data_1B15
#
_model_server_result.job_id            oDbZKjzKbpvCfjYjLlkTZA 
_model_server_result.datetime_utc      '2024-11-14 16:53:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1b15 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":255}' 
#
_entry.id    1B15 
#
_exptl.entry_id    1B15 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              719.488 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICOTINAMIDE ADENINE DINUCLEOTIDE ACETONE ADDUCT' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.1 
_cell.angle_gamma         90 
_cell.entry_id            1B15 
_cell.length_a            66.7 
_cell.length_b            53.5 
_cell.length_c            70.7 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1B15 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H31 N7 O15 P2' 
_chem_comp.formula_weight    719.488 
_chem_comp.id                NAE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICOTINAMIDE ADENINE DINUCLEOTIDE ACETONE ADDUCT' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAE doub 237 n n 
PA O2A NAE sing 238 n n 
PA O5' NAE sing 239 n n 
PA OPP NAE sing 240 n n 
O2A HOA2 NAE sing 241 n n 
O5' C5' NAE sing 242 n n 
C5' C4' NAE sing 243 n n 
C5' "H5'1" NAE sing 244 n n 
C5' "H5'2" NAE sing 245 n n 
C4' O4' NAE sing 246 n n 
C4' C3' NAE sing 247 n n 
C4' H4' NAE sing 248 n n 
O4' C1' NAE sing 249 n n 
C3' O3' NAE sing 250 n n 
C3' C2' NAE sing 251 n n 
C3' H3' NAE sing 252 n n 
O3' "HO'3" NAE sing 253 n n 
C2' O2' NAE sing 254 n n 
C2' C1' NAE sing 255 n n 
C2' H2' NAE sing 256 n n 
O2' "HO'2" NAE sing 257 n n 
C1' N9A NAE sing 258 n n 
C1' H1' NAE sing 259 n n 
N9A C8A NAE sing 260 n y 
N9A C4A NAE sing 261 n y 
C8A N7A NAE doub 262 n y 
C8A H8A NAE sing 263 n n 
N7A C5A NAE sing 264 n y 
C5A C6A NAE sing 265 n y 
C5A C4A NAE doub 266 n y 
C6A N6A NAE sing 267 n n 
C6A N1A NAE doub 268 n y 
N6A H6A1 NAE sing 269 n n 
N6A H6A2 NAE sing 270 n n 
N1A C2A NAE sing 271 n y 
C2A N3A NAE doub 272 n y 
C2A H2A NAE sing 273 n n 
N3A C4A NAE sing 274 n y 
OPP PN NAE sing 275 n n 
PN O1N NAE doub 276 n n 
PN O2N NAE sing 277 n n 
PN O5B NAE sing 278 n n 
O5B C5B NAE sing 279 n n 
C5B C4B NAE sing 280 n n 
C5B H5A1 NAE sing 281 n n 
C5B H5A2 NAE sing 282 n n 
C4B O4B NAE sing 283 n n 
C4B C3B NAE sing 284 n n 
C4B H4B NAE sing 285 n n 
O4B C1B NAE sing 286 n n 
C3B O3B NAE sing 287 n n 
C3B C2B NAE sing 288 n n 
C3B H3B NAE sing 289 n n 
O3B HOA3 NAE sing 290 n n 
C2B O2B NAE sing 291 n n 
C2B C1B NAE sing 292 n n 
C2B H2B NAE sing 293 n n 
O2B HOB2 NAE sing 294 n n 
C1B N1N NAE sing 295 n n 
C1B H1B NAE sing 296 n n 
N1N C2N NAE sing 297 n y 
N1N C6N NAE doub 298 n y 
C2N C3N NAE doub 299 n y 
C2N H2N NAE sing 300 n n 
C3N C7N NAE sing 301 n n 
C3N C4N NAE sing 302 n y 
C7N O7N NAE doub 303 n n 
C7N N7N NAE sing 304 n n 
N7N H7N1 NAE sing 305 n n 
N7N H7N2 NAE sing 306 n n 
C4N C5N NAE doub 307 n y 
C4N C4P NAE sing 308 n n 
C5N C6N NAE sing 309 n y 
C5N H5N NAE sing 310 n n 
C6N H6N NAE sing 311 n n 
C4P C3P NAE sing 312 n n 
C4P H4P1 NAE sing 313 n n 
C4P H4P2 NAE sing 314 n n 
C3P OP NAE doub 315 n n 
C3P C2P NAE sing 316 n n 
C2P H2P1 NAE sing 317 n n 
C2P H2P2 NAE sing 318 n n 
C2P H2P3 NAE sing 319 n n 
#
_atom_sites.entry_id                     1B15 
_atom_sites.fract_transf_matrix[1][1]    0.014992 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004612 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018691 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014798 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAE A 1 255 255 NAE NAE . 
D 2 NAE B 1 256 256 NAE NAE . 
E 3 HOH A 1 256 1 HOH HOH . 
E 3 HOH A 2 257 2 HOH HOH . 
E 3 HOH A 3 258 3 HOH HOH . 
E 3 HOH A 4 259 6 HOH HOH . 
E 3 HOH A 5 260 7 HOH HOH . 
E 3 HOH A 6 261 9 HOH HOH . 
E 3 HOH A 7 262 10 HOH HOH . 
E 3 HOH A 8 263 16 HOH HOH . 
E 3 HOH A 9 264 19 HOH HOH . 
E 3 HOH A 10 265 21 HOH HOH . 
E 3 HOH A 11 266 26 HOH HOH . 
E 3 HOH A 12 267 27 HOH HOH . 
E 3 HOH A 13 268 32 HOH HOH . 
E 3 HOH A 14 269 34 HOH HOH . 
E 3 HOH A 15 270 42 HOH HOH . 
E 3 HOH A 16 271 43 HOH HOH . 
E 3 HOH A 17 272 45 HOH HOH . 
E 3 HOH A 18 273 47 HOH HOH . 
E 3 HOH A 19 274 48 HOH HOH . 
E 3 HOH A 20 275 50 HOH HOH . 
E 3 HOH A 21 276 54 HOH HOH . 
E 3 HOH A 22 277 56 HOH HOH . 
E 3 HOH A 23 278 59 HOH HOH . 
E 3 HOH A 24 279 60 HOH HOH . 
E 3 HOH A 25 280 65 HOH HOH . 
E 3 HOH A 26 281 66 HOH HOH . 
E 3 HOH A 27 282 67 HOH HOH . 
E 3 HOH A 28 283 69 HOH HOH . 
E 3 HOH A 29 284 73 HOH HOH . 
E 3 HOH A 30 285 75 HOH HOH . 
E 3 HOH A 31 286 76 HOH HOH . 
E 3 HOH A 32 287 77 HOH HOH . 
E 3 HOH A 33 288 79 HOH HOH . 
E 3 HOH A 34 289 81 HOH HOH . 
E 3 HOH A 35 290 82 HOH HOH . 
E 3 HOH A 36 291 84 HOH HOH . 
E 3 HOH A 37 292 85 HOH HOH . 
E 3 HOH A 38 293 87 HOH HOH . 
E 3 HOH A 39 294 89 HOH HOH . 
E 3 HOH A 40 295 92 HOH HOH . 
E 3 HOH A 41 296 93 HOH HOH . 
E 3 HOH A 42 297 96 HOH HOH . 
E 3 HOH A 43 298 97 HOH HOH . 
E 3 HOH A 44 299 98 HOH HOH . 
E 3 HOH A 45 300 100 HOH HOH . 
E 3 HOH A 46 301 101 HOH HOH . 
E 3 HOH A 47 302 102 HOH HOH . 
E 3 HOH A 48 303 105 HOH HOH . 
E 3 HOH A 49 304 107 HOH HOH . 
E 3 HOH A 50 305 108 HOH HOH . 
E 3 HOH A 51 306 110 HOH HOH . 
E 3 HOH A 52 307 111 HOH HOH . 
E 3 HOH A 53 308 114 HOH HOH . 
E 3 HOH A 54 309 117 HOH HOH . 
E 3 HOH A 55 310 124 HOH HOH . 
E 3 HOH A 56 311 126 HOH HOH . 
E 3 HOH A 57 312 128 HOH HOH . 
E 3 HOH A 58 313 130 HOH HOH . 
E 3 HOH A 59 314 131 HOH HOH . 
E 3 HOH A 60 315 135 HOH HOH . 
E 3 HOH A 61 316 136 HOH HOH . 
E 3 HOH A 62 317 137 HOH HOH . 
E 3 HOH A 63 318 138 HOH HOH . 
E 3 HOH A 64 319 140 HOH HOH . 
E 3 HOH A 65 320 142 HOH HOH . 
E 3 HOH A 66 321 143 HOH HOH . 
E 3 HOH A 67 322 145 HOH HOH . 
E 3 HOH A 68 323 147 HOH HOH . 
E 3 HOH A 69 324 148 HOH HOH . 
E 3 HOH A 70 325 150 HOH HOH . 
E 3 HOH A 71 326 151 HOH HOH . 
F 3 HOH B 1 257 4 HOH HOH . 
F 3 HOH B 2 258 5 HOH HOH . 
F 3 HOH B 3 259 8 HOH HOH . 
F 3 HOH B 4 260 12 HOH HOH . 
F 3 HOH B 5 261 13 HOH HOH . 
F 3 HOH B 6 262 14 HOH HOH . 
F 3 HOH B 7 263 17 HOH HOH . 
F 3 HOH B 8 264 18 HOH HOH . 
F 3 HOH B 9 265 20 HOH HOH . 
F 3 HOH B 10 266 22 HOH HOH . 
F 3 HOH B 11 267 24 HOH HOH . 
F 3 HOH B 12 268 25 HOH HOH . 
F 3 HOH B 13 269 28 HOH HOH . 
F 3 HOH B 14 270 29 HOH HOH . 
F 3 HOH B 15 271 30 HOH HOH . 
F 3 HOH B 16 272 31 HOH HOH . 
F 3 HOH B 17 273 33 HOH HOH . 
F 3 HOH B 18 274 35 HOH HOH . 
F 3 HOH B 19 275 36 HOH HOH . 
F 3 HOH B 20 276 37 HOH HOH . 
F 3 HOH B 21 277 38 HOH HOH . 
F 3 HOH B 22 278 39 HOH HOH . 
F 3 HOH B 23 279 41 HOH HOH . 
F 3 HOH B 24 280 46 HOH HOH . 
F 3 HOH B 25 281 49 HOH HOH . 
F 3 HOH B 26 282 51 HOH HOH . 
F 3 HOH B 27 283 53 HOH HOH . 
F 3 HOH B 28 284 57 HOH HOH . 
F 3 HOH B 29 285 62 HOH HOH . 
F 3 HOH B 30 286 63 HOH HOH . 
F 3 HOH B 31 287 71 HOH HOH . 
F 3 HOH B 32 288 72 HOH HOH . 
F 3 HOH B 33 289 78 HOH HOH . 
F 3 HOH B 34 290 80 HOH HOH . 
F 3 HOH B 35 291 88 HOH HOH . 
F 3 HOH B 36 292 90 HOH HOH . 
F 3 HOH B 37 293 91 HOH HOH . 
F 3 HOH B 38 294 94 HOH HOH . 
F 3 HOH B 39 295 95 HOH HOH . 
F 3 HOH B 40 296 99 HOH HOH . 
F 3 HOH B 41 297 103 HOH HOH . 
F 3 HOH B 42 298 104 HOH HOH . 
F 3 HOH B 43 299 106 HOH HOH . 
F 3 HOH B 44 300 113 HOH HOH . 
F 3 HOH B 45 301 115 HOH HOH . 
F 3 HOH B 46 302 118 HOH HOH . 
F 3 HOH B 47 303 120 HOH HOH . 
F 3 HOH B 48 304 122 HOH HOH . 
F 3 HOH B 49 305 123 HOH HOH . 
F 3 HOH B 50 306 125 HOH HOH . 
F 3 HOH B 51 307 127 HOH HOH . 
F 3 HOH B 52 308 129 HOH HOH . 
F 3 HOH B 53 309 133 HOH HOH . 
F 3 HOH B 54 310 134 HOH HOH . 
F 3 HOH B 55 311 139 HOH HOH . 
F 3 HOH B 56 312 141 HOH HOH . 
F 3 HOH B 57 313 144 HOH HOH . 
F 3 HOH B 58 314 146 HOH HOH . 
F 3 HOH B 59 315 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAE . . . C 2 7.038 -11.319 -0.44 1 19.06 ? PA NAE 255 A 1 
HETATM 2 O O1A NAE . . . C 2 6.225 -12.021 0.571 1 20.55 ? O1A NAE 255 A 1 
HETATM 3 O O2A NAE . . . C 2 6.862 -11.724 -1.932 1 23.23 ? O2A NAE 255 A 1 
HETATM 4 O O5' NAE . . . C 2 8.594 -11.537 -0.16 1 21.54 ? O5' NAE 255 A 1 
HETATM 5 C C5' NAE . . . C 2 9.178 -11.718 1.217 1 17.61 ? C5' NAE 255 A 1 
HETATM 6 C C4' NAE . . . C 2 10.607 -12.051 0.862 1 19.03 ? C4' NAE 255 A 1 
HETATM 7 O O4' NAE . . . C 2 11.245 -12.21 2.188 1 16.83 ? O4' NAE 255 A 1 
HETATM 8 C C3' NAE . . . C 2 10.694 -13.5 0.214 1 17.98 ? C3' NAE 255 A 1 
HETATM 9 O O3' NAE . . . C 2 11.967 -13.549 -0.538 1 17.43 ? O3' NAE 255 A 1 
HETATM 10 C C2' NAE . . . C 2 10.749 -14.42 1.412 1 18.24 ? C2' NAE 255 A 1 
HETATM 11 O O2' NAE . . . C 2 11.232 -15.707 1.292 1 17.42 ? O2' NAE 255 A 1 
HETATM 12 C C1' NAE . . . C 2 11.663 -13.462 2.298 1 16.36 ? C1' NAE 255 A 1 
HETATM 13 N N9A NAE . . . C 2 11.638 -13.931 3.646 1 20.04 ? N9A NAE 255 A 1 
HETATM 14 C C8A NAE . . . C 2 10.58 -13.952 4.567 1 19.1 ? C8A NAE 255 A 1 
HETATM 15 N N7A NAE . . . C 2 10.894 -14.505 5.722 1 18.89 ? N7A NAE 255 A 1 
HETATM 16 C C5A NAE . . . C 2 12.222 -14.829 5.637 1 18.88 ? C5A NAE 255 A 1 
HETATM 17 C C6A NAE . . . C 2 13.139 -15.449 6.659 1 18.54 ? C6A NAE 255 A 1 
HETATM 18 N N6A NAE . . . C 2 12.756 -15.763 7.856 1 19.14 ? N6A NAE 255 A 1 
HETATM 19 N N1A NAE . . . C 2 14.431 -15.645 6.157 1 17.73 ? N1A NAE 255 A 1 
HETATM 20 C C2A NAE . . . C 2 14.832 -15.299 4.938 1 18.27 ? C2A NAE 255 A 1 
HETATM 21 N N3A NAE . . . C 2 14.021 -14.709 3.933 1 16.69 ? N3A NAE 255 A 1 
HETATM 22 C C4A NAE . . . C 2 12.694 -14.497 4.366 1 17.49 ? C4A NAE 255 A 1 
HETATM 23 O OPP NAE . . . C 2 7.001 -9.779 -0.276 1 18.5 ? OPP NAE 255 A 1 
HETATM 24 P PN NAE . . . C 2 7.54 -8.457 -0.999 1 20.06 ? PN NAE 255 A 1 
HETATM 25 O O1N NAE . . . C 2 6.426 -7.515 -1.13 1 16.22 ? O1N NAE 255 A 1 
HETATM 26 O O2N NAE . . . C 2 8.423 -8.89 -2.137 1 16.4 ? O2N NAE 255 A 1 
HETATM 27 O O5B NAE . . . C 2 8.432 -7.723 0.115 1 18.59 ? O5B NAE 255 A 1 
HETATM 28 C C5B NAE . . . C 2 9.894 -7.697 0.054 1 18.46 ? C5B NAE 255 A 1 
HETATM 29 C C4B NAE . . . C 2 10.491 -6.712 0.993 1 18.94 ? C4B NAE 255 A 1 
HETATM 30 O O4B NAE . . . C 2 9.801 -5.434 0.663 1 18.1 ? O4B NAE 255 A 1 
HETATM 31 C C3B NAE . . . C 2 10.065 -6.915 2.535 1 18.69 ? C3B NAE 255 A 1 
HETATM 32 O O3B NAE . . . C 2 11.098 -6.382 3.257 1 19.46 ? O3B NAE 255 A 1 
HETATM 33 C C2B NAE . . . C 2 8.842 -6.015 2.669 1 18.44 ? C2B NAE 255 A 1 
HETATM 34 O O2B NAE . . . C 2 8.437 -5.724 3.937 1 17.38 ? O2B NAE 255 A 1 
HETATM 35 C C1B NAE . . . C 2 9.217 -4.857 1.806 1 18 ? C1B NAE 255 A 1 
HETATM 36 N N1N NAE . . . C 2 8.195 -3.897 1.329 1 18.47 ? N1N NAE 255 A 1 
HETATM 37 C C2N NAE . . . C 2 7.067 -4.364 0.59 1 18.47 ? C2N NAE 255 A 1 
HETATM 38 C C3N NAE . . . C 2 6.249 -3.374 0.134 1 17.58 ? C3N NAE 255 A 1 
HETATM 39 C C7N NAE . . . C 2 5.098 -3.949 -0.841 1 17.12 ? C7N NAE 255 A 1 
HETATM 40 O O7N NAE . . . C 2 4.178 -3.16 -1.088 1 16.9 ? O7N NAE 255 A 1 
HETATM 41 N N7N NAE . . . C 2 5.006 -5.259 -1.237 1 16.77 ? N7N NAE 255 A 1 
HETATM 42 C C4N NAE . . . C 2 6.352 -1.991 0.398 1 19.42 ? C4N NAE 255 A 1 
HETATM 43 C C5N NAE . . . C 2 7.626 -1.624 0.994 1 18.84 ? C5N NAE 255 A 1 
HETATM 44 C C6N NAE . . . C 2 8.516 -2.585 1.433 1 17.43 ? C6N NAE 255 A 1 
HETATM 45 C C4P NAE . . . C 2 5.14 -1.361 1.161 1 19.87 ? C4P NAE 255 A 1 
HETATM 46 C C3P NAE . . . C 2 4.868 -2.208 2.451 1 20.98 ? C3P NAE 255 A 1 
HETATM 47 O OP NAE . . . C 2 5.714 -1.989 3.461 1 19.09 ? OP NAE 255 A 1 
HETATM 48 C C2P NAE . . . C 2 3.792 -3.257 2.527 1 20.96 ? C2P NAE 255 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           48 
#