data_1B0F # _model_server_result.job_id '_oBUrw6QBTIz979p-bqkjw' _model_server_result.datetime_utc '2025-02-27 01:48:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 1B0F # _exptl.entry_id 1B0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 632.619 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-{3-METHYL-2-[4-(MORPHOLINE-4-CARBONYL)-BENZOYLAMINO]-BUTYRYL}-PYRROLIDINE-2-CARBOXYLIC ACID (3,3,4,4,4-PENTAFLUORO-1-ISOPROPYL-2-OXO-BUTYL)-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B0F _cell.length_a 75.8 _cell.length_b 75.8 _cell.length_c 108.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 401 NAG 2 n B NAG 2 B 2 NAG B 403 NAG 2 n B FUC 3 B 3 FUC B 402 FUC 2 n C NAG 1 C 1 NAG C 411 NAG 2 n C NAG 2 C 2 NAG C 413 NAG 2 n C FUC 3 C 3 FUC C 412 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 179 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 152 A CYS 168 1_555 A SG CYS 158 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 169 A CYS 191 1_555 A SG CYS 194 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A ND2 ASN 95 A ASN 109 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 144 A ASN 159 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 A OG SER 173 A SER 195 1_555 D C71 SEI . A SEI 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale5 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale7 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? # _chem_comp.formula 'C29 H37 F5 N4 O6' _chem_comp.formula_weight 632.619 _chem_comp.id SEI _chem_comp.mon_nstd_flag . _chem_comp.name '1-{3-METHYL-2-[4-(MORPHOLINE-4-CARBONYL)-BENZOYLAMINO]-BUTYRYL}-PYRROLIDINE-2-CARBOXYLIC ACID (3,3,4,4,4-PENTAFLUORO-1-ISOPROPYL-2-OXO-BUTYL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MDL 101,146' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 SEI sing 306 n n C2 O1 SEI sing 307 n n C2 H21 SEI sing 308 n n C2 H22 SEI sing 309 n n C3 N4 SEI sing 310 n n C3 H31 SEI sing 311 n n C3 H32 SEI sing 312 n n C15 C22 SEI sing 313 n n C15 N4 SEI sing 314 n n C15 O16 SEI doub 315 n n C19 C20 SEI doub 316 n y C19 C27 SEI sing 317 n n C19 C18 SEI sing 318 n y C20 C21 SEI sing 319 n y C20 H201 SEI sing 320 n n C21 C22 SEI doub 321 n y C21 H211 SEI sing 322 n n C22 C17 SEI sing 323 n y C27 N28 SEI sing 324 n n C27 O81 SEI doub 325 n n C30 C31 SEI sing 326 n n C30 C35 SEI sing 327 n n C30 C29 SEI sing 328 n n C30 H301 SEI sing 329 n n C31 H311 SEI sing 330 n n C31 H312 SEI sing 331 n n C31 H313 SEI sing 332 n n C35 H351 SEI sing 333 n n C35 H352 SEI sing 334 n n C35 H353 SEI sing 335 n n O1 C6 SEI sing 336 n n N4 C5 SEI sing 337 n n C5 C6 SEI sing 338 n n C5 H51 SEI sing 339 n n C5 H52 SEI sing 340 n n C6 H61 SEI sing 341 n n C6 H62 SEI sing 342 n n C17 C18 SEI doub 343 n y C17 H171 SEI sing 344 n n C18 H182 SEI sing 345 n n N28 C29 SEI sing 346 n n N28 H281 SEI sing 347 n n C29 C40 SEI sing 348 n n C29 H291 SEI sing 349 n n C40 O42 SEI doub 350 n n C40 N54 SEI sing 351 n n C44 C47 SEI sing 352 n n C44 C52 SEI sing 353 n n C44 N54 SEI sing 354 n n C44 H441 SEI sing 355 n n C45 C46 SEI sing 356 n n C45 N54 SEI sing 357 n n C45 H451 SEI sing 358 n n C45 H452 SEI sing 359 n n C46 C47 SEI sing 360 n n C46 H461 SEI sing 361 n n C46 H462 SEI sing 362 n n C47 H471 SEI sing 363 n n C47 H472 SEI sing 364 n n C52 N53 SEI sing 365 n n C52 O58 SEI doub 366 n n N53 C59 SEI sing 367 n n N53 H531 SEI sing 368 n n C59 C61 SEI sing 369 n n C59 C71 SEI sing 370 n n C59 H591 SEI sing 371 n n C61 C62 SEI sing 372 n n C61 C66 SEI sing 373 n n C61 H611 SEI sing 374 n n C62 H621 SEI sing 375 n n C62 H622 SEI sing 376 n n C62 H623 SEI sing 377 n n C66 H661 SEI sing 378 n n C66 H662 SEI sing 379 n n C66 H663 SEI sing 380 n n C71 C73 SEI sing 381 n n C71 O74 SEI doub 382 n n C73 F75 SEI sing 383 n n C73 F76 SEI sing 384 n n C73 C77 SEI sing 385 n n C77 F78 SEI sing 386 n n C77 F79 SEI sing 387 n n C77 F80 SEI sing 388 n n # _atom_sites.entry_id 1B0F _atom_sites.fract_transf_matrix[1][1] 0.013193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SEI A 1 300 300 SEI SEI . E 4 HOH A 1 1 1 HOH HOH . E 4 HOH A 2 2 2 HOH HOH . E 4 HOH A 3 3 3 HOH HOH . E 4 HOH A 4 4 4 HOH HOH . E 4 HOH A 5 5 5 HOH HOH . E 4 HOH A 6 6 6 HOH HOH . E 4 HOH A 7 7 7 HOH HOH . E 4 HOH A 8 8 8 HOH HOH . E 4 HOH A 9 9 9 HOH HOH . E 4 HOH A 10 10 10 HOH HOH . E 4 HOH A 11 11 11 HOH HOH . E 4 HOH A 12 12 12 HOH HOH . E 4 HOH A 13 13 13 HOH HOH . E 4 HOH A 14 14 14 HOH HOH . E 4 HOH A 15 15 15 HOH HOH . E 4 HOH A 16 414 414 HOH HOH . E 4 HOH A 17 415 415 HOH HOH . E 4 HOH A 18 416 416 HOH HOH . E 4 HOH A 19 417 417 HOH HOH . E 4 HOH A 20 418 418 HOH HOH . E 4 HOH A 21 419 419 HOH HOH . E 4 HOH A 22 420 420 HOH HOH . E 4 HOH A 23 421 421 HOH HOH . E 4 HOH A 24 422 422 HOH HOH . E 4 HOH A 25 423 423 HOH HOH . E 4 HOH A 26 424 424 HOH HOH . E 4 HOH A 27 425 425 HOH HOH . E 4 HOH A 28 426 426 HOH HOH . E 4 HOH A 29 427 427 HOH HOH . E 4 HOH A 30 428 428 HOH HOH . E 4 HOH A 31 429 429 HOH HOH . E 4 HOH A 32 430 430 HOH HOH . E 4 HOH A 33 431 431 HOH HOH . E 4 HOH A 34 432 432 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 SEI . . . D 3 71.249 42.254 56.829 1 19.87 ? C2 SEI 300 A 1 HETATM 2 C C3 SEI . . . D 3 72.298 43.125 56.197 1 19.65 ? C3 SEI 300 A 1 HETATM 3 C C15 SEI . . . D 3 72.848 45.453 56.125 1 12.33 ? C15 SEI 300 A 1 HETATM 4 C C19 SEI . . . D 3 71.685 49.6 56.579 1 9.08 ? C19 SEI 300 A 1 HETATM 5 C C20 SEI . . . D 3 71.136 48.627 57.415 1 4.43 ? C20 SEI 300 A 1 HETATM 6 C C21 SEI . . . D 3 71.547 47.302 57.276 1 5.84 ? C21 SEI 300 A 1 HETATM 7 C C22 SEI . . . D 3 72.486 46.895 56.303 1 6.3 ? C22 SEI 300 A 1 HETATM 8 C C27 SEI . . . D 3 71.308 51.004 56.841 1 10.68 ? C27 SEI 300 A 1 HETATM 9 C C30 SEI . . . D 3 72.35 53.84 55.31 1 2 ? C30 SEI 300 A 1 HETATM 10 C C31 SEI . . . D 3 73.634 53.469 56.002 1 2 ? C31 SEI 300 A 1 HETATM 11 C C35 SEI . . . D 3 72.224 55.37 55.256 1 2 ? C35 SEI 300 A 1 HETATM 12 O O1 SEI . . . D 3 70.063 42.641 56.186 1 27.72 ? O1 SEI 300 A 1 HETATM 13 N N4 SEI . . . D 3 71.887 44.521 56.221 1 11.01 ? N4 SEI 300 A 1 HETATM 14 C C5 SEI . . . D 3 70.478 44.808 55.977 1 13.68 ? C5 SEI 300 A 1 HETATM 15 C C6 SEI . . . D 3 69.62 43.842 56.729 1 14.99 ? C6 SEI 300 A 1 HETATM 16 O O16 SEI . . . D 3 73.975 45.051 55.855 1 11.17 ? O16 SEI 300 A 1 HETATM 17 C C17 SEI . . . D 3 73.042 47.885 55.474 1 5.03 ? C17 SEI 300 A 1 HETATM 18 C C18 SEI . . . D 3 72.597 49.215 55.564 1 3.16 ? C18 SEI 300 A 1 HETATM 19 N N28 SEI . . . D 3 71.05 51.778 55.748 1 2 ? N28 SEI 300 A 1 HETATM 20 C C29 SEI . . . D 3 71.151 53.198 56.063 1 6.49 ? C29 SEI 300 A 1 HETATM 21 C C40 SEI . . . D 3 69.827 53.819 55.636 1 10.31 ? C40 SEI 300 A 1 HETATM 22 O O42 SEI . . . D 3 69.456 53.75 54.47 1 24.93 ? O42 SEI 300 A 1 HETATM 23 C C44 SEI . . . D 3 67.761 54.824 56.235 1 3.9 ? C44 SEI 300 A 1 HETATM 24 C C45 SEI . . . D 3 69.412 54.482 58.015 1 2.35 ? C45 SEI 300 A 1 HETATM 25 C C46 SEI . . . D 3 68.126 54.973 58.67 1 4 ? C46 SEI 300 A 1 HETATM 26 C C47 SEI . . . D 3 67.162 55.232 57.567 1 7.06 ? C47 SEI 300 A 1 HETATM 27 C C52 SEI . . . D 3 67.87 56.012 55.299 1 10.12 ? C52 SEI 300 A 1 HETATM 28 N N53 SEI . . . D 3 66.873 56.013 54.41 1 16.17 ? N53 SEI 300 A 1 HETATM 29 N N54 SEI . . . D 3 69.081 54.357 56.595 1 2 ? N54 SEI 300 A 1 HETATM 30 O O58 SEI . . . D 3 68.779 56.826 55.418 1 18.61 ? O58 SEI 300 A 1 HETATM 31 C C59 SEI . . . D 3 66.725 57.068 53.437 1 9.31 ? C59 SEI 300 A 1 HETATM 32 C C61 SEI . . . D 3 66.756 56.479 51.992 1 8.38 ? C61 SEI 300 A 1 HETATM 33 C C62 SEI . . . D 3 65.697 55.427 51.804 1 2 ? C62 SEI 300 A 1 HETATM 34 C C66 SEI . . . D 3 68.128 55.897 51.688 1 12.8 ? C66 SEI 300 A 1 HETATM 35 C C71 SEI . . . D 3 65.536 58.02 53.561 1 15.25 ? C71 SEI 300 A 1 HETATM 36 C C73 SEI . . . D 3 65.391 58.734 55.035 1 18.71 ? C73 SEI 300 A 1 HETATM 37 O O74 SEI . . . D 3 64.996 58.43 52.541 1 12.86 ? O74 SEI 300 A 1 HETATM 38 F F75 SEI . . . D 3 64.122 59.101 55.604 1 10.08 ? F75 SEI 300 A 1 HETATM 39 F F76 SEI . . . D 3 66.12 57.963 55.905 1 10.57 ? F76 SEI 300 A 1 HETATM 40 C C77 SEI . . . D 3 66.017 60.044 54.943 1 16.05 ? C77 SEI 300 A 1 HETATM 41 F F78 SEI . . . D 3 67.273 59.804 54.683 1 11.96 ? F78 SEI 300 A 1 HETATM 42 F F79 SEI . . . D 3 65.435 60.72 53.967 1 24.16 ? F79 SEI 300 A 1 HETATM 43 F F80 SEI . . . D 3 65.803 60.612 56.106 1 19.07 ? F80 SEI 300 A 1 HETATM 44 O O81 SEI . . . D 3 71.252 51.457 57.989 1 5.3 ? O81 SEI 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #