F5 UFP sing 428 n n 
C6 H6 UFP sing 429 n n 
C1' C2' UFP sing 430 n n 
C1' O4' UFP sing 431 n n 
C1' H1' UFP sing 432 n n 
C2' C3' UFP sing 433 n n 
C2' "H2'1" UFP sing 434 n n 
C2' "H2'2" UFP sing 435 n n 
C3' C4' UFP sing 436 n n 
C3' O3' UFP sing 437 n n 
C3' H3' UFP sing 438 n n 
C4' O4' UFP sing 439 n n 
C4' C5' UFP sing 440 n n 
C4' H4' UFP sing 441 n n 
O3' HO3' UFP sing 442 n n 
C5' O5' UFP sing 443 n n 
C5' "H5'1" UFP sing 444 n n 
C5' "H5'2" UFP sing 445 n n 
O5' P UFP sing 446 n n 
P O1P UFP doub 447 n n 
P O2P UFP sing 448 n n 
P O3P UFP sing 449 n n 
O2P HOP2 UFP sing 450 n n 
O3P HOP3 UFP sing 451 n n 
#
_atom_sites.entry_id                     1B02 
_atom_sites.fract_transf_matrix[1][1]    0.017995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009523 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UFP A 1 280 280 UFP UFP . 
C 3 C2F A 1 281 281 C2F C2F . 
D 4 HOH A 1 282 282 HOH HOH . 
D 4 HOH A 2 283 283 HOH HOH . 
D 4 HOH A 3 284 284 HOH HOH . 
D 4 HOH A 4 285 285 HOH HOH . 
D 4 HOH A 5 286 286 HOH HOH . 
D 4 HOH A 6 287 287 HOH HOH . 
D 4 HOH A 7 288 288 HOH HOH . 
D 4 HOH A 8 289 289 HOH HOH . 
D 4 HOH A 9 290 290 HOH HOH . 
D 4 HOH A 10 291 291 HOH HOH . 
D 4 HOH A 11 292 292 HOH HOH . 
D 4 HOH A 12 293 293 HOH HOH . 
D 4 HOH A 13 294 294 HOH HOH . 
D 4 HOH A 14 295 295 HOH HOH . 
D 4 HOH A 15 296 296 HOH HOH . 
D 4 HOH A 16 297 297 HOH HOH . 
D 4 HOH A 17 298 298 HOH HOH . 
D 4 HOH A 18 299 299 HOH HOH . 
D 4 HOH A 19 300 300 HOH HOH . 
D 4 HOH A 20 301 301 HOH HOH . 
D 4 HOH A 21 302 302 HOH HOH . 
D 4 HOH A 22 303 303 HOH HOH . 
D 4 HOH A 23 304 304 HOH HOH . 
D 4 HOH A 24 305 305 HOH HOH . 
D 4 HOH A 25 306 306 HOH HOH . 
D 4 HOH A 26 307 307 HOH HOH . 
D 4 HOH A 27 308 308 HOH HOH . 
D 4 HOH A 28 309 309 HOH HOH . 
D 4 HOH A 29 310 310 HOH HOH . 
D 4 HOH A 30 311 311 HOH HOH . 
D 4 HOH A 31 312 312 HOH HOH . 
D 4 HOH A 32 313 313 HOH HOH . 
D 4 HOH A 33 314 314 HOH HOH . 
D 4 HOH A 34 315 315 HOH HOH . 
D 4 HOH A 35 316 316 HOH HOH . 
D 4 HOH A 36 317 317 HOH HOH . 
D 4 HOH A 37 318 318 HOH HOH . 
D 4 HOH A 38 319 319 HOH HOH . 
D 4 HOH A 39 320 320 HOH HOH . 
D 4 HOH A 40 321 321 HOH HOH . 
D 4 HOH A 41 322 322 HOH HOH . 
D 4 HOH A 42 323 323 HOH HOH . 
D 4 HOH A 43 324 324 HOH HOH . 
D 4 HOH A 44 325 325 HOH HOH . 
D 4 HOH A 45 326 326 HOH HOH . 
D 4 HOH A 46 327 327 HOH HOH . 
D 4 HOH A 47 328 328 HOH HOH . 
D 4 HOH A 48 329 329 HOH HOH . 
D 4 HOH A 49 330 330 HOH HOH . 
D 4 HOH A 50 331 331 HOH HOH . 
D 4 HOH A 51 332 332 HOH HOH . 
D 4 HOH A 52 333 333 HOH HOH . 
D 4 HOH A 53 334 334 HOH HOH . 
D 4 HOH A 54 335 335 HOH HOH . 
D 4 HOH A 55 336 336 HOH HOH . 
D 4 HOH A 56 337 337 HOH HOH . 
D 4 HOH A 57 338 338 HOH HOH . 
D 4 HOH A 58 339 339 HOH HOH . 
D 4 HOH A 59 340 340 HOH HOH . 
D 4 HOH A 60 341 341 HOH HOH . 
D 4 HOH A 61 342 342 HOH HOH . 
D 4 HOH A 62 343 343 HOH HOH . 
D 4 HOH A 63 344 344 HOH HOH . 
D 4 HOH A 64 345 345 HOH HOH . 
D 4 HOH A 65 346 346 HOH HOH . 
D 4 HOH A 66 347 347 HOH HOH . 
D 4 HOH A 67 348 348 HOH HOH . 
D 4 HOH A 68 349 349 HOH HOH . 
D 4 HOH A 69 350 350 HOH HOH . 
D 4 HOH A 70 351 351 HOH HOH . 
D 4 HOH A 71 352 352 HOH HOH . 
D 4 HOH A 72 353 353 HOH HOH . 
D 4 HOH A 73 354 354 HOH HOH . 
D 4 HOH A 74 355 355 HOH HOH . 
D 4 HOH A 75 356 356 HOH HOH . 
D 4 HOH A 76 357 357 HOH HOH . 
D 4 HOH A 77 358 358 HOH HOH . 
D 4 HOH A 78 359 359 HOH HOH . 
D 4 HOH A 79 360 360 HOH HOH . 
D 4 HOH A 80 361 361 HOH HOH . 
D 4 HOH A 81 362 362 HOH HOH . 
D 4 HOH A 82 363 363 HOH HOH . 
D 4 HOH A 83 364 364 HOH HOH . 
D 4 HOH A 84 365 365 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UFP . . . B 2 -5.903 48.048 8.011 1 14.07 ? N1 UFP 280 A 1 
HETATM 2 C C2 UFP . . . B 2 -5.13 46.876 8.195 1 16.71 ? C2 UFP 280 A 1 
HETATM 3 N N3 UFP . . . B 2 -3.759 46.827 7.786 1 16.68 ? N3 UFP 280 A 1 
HETATM 4 C C4 UFP . . . B 2 -3.064 47.85 7.031 1 14.92 ? C4 UFP 280 A 1 
HETATM 5 C C5 UFP . . . B 2 -3.912 49.097 6.366 1 14.1 ? C5 UFP 280 A 1 
HETATM 6 C C6 UFP . . . B 2 -5.135 49.379 7.486 1 17.98 ? C6 UFP 280 A 1 
HETATM 7 O O2 UFP . . . B 2 -5.623 45.774 8.46 1 11.45 ? O2 UFP 280 A 1 
HETATM 8 O O4 UFP . . . B 2 -1.826 47.905 6.979 1 27.15 ? O4 UFP 280 A 1 
HETATM 9 F F5 UFP . . . B 2 -3.203 50.18 6.092 1 24.76 ? F5 UFP 280 A 1 
HETATM 10 C C1' UFP . . . B 2 -7.379 48.124 8.278 1 14.89 ? C1' UFP 280 A 1 
HETATM 11 C C2' UFP . . . B 2 -7.838 48.046 9.721 1 18.61 ? C2' UFP 280 A 1 
HETATM 12 C C3' UFP . . . B 2 -9.178 48.754 9.553 1 16.71 ? C3' UFP 280 A 1 
HETATM 13 C C4' UFP . . . B 2 -9.012 49.779 8.473 1 13.96 ? C4' UFP 280 A 1 
HETATM 14 O O3' UFP . . . B 2 -10.154 47.799 9.183 1 18.74 ? O3' UFP 280 A 1 
HETATM 15 O O4' UFP . . . B 2 -7.961 49.292 7.649 1 16.4 ? O4' UFP 280 A 1 
HETATM 16 C C5' UFP . . . B 2 -8.662 51.251 8.797 1 13.29 ? C5' UFP 280 A 1 
HETATM 17 O O5' UFP . . . B 2 -9.811 51.817 9.504 1 27.74 ? O5' UFP 280 A 1 
HETATM 18 P P UFP . . . B 2 -9.596 52.462 10.929 1 21.26 ? P UFP 280 A 1 
HETATM 19 O O1P UFP . . . B 2 -8.722 53.633 10.743 1 11.2 ? O1P UFP 280 A 1 
HETATM 20 O O2P UFP . . . B 2 -9.176 51.429 11.85 1 18.32 ? O2P UFP 280 A 1 
HETATM 21 O O3P UFP . . . B 2 -11.114 52.766 11.278 1 20.43 ? O3P UFP 280 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#