data_1B2L # _model_server_result.job_id aytcOW1_YtHHbNAoPdhYgw _model_server_result.datetime_utc '2024-12-26 13:45:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":256}' # _entry.id 1B2L # _exptl.entry_id 1B2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 98.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYCLOHEXANONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1B2L _cell.length_a 54.1 _cell.length_b 54.1 _cell.length_c 168.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 93.703949 56.266667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 2 A ASP 2 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc2 A OD1 ASP 2 A ASP 2 6_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc3 A OG1 THR 4 A THR 4 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc4 A OG1 THR 4 A THR 4 6_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc5 B CA CA . A CA 301 1_555 F O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 B CA CA . A CA 301 1_555 F O HOH . A HOH 306 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 B CA CA . A CA 301 1_555 F O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc8 B CA CA . A CA 301 1_555 F O HOH . A HOH 325 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? # _chem_comp.formula 'C6 H10 O' _chem_comp.formula_weight 98.143 _chem_comp.id CYH _chem_comp.mon_nstd_flag . _chem_comp.name CYCLOHEXANONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CYH doub 70 n n C1 C2 CYH sing 71 n n C1 C6 CYH sing 72 n n C2 C3 CYH sing 73 n n C2 H21 CYH sing 74 n n C2 H22 CYH sing 75 n n C3 C4 CYH sing 76 n n C3 H31 CYH sing 77 n n C3 H32 CYH sing 78 n n C4 C5 CYH sing 79 n n C4 H41 CYH sing 80 n n C4 H42 CYH sing 81 n n C5 C6 CYH sing 82 n n C5 H51 CYH sing 83 n n C5 H52 CYH sing 84 n n C6 H61 CYH sing 85 n n C6 H62 CYH sing 86 n n # _atom_sites.entry_id 1B2L _atom_sites.fract_transf_matrix[1][1] 0.018484 _atom_sites.fract_transf_matrix[1][2] 0.010672 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 3 NDC A 1 255 255 NDC NDC . D 4 CYH A 1 256 256 CYH CYH . E 5 DTT A 1 257 257 DTT DTT . F 6 HOH A 1 302 2 HOH HOH . F 6 HOH A 2 303 3 HOH HOH . F 6 HOH A 3 304 4 HOH HOH . F 6 HOH A 4 305 5 HOH HOH . F 6 HOH A 5 306 6 HOH HOH . F 6 HOH A 6 307 7 HOH HOH . F 6 HOH A 7 308 8 HOH HOH . F 6 HOH A 8 309 9 HOH HOH . F 6 HOH A 9 310 10 HOH HOH . F 6 HOH A 10 311 11 HOH HOH . F 6 HOH A 11 312 12 HOH HOH . F 6 HOH A 12 313 13 HOH HOH . F 6 HOH A 13 314 14 HOH HOH . F 6 HOH A 14 315 15 HOH HOH . F 6 HOH A 15 316 16 HOH HOH . F 6 HOH A 16 317 17 HOH HOH . F 6 HOH A 17 318 18 HOH HOH . F 6 HOH A 18 319 19 HOH HOH . F 6 HOH A 19 320 20 HOH HOH . F 6 HOH A 20 321 21 HOH HOH . F 6 HOH A 21 322 22 HOH HOH . F 6 HOH A 22 323 23 HOH HOH . F 6 HOH A 23 324 24 HOH HOH . F 6 HOH A 24 325 25 HOH HOH . F 6 HOH A 25 326 26 HOH HOH . F 6 HOH A 26 327 27 HOH HOH . F 6 HOH A 27 328 28 HOH HOH . F 6 HOH A 28 329 29 HOH HOH . F 6 HOH A 29 330 30 HOH HOH . F 6 HOH A 30 331 31 HOH HOH . F 6 HOH A 31 332 32 HOH HOH . F 6 HOH A 32 333 33 HOH HOH . F 6 HOH A 33 334 34 HOH HOH . F 6 HOH A 34 335 35 HOH HOH . F 6 HOH A 35 336 36 HOH HOH . F 6 HOH A 36 337 37 HOH HOH . F 6 HOH A 37 338 38 HOH HOH . F 6 HOH A 38 339 39 HOH HOH . F 6 HOH A 39 340 40 HOH HOH . F 6 HOH A 40 341 41 HOH HOH . F 6 HOH A 41 342 42 HOH HOH . F 6 HOH A 42 343 43 HOH HOH . F 6 HOH A 43 344 44 HOH HOH . F 6 HOH A 44 345 45 HOH HOH . F 6 HOH A 45 346 46 HOH HOH . F 6 HOH A 46 347 47 HOH HOH . F 6 HOH A 47 348 48 HOH HOH . F 6 HOH A 48 349 49 HOH HOH . F 6 HOH A 49 350 50 HOH HOH . F 6 HOH A 50 351 51 HOH HOH . F 6 HOH A 51 352 52 HOH HOH . F 6 HOH A 52 353 53 HOH HOH . F 6 HOH A 53 354 54 HOH HOH . F 6 HOH A 54 355 55 HOH HOH . F 6 HOH A 55 356 56 HOH HOH . F 6 HOH A 56 357 57 HOH HOH . F 6 HOH A 57 358 58 HOH HOH . F 6 HOH A 58 359 59 HOH HOH . F 6 HOH A 59 360 60 HOH HOH . F 6 HOH A 60 361 61 HOH HOH . F 6 HOH A 61 362 62 HOH HOH . F 6 HOH A 62 363 63 HOH HOH . F 6 HOH A 63 364 64 HOH HOH . F 6 HOH A 64 365 65 HOH HOH . F 6 HOH A 65 366 66 HOH HOH . F 6 HOH A 66 367 67 HOH HOH . F 6 HOH A 67 368 68 HOH HOH . F 6 HOH A 68 369 69 HOH HOH . F 6 HOH A 69 370 70 HOH HOH . F 6 HOH A 70 371 71 HOH HOH . F 6 HOH A 71 372 72 HOH HOH . F 6 HOH A 72 373 73 HOH HOH . F 6 HOH A 73 374 74 HOH HOH . F 6 HOH A 74 375 75 HOH HOH . F 6 HOH A 75 376 76 HOH HOH . F 6 HOH A 76 377 77 HOH HOH . F 6 HOH A 77 378 78 HOH HOH . F 6 HOH A 78 379 79 HOH HOH . F 6 HOH A 79 380 80 HOH HOH . F 6 HOH A 80 381 81 HOH HOH . F 6 HOH A 81 382 82 HOH HOH . F 6 HOH A 82 383 83 HOH HOH . F 6 HOH A 83 384 84 HOH HOH . F 6 HOH A 84 385 85 HOH HOH . F 6 HOH A 85 386 86 HOH HOH . F 6 HOH A 86 387 87 HOH HOH . F 6 HOH A 87 388 88 HOH HOH . F 6 HOH A 88 389 89 HOH HOH . F 6 HOH A 89 390 90 HOH HOH . F 6 HOH A 90 391 91 HOH HOH . F 6 HOH A 91 392 92 HOH HOH . F 6 HOH A 92 393 93 HOH HOH . F 6 HOH A 93 394 94 HOH HOH . F 6 HOH A 94 395 95 HOH HOH . F 6 HOH A 95 396 96 HOH HOH . F 6 HOH A 96 397 97 HOH HOH . F 6 HOH A 97 398 98 HOH HOH . F 6 HOH A 98 399 99 HOH HOH . F 6 HOH A 99 400 100 HOH HOH . F 6 HOH A 100 401 101 HOH HOH . F 6 HOH A 101 402 102 HOH HOH . F 6 HOH A 102 403 103 HOH HOH . F 6 HOH A 103 404 104 HOH HOH . F 6 HOH A 104 405 105 HOH HOH . F 6 HOH A 105 406 106 HOH HOH . F 6 HOH A 106 407 107 HOH HOH . F 6 HOH A 107 408 108 HOH HOH . F 6 HOH A 108 409 109 HOH HOH . F 6 HOH A 109 410 110 HOH HOH . F 6 HOH A 110 411 111 HOH HOH . F 6 HOH A 111 412 112 HOH HOH . F 6 HOH A 112 413 113 HOH HOH . F 6 HOH A 113 414 114 HOH HOH . F 6 HOH A 114 415 115 HOH HOH . F 6 HOH A 115 416 116 HOH HOH . F 6 HOH A 116 417 117 HOH HOH . F 6 HOH A 117 418 118 HOH HOH . F 6 HOH A 118 419 119 HOH HOH . F 6 HOH A 119 420 120 HOH HOH . F 6 HOH A 120 421 121 HOH HOH . F 6 HOH A 121 422 122 HOH HOH . F 6 HOH A 122 423 123 HOH HOH . F 6 HOH A 123 424 124 HOH HOH . F 6 HOH A 124 425 125 HOH HOH . F 6 HOH A 125 426 126 HOH HOH . F 6 HOH A 126 427 127 HOH HOH . F 6 HOH A 127 428 128 HOH HOH . F 6 HOH A 128 429 129 HOH HOH . F 6 HOH A 129 430 130 HOH HOH . F 6 HOH A 130 431 131 HOH HOH . F 6 HOH A 131 432 132 HOH HOH . F 6 HOH A 132 433 133 HOH HOH . F 6 HOH A 133 434 134 HOH HOH . F 6 HOH A 134 435 135 HOH HOH . F 6 HOH A 135 436 136 HOH HOH . F 6 HOH A 136 437 137 HOH HOH . F 6 HOH A 137 438 138 HOH HOH . F 6 HOH A 138 439 139 HOH HOH . F 6 HOH A 139 440 140 HOH HOH . F 6 HOH A 140 441 141 HOH HOH . F 6 HOH A 141 442 142 HOH HOH . F 6 HOH A 142 443 143 HOH HOH . F 6 HOH A 143 444 144 HOH HOH . F 6 HOH A 144 445 145 HOH HOH . F 6 HOH A 145 446 146 HOH HOH . F 6 HOH A 146 447 147 HOH HOH . F 6 HOH A 147 448 148 HOH HOH . F 6 HOH A 148 449 149 HOH HOH . F 6 HOH A 149 450 150 HOH HOH . F 6 HOH A 150 451 151 HOH HOH . F 6 HOH A 151 452 152 HOH HOH . F 6 HOH A 152 453 153 HOH HOH . F 6 HOH A 153 454 154 HOH HOH . F 6 HOH A 154 455 155 HOH HOH . F 6 HOH A 155 456 156 HOH HOH . F 6 HOH A 156 457 157 HOH HOH . F 6 HOH A 157 458 158 HOH HOH . F 6 HOH A 158 459 159 HOH HOH . F 6 HOH A 159 460 160 HOH HOH . F 6 HOH A 160 461 161 HOH HOH . F 6 HOH A 161 462 162 HOH HOH . F 6 HOH A 162 463 163 HOH HOH . F 6 HOH A 163 464 164 HOH HOH . F 6 HOH A 164 465 165 HOH HOH . F 6 HOH A 165 466 166 HOH HOH . F 6 HOH A 166 467 167 HOH HOH . F 6 HOH A 167 468 168 HOH HOH . F 6 HOH A 168 469 169 HOH HOH . F 6 HOH A 169 470 170 HOH HOH . F 6 HOH A 170 471 171 HOH HOH . F 6 HOH A 171 472 172 HOH HOH . F 6 HOH A 172 473 173 HOH HOH . F 6 HOH A 173 474 174 HOH HOH . F 6 HOH A 174 475 175 HOH HOH . F 6 HOH A 175 476 176 HOH HOH . F 6 HOH A 176 477 177 HOH HOH . F 6 HOH A 177 478 178 HOH HOH . F 6 HOH A 178 479 179 HOH HOH . F 6 HOH A 179 480 180 HOH HOH . F 6 HOH A 180 481 181 HOH HOH . F 6 HOH A 181 482 182 HOH HOH . F 6 HOH A 182 483 183 HOH HOH . F 6 HOH A 183 484 184 HOH HOH . F 6 HOH A 184 485 185 HOH HOH . F 6 HOH A 185 486 186 HOH HOH . F 6 HOH A 186 487 187 HOH HOH . F 6 HOH A 187 488 188 HOH HOH . F 6 HOH A 188 489 189 HOH HOH . F 6 HOH A 189 490 190 HOH HOH . F 6 HOH A 190 491 191 HOH HOH . F 6 HOH A 191 492 192 HOH HOH . F 6 HOH A 192 493 193 HOH HOH . F 6 HOH A 193 494 194 HOH HOH . F 6 HOH A 194 495 195 HOH HOH . F 6 HOH A 195 496 196 HOH HOH . F 6 HOH A 196 497 197 HOH HOH . F 6 HOH A 197 498 198 HOH HOH . F 6 HOH A 198 499 199 HOH HOH . F 6 HOH A 199 500 200 HOH HOH . F 6 HOH A 200 501 201 HOH HOH . F 6 HOH A 201 502 202 HOH HOH . F 6 HOH A 202 503 203 HOH HOH . F 6 HOH A 203 504 204 HOH HOH . F 6 HOH A 204 505 205 HOH HOH . F 6 HOH A 205 506 206 HOH HOH . F 6 HOH A 206 507 207 HOH HOH . F 6 HOH A 207 508 208 HOH HOH . F 6 HOH A 208 509 209 HOH HOH . F 6 HOH A 209 510 210 HOH HOH . F 6 HOH A 210 511 211 HOH HOH . F 6 HOH A 211 512 212 HOH HOH . F 6 HOH A 212 513 213 HOH HOH . F 6 HOH A 213 514 214 HOH HOH . F 6 HOH A 214 515 215 HOH HOH . F 6 HOH A 215 516 216 HOH HOH . F 6 HOH A 216 517 217 HOH HOH . F 6 HOH A 217 518 218 HOH HOH . F 6 HOH A 218 519 219 HOH HOH . F 6 HOH A 219 520 220 HOH HOH . F 6 HOH A 220 521 221 HOH HOH . F 6 HOH A 221 522 222 HOH HOH . F 6 HOH A 222 523 223 HOH HOH . F 6 HOH A 223 524 224 HOH HOH . F 6 HOH A 224 525 225 HOH HOH . F 6 HOH A 225 526 226 HOH HOH . F 6 HOH A 226 527 227 HOH HOH . F 6 HOH A 227 528 228 HOH HOH . F 6 HOH A 228 529 229 HOH HOH . F 6 HOH A 229 530 230 HOH HOH . F 6 HOH A 230 531 231 HOH HOH . F 6 HOH A 231 532 232 HOH HOH . F 6 HOH A 232 533 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CYH . . . D 4 -4.421 51.685 43.147 1 18.27 ? C1 CYH 256 A 1 HETATM 2 O O1 CYH . . . D 4 -4.168 50.757 42.172 1 16.35 ? O1 CYH 256 A 1 HETATM 3 C C2 CYH . . . D 4 -3.205 52.115 43.984 1 18.05 ? C2 CYH 256 A 1 HETATM 4 C C3 CYH . . . D 4 -3.516 53.417 44.753 1 18.34 ? C3 CYH 256 A 1 HETATM 5 C C4 CYH . . . D 4 -4.891 53.356 45.424 1 18.61 ? C4 CYH 256 A 1 HETATM 6 C C5 CYH . . . D 4 -6 53.105 44.402 1 19.46 ? C5 CYH 256 A 1 HETATM 7 C C6 CYH . . . D 4 -5.815 51.688 43.814 1 18.54 ? C6 CYH 256 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #