data_1B0V # _model_server_result.job_id B2iLUIbgQGp7NU_R-y9HCw _model_server_result.datetime_utc '2024-10-19 17:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":707}' # _entry.id 1B0V # _exptl.entry_id 1B0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 78.1 _cell.angle_beta 85.2 _cell.angle_gamma 71.9 _cell.entry_id 1B0V _cell.length_a 42 _cell.length_b 55.3 _cell.length_c 62.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 8 1_555 F FE4 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A SG CYS 16 A CYS 16 1_555 F FE1 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A SG CYS 20 A CYS 20 1_555 E FE4 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 A SG CYS 39 A CYS 39 1_555 E FE1 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 A SG CYS 42 A CYS 42 1_555 E FE2 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc6 A SG CYS 45 A CYS 45 1_555 E FE3 SF4 . A SF4 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 A SG CYS 49 A CYS 49 1_555 F FE3 F3S . A F3S 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 B SG CYS 8 B CYS 208 1_555 H FE4 F3S . B F3S 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc9 B SG CYS 16 B CYS 216 1_555 H FE1 F3S . B F3S 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc10 B SG CYS 20 B CYS 220 1_555 G FE4 SF4 . B SF4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 B SG CYS 39 B CYS 239 1_555 G FE1 SF4 . B SF4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 B SG CYS 42 B CYS 242 1_555 G FE2 SF4 . B SF4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc13 B SG CYS 45 B CYS 245 1_555 G FE3 SF4 . B SF4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc14 B SG CYS 49 B CYS 249 1_555 H FE3 F3S . B F3S 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc15 C SG CYS 8 C CYS 408 1_555 J FE4 F3S . C F3S 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc16 C SG CYS 16 C CYS 416 1_555 J FE1 F3S . C F3S 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc17 C SG CYS 20 C CYS 420 1_555 I FE4 SF4 . C SF4 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc18 C SG CYS 39 C CYS 439 1_555 I FE1 SF4 . C SF4 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc19 C SG CYS 42 C CYS 442 1_555 I FE2 SF4 . C SF4 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc20 C SG CYS 45 C CYS 445 1_555 I FE3 SF4 . C SF4 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc21 C SG CYS 49 C CYS 449 1_555 J FE3 F3S . C F3S 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc22 D SG CYS 8 D CYS 608 1_555 L FE4 F3S . D F3S 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc23 D SG CYS 16 D CYS 616 1_555 L FE1 F3S . D F3S 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc24 D SG CYS 20 D CYS 620 1_555 K FE4 SF4 . D SF4 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc25 D SG CYS 39 D CYS 639 1_555 K FE1 SF4 . D SF4 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc26 D SG CYS 42 D CYS 642 1_555 K FE2 SF4 . D SF4 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc27 D SG CYS 45 D CYS 645 1_555 K FE3 SF4 . D SF4 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc28 D SG CYS 49 D CYS 649 1_555 L FE3 F3S . D F3S 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 297 n n FE1 S3 SF4 sing 298 n n FE1 S4 SF4 sing 299 n n FE2 S1 SF4 sing 300 n n FE2 S3 SF4 sing 301 n n FE2 S4 SF4 sing 302 n n FE3 S1 SF4 sing 303 n n FE3 S2 SF4 sing 304 n n FE3 S4 SF4 sing 305 n n FE4 S1 SF4 sing 306 n n FE4 S2 SF4 sing 307 n n FE4 S3 SF4 sing 308 n n # _atom_sites.entry_id 1B0V _atom_sites.fract_transf_matrix[1][1] 0.023809 _atom_sites.fract_transf_matrix[1][2] -0.007782 _atom_sites.fract_transf_matrix[1][3] -0.000528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019025 _atom_sites.fract_transf_matrix[2][3] -0.003687 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SF4 A 1 107 107 SF4 FS4 . F 3 F3S A 1 108 108 F3S FS3 . G 2 SF4 B 1 307 307 SF4 FS4 . H 3 F3S B 1 308 308 F3S FS3 . I 2 SF4 C 1 507 507 SF4 FS4 . J 3 F3S C 1 508 508 F3S FS3 . K 2 SF4 D 1 707 707 SF4 FS4 . L 3 F3S D 1 708 708 F3S FS3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . K 2 42.816 58.834 25.689 1 19.06 ? FE1 SF4 707 D 1 HETATM 2 FE FE2 SF4 . . . K 2 42.943 61.326 26.215 1 22.94 ? FE2 SF4 707 D 1 HETATM 3 FE FE3 SF4 . . . K 2 41.059 59.939 27.002 1 18.36 ? FE3 SF4 707 D 1 HETATM 4 FE FE4 SF4 . . . K 2 41.321 60.425 24.564 1 19.37 ? FE4 SF4 707 D 1 HETATM 5 S S1 SF4 . . . K 2 40.798 61.972 26.097 1 20.25 ? S1 SF4 707 D 1 HETATM 6 S S2 SF4 . . . K 2 40.682 58.419 25.398 1 19.32 ? S2 SF4 707 D 1 HETATM 7 S S3 SF4 . . . K 2 43.469 60.368 24.208 1 19.92 ? S3 SF4 707 D 1 HETATM 8 S S4 SF4 . . . K 2 43.186 59.673 27.767 1 20.8 ? S4 SF4 707 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #