data_1B15 # _model_server_result.job_id -z4HMaGT5Wy36zItjScP8A _model_server_result.datetime_utc '2024-11-21 22:41:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":256}' # _entry.id 1B15 # _exptl.entry_id 1B15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 719.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINAMIDE ADENINE DINUCLEOTIDE ACETONE ADDUCT' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.1 _cell.angle_gamma 90 _cell.entry_id 1B15 _cell.length_a 66.7 _cell.length_b 53.5 _cell.length_c 70.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H31 N7 O15 P2' _chem_comp.formula_weight 719.488 _chem_comp.id NAE _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINAMIDE ADENINE DINUCLEOTIDE ACETONE ADDUCT' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAE doub 237 n n PA O2A NAE sing 238 n n PA O5' NAE sing 239 n n PA OPP NAE sing 240 n n O2A HOA2 NAE sing 241 n n O5' C5' NAE sing 242 n n C5' C4' NAE sing 243 n n C5' "H5'1" NAE sing 244 n n C5' "H5'2" NAE sing 245 n n C4' O4' NAE sing 246 n n C4' C3' NAE sing 247 n n C4' H4' NAE sing 248 n n O4' C1' NAE sing 249 n n C3' O3' NAE sing 250 n n C3' C2' NAE sing 251 n n C3' H3' NAE sing 252 n n O3' "HO'3" NAE sing 253 n n C2' O2' NAE sing 254 n n C2' C1' NAE sing 255 n n C2' H2' NAE sing 256 n n O2' "HO'2" NAE sing 257 n n C1' N9A NAE sing 258 n n C1' H1' NAE sing 259 n n N9A C8A NAE sing 260 n y N9A C4A NAE sing 261 n y C8A N7A NAE doub 262 n y C8A H8A NAE sing 263 n n N7A C5A NAE sing 264 n y C5A C6A NAE sing 265 n y C5A C4A NAE doub 266 n y C6A N6A NAE sing 267 n n C6A N1A NAE doub 268 n y N6A H6A1 NAE sing 269 n n N6A H6A2 NAE sing 270 n n N1A C2A NAE sing 271 n y C2A N3A NAE doub 272 n y C2A H2A NAE sing 273 n n N3A C4A NAE sing 274 n y OPP PN NAE sing 275 n n PN O1N NAE doub 276 n n PN O2N NAE sing 277 n n PN O5B NAE sing 278 n n O5B C5B NAE sing 279 n n C5B C4B NAE sing 280 n n C5B H5A1 NAE sing 281 n n C5B H5A2 NAE sing 282 n n C4B O4B NAE sing 283 n n C4B C3B NAE sing 284 n n C4B H4B NAE sing 285 n n O4B C1B NAE sing 286 n n C3B O3B NAE sing 287 n n C3B C2B NAE sing 288 n n C3B H3B NAE sing 289 n n O3B HOA3 NAE sing 290 n n C2B O2B NAE sing 291 n n C2B C1B NAE sing 292 n n C2B H2B NAE sing 293 n n O2B HOB2 NAE sing 294 n n C1B N1N NAE sing 295 n n C1B H1B NAE sing 296 n n N1N C2N NAE sing 297 n y N1N C6N NAE doub 298 n y C2N C3N NAE doub 299 n y C2N H2N NAE sing 300 n n C3N C7N NAE sing 301 n n C3N C4N NAE sing 302 n y C7N O7N NAE doub 303 n n C7N N7N NAE sing 304 n n N7N H7N1 NAE sing 305 n n N7N H7N2 NAE sing 306 n n C4N C5N NAE doub 307 n y C4N C4P NAE sing 308 n n C5N C6N NAE sing 309 n y C5N H5N NAE sing 310 n n C6N H6N NAE sing 311 n n C4P C3P NAE sing 312 n n C4P H4P1 NAE sing 313 n n C4P H4P2 NAE sing 314 n n C3P OP NAE doub 315 n n C3P C2P NAE sing 316 n n C2P H2P1 NAE sing 317 n n C2P H2P2 NAE sing 318 n n C2P H2P3 NAE sing 319 n n # _atom_sites.entry_id 1B15 _atom_sites.fract_transf_matrix[1][1] 0.014992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004612 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAE A 1 255 255 NAE NAE . D 2 NAE B 1 256 256 NAE NAE . E 3 HOH A 1 256 1 HOH HOH . E 3 HOH A 2 257 2 HOH HOH . E 3 HOH A 3 258 3 HOH HOH . E 3 HOH A 4 259 6 HOH HOH . E 3 HOH A 5 260 7 HOH HOH . E 3 HOH A 6 261 9 HOH HOH . E 3 HOH A 7 262 10 HOH HOH . E 3 HOH A 8 263 16 HOH HOH . E 3 HOH A 9 264 19 HOH HOH . E 3 HOH A 10 265 21 HOH HOH . E 3 HOH A 11 266 26 HOH HOH . E 3 HOH A 12 267 27 HOH HOH . E 3 HOH A 13 268 32 HOH HOH . E 3 HOH A 14 269 34 HOH HOH . E 3 HOH A 15 270 42 HOH HOH . E 3 HOH A 16 271 43 HOH HOH . E 3 HOH A 17 272 45 HOH HOH . E 3 HOH A 18 273 47 HOH HOH . E 3 HOH A 19 274 48 HOH HOH . E 3 HOH A 20 275 50 HOH HOH . E 3 HOH A 21 276 54 HOH HOH . E 3 HOH A 22 277 56 HOH HOH . E 3 HOH A 23 278 59 HOH HOH . E 3 HOH A 24 279 60 HOH HOH . E 3 HOH A 25 280 65 HOH HOH . E 3 HOH A 26 281 66 HOH HOH . E 3 HOH A 27 282 67 HOH HOH . E 3 HOH A 28 283 69 HOH HOH . E 3 HOH A 29 284 73 HOH HOH . E 3 HOH A 30 285 75 HOH HOH . E 3 HOH A 31 286 76 HOH HOH . E 3 HOH A 32 287 77 HOH HOH . E 3 HOH A 33 288 79 HOH HOH . E 3 HOH A 34 289 81 HOH HOH . E 3 HOH A 35 290 82 HOH HOH . E 3 HOH A 36 291 84 HOH HOH . E 3 HOH A 37 292 85 HOH HOH . E 3 HOH A 38 293 87 HOH HOH . E 3 HOH A 39 294 89 HOH HOH . E 3 HOH A 40 295 92 HOH HOH . E 3 HOH A 41 296 93 HOH HOH . E 3 HOH A 42 297 96 HOH HOH . E 3 HOH A 43 298 97 HOH HOH . E 3 HOH A 44 299 98 HOH HOH . E 3 HOH A 45 300 100 HOH HOH . E 3 HOH A 46 301 101 HOH HOH . E 3 HOH A 47 302 102 HOH HOH . E 3 HOH A 48 303 105 HOH HOH . E 3 HOH A 49 304 107 HOH HOH . E 3 HOH A 50 305 108 HOH HOH . E 3 HOH A 51 306 110 HOH HOH . E 3 HOH A 52 307 111 HOH HOH . E 3 HOH A 53 308 114 HOH HOH . E 3 HOH A 54 309 117 HOH HOH . E 3 HOH A 55 310 124 HOH HOH . E 3 HOH A 56 311 126 HOH HOH . E 3 HOH A 57 312 128 HOH HOH . E 3 HOH A 58 313 130 HOH HOH . E 3 HOH A 59 314 131 HOH HOH . E 3 HOH A 60 315 135 HOH HOH . E 3 HOH A 61 316 136 HOH HOH . E 3 HOH A 62 317 137 HOH HOH . E 3 HOH A 63 318 138 HOH HOH . E 3 HOH A 64 319 140 HOH HOH . E 3 HOH A 65 320 142 HOH HOH . E 3 HOH A 66 321 143 HOH HOH . E 3 HOH A 67 322 145 HOH HOH . E 3 HOH A 68 323 147 HOH HOH . E 3 HOH A 69 324 148 HOH HOH . E 3 HOH A 70 325 150 HOH HOH . E 3 HOH A 71 326 151 HOH HOH . F 3 HOH B 1 257 4 HOH HOH . F 3 HOH B 2 258 5 HOH HOH . F 3 HOH B 3 259 8 HOH HOH . F 3 HOH B 4 260 12 HOH HOH . F 3 HOH B 5 261 13 HOH HOH . F 3 HOH B 6 262 14 HOH HOH . F 3 HOH B 7 263 17 HOH HOH . F 3 HOH B 8 264 18 HOH HOH . F 3 HOH B 9 265 20 HOH HOH . F 3 HOH B 10 266 22 HOH HOH . F 3 HOH B 11 267 24 HOH HOH . F 3 HOH B 12 268 25 HOH HOH . F 3 HOH B 13 269 28 HOH HOH . F 3 HOH B 14 270 29 HOH HOH . F 3 HOH B 15 271 30 HOH HOH . F 3 HOH B 16 272 31 HOH HOH . F 3 HOH B 17 273 33 HOH HOH . F 3 HOH B 18 274 35 HOH HOH . F 3 HOH B 19 275 36 HOH HOH . F 3 HOH B 20 276 37 HOH HOH . F 3 HOH B 21 277 38 HOH HOH . F 3 HOH B 22 278 39 HOH HOH . F 3 HOH B 23 279 41 HOH HOH . F 3 HOH B 24 280 46 HOH HOH . F 3 HOH B 25 281 49 HOH HOH . F 3 HOH B 26 282 51 HOH HOH . F 3 HOH B 27 283 53 HOH HOH . F 3 HOH B 28 284 57 HOH HOH . F 3 HOH B 29 285 62 HOH HOH . F 3 HOH B 30 286 63 HOH HOH . F 3 HOH B 31 287 71 HOH HOH . F 3 HOH B 32 288 72 HOH HOH . F 3 HOH B 33 289 78 HOH HOH . F 3 HOH B 34 290 80 HOH HOH . F 3 HOH B 35 291 88 HOH HOH . F 3 HOH B 36 292 90 HOH HOH . F 3 HOH B 37 293 91 HOH HOH . F 3 HOH B 38 294 94 HOH HOH . F 3 HOH B 39 295 95 HOH HOH . F 3 HOH B 40 296 99 HOH HOH . F 3 HOH B 41 297 103 HOH HOH . F 3 HOH B 42 298 104 HOH HOH . F 3 HOH B 43 299 106 HOH HOH . F 3 HOH B 44 300 113 HOH HOH . F 3 HOH B 45 301 115 HOH HOH . F 3 HOH B 46 302 118 HOH HOH . F 3 HOH B 47 303 120 HOH HOH . F 3 HOH B 48 304 122 HOH HOH . F 3 HOH B 49 305 123 HOH HOH . F 3 HOH B 50 306 125 HOH HOH . F 3 HOH B 51 307 127 HOH HOH . F 3 HOH B 52 308 129 HOH HOH . F 3 HOH B 53 309 133 HOH HOH . F 3 HOH B 54 310 134 HOH HOH . F 3 HOH B 55 311 139 HOH HOH . F 3 HOH B 56 312 141 HOH HOH . F 3 HOH B 57 313 144 HOH HOH . F 3 HOH B 58 314 146 HOH HOH . F 3 HOH B 59 315 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAE . . . D 2 18.222 3.401 33.853 1 26.89 ? PA NAE 256 B 1 HETATM 2 O O1A NAE . . . D 2 19.042 2.244 33.383 1 24.52 ? O1A NAE 256 B 1 HETATM 3 O O2A NAE . . . D 2 18.528 4.207 35.142 1 26.43 ? O2A NAE 256 B 1 HETATM 4 O O5' NAE . . . D 2 16.707 2.888 34.006 1 25.45 ? O5' NAE 256 B 1 HETATM 5 C C5' NAE . . . D 2 16.374 1.565 33.389 1 23.98 ? C5' NAE 256 B 1 HETATM 6 C C4' NAE . . . D 2 15.004 1.275 33.895 1 24.32 ? C4' NAE 256 B 1 HETATM 7 O O4' NAE . . . D 2 14.501 0.251 32.943 1 23.93 ? O4' NAE 256 B 1 HETATM 8 C C3' NAE . . . D 2 15.109 0.523 35.278 1 23.54 ? C3' NAE 256 B 1 HETATM 9 O O3' NAE . . . D 2 13.884 0.793 36.041 1 25.23 ? O3' NAE 256 B 1 HETATM 10 C C2' NAE . . . D 2 15.212 -0.913 34.922 1 23.83 ? C2' NAE 256 B 1 HETATM 11 O O2' NAE . . . D 2 14.926 -1.89 35.842 1 24.23 ? O2' NAE 256 B 1 HETATM 12 C C1' NAE . . . D 2 14.241 -0.846 33.639 1 23.24 ? C1' NAE 256 B 1 HETATM 13 N N9A NAE . . . D 2 14.449 -2.05 32.937 1 22.74 ? N9A NAE 256 B 1 HETATM 14 C C8A NAE . . . D 2 15.55 -2.523 32.236 1 22.75 ? C8A NAE 256 B 1 HETATM 15 N N7A NAE . . . D 2 15.387 -3.727 31.737 1 22.67 ? N7A NAE 256 B 1 HETATM 16 C C5A NAE . . . D 2 14.125 -4.143 32.089 1 22.31 ? C5A NAE 256 B 1 HETATM 17 C C6A NAE . . . D 2 13.351 -5.387 31.844 1 22.31 ? C6A NAE 256 B 1 HETATM 18 N N6A NAE . . . D 2 13.704 -6.448 31.176 1 22.02 ? N6A NAE 256 B 1 HETATM 19 N N1A NAE . . . D 2 12.055 -5.347 32.435 1 21.94 ? N1A NAE 256 B 1 HETATM 20 C C2A NAE . . . D 2 11.552 -4.345 33.131 1 21.8 ? C2A NAE 256 B 1 HETATM 21 N N3A NAE . . . D 2 12.246 -3.145 33.397 1 22.6 ? N3A NAE 256 B 1 HETATM 22 C C4A NAE . . . D 2 13.554 -3.113 32.843 1 22.63 ? C4A NAE 256 B 1 HETATM 23 O OPP NAE . . . D 2 18.046 4.416 32.657 1 25.31 ? OPP NAE 256 B 1 HETATM 24 P PN NAE . . . D 2 17.197 5.762 32.394 1 26.15 ? PN NAE 256 B 1 HETATM 25 O O1N NAE . . . D 2 18.048 6.807 31.912 1 26 ? O1N NAE 256 B 1 HETATM 26 O O2N NAE . . . D 2 16.246 5.969 33.543 1 27.42 ? O2N NAE 256 B 1 HETATM 27 O O5B NAE . . . D 2 16.224 5.229 31.211 1 28.93 ? O5B NAE 256 B 1 HETATM 28 C C5B NAE . . . D 2 14.766 5.135 31.389 1 26.42 ? C5B NAE 256 B 1 HETATM 29 C C4B NAE . . . D 2 14.108 5.157 30.029 1 27.75 ? C4B NAE 256 B 1 HETATM 30 O O4B NAE . . . D 2 14.539 6.373 29.299 1 25.94 ? O4B NAE 256 B 1 HETATM 31 C C3B NAE . . . D 2 14.712 4.014 29.099 1 26.58 ? C3B NAE 256 B 1 HETATM 32 O O3B NAE . . . D 2 13.684 3.523 28.36 1 27.33 ? O3B NAE 256 B 1 HETATM 33 C C2B NAE . . . D 2 15.799 4.682 28.261 1 27.55 ? C2B NAE 256 B 1 HETATM 34 O O2B NAE . . . D 2 16.061 3.931 27.12 1 25.52 ? O2B NAE 256 B 1 HETATM 35 C C1B NAE . . . D 2 15.276 6.052 28.142 1 26.49 ? C1B NAE 256 B 1 HETATM 36 N N1N NAE . . . D 2 16.098 7.224 27.75 1 27.11 ? N1N NAE 256 B 1 HETATM 37 C C2N NAE . . . D 2 17.252 7.664 28.434 1 26.42 ? C2N NAE 256 B 1 HETATM 38 C C3N NAE . . . D 2 17.71 8.904 28.095 1 26.1 ? C3N NAE 256 B 1 HETATM 39 C C7N NAE . . . D 2 18.99 9.314 28.98 1 24.88 ? C7N NAE 256 B 1 HETATM 40 O O7N NAE . . . D 2 19.668 10.276 28.602 1 22.91 ? O7N NAE 256 B 1 HETATM 41 N N7N NAE . . . D 2 19.284 8.591 30.123 1 26.26 ? N7N NAE 256 B 1 HETATM 42 C C4N NAE . . . D 2 17.321 9.691 26.964 1 27.2 ? C4N NAE 256 B 1 HETATM 43 C C5N NAE . . . D 2 16.062 9.2 26.423 1 26.95 ? C5N NAE 256 B 1 HETATM 44 C C6N NAE . . . D 2 15.556 7.958 26.728 1 26.84 ? C6N NAE 256 B 1 HETATM 45 C C4P NAE . . . D 2 18.4 9.693 25.837 1 27.78 ? C4P NAE 256 B 1 HETATM 46 C C3P NAE . . . D 2 18.872 8.288 25.474 1 28.04 ? C3P NAE 256 B 1 HETATM 47 O OP NAE . . . D 2 17.936 7.438 25.011 1 29.38 ? OP NAE 256 B 1 HETATM 48 C C2P NAE . . . D 2 20.308 7.821 25.638 1 29.64 ? C2P NAE 256 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #