data_1B39
#
_model_server_result.job_id            fU_MDisbxTIGdiwbC0uB_Q 
_model_server_result.datetime_utc      '2024-10-24 04:28:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1b39 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":381}' 
#
_entry.id    1B39 
#
_exptl.entry_id    1B39 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1B39 
_cell.length_a            53.42 
_cell.length_b            71.66 
_cell.length_c            72.52 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1B39 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OD1 ASN 133 A ASN 132 1_555 B MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 A OD2 ASP 146 A ASP 145 1_555 B MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc3 C O1B ATP . A ATP 381 1_555 B MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc4 C O2A ATP . A ATP 381 1_555 B MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc5 C O2G ATP . A ATP 381 1_555 B MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc6 B MG MG . A MG 382 1_555 D O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 76 n n 
PG O2G ATP sing 77 n n 
PG O3G ATP sing 78 n n 
PG O3B ATP sing 79 n n 
O2G HOG2 ATP sing 80 n n 
O3G HOG3 ATP sing 81 n n 
PB O1B ATP doub 82 n n 
PB O2B ATP sing 83 n n 
PB O3B ATP sing 84 n n 
PB O3A ATP sing 85 n n 
O2B HOB2 ATP sing 86 n n 
PA O1A ATP doub 87 n n 
PA O2A ATP sing 88 n n 
PA O3A ATP sing 89 n n 
PA O5' ATP sing 90 n n 
O2A HOA2 ATP sing 91 n n 
O5' C5' ATP sing 92 n n 
C5' C4' ATP sing 93 n n 
C5' "H5'1" ATP sing 94 n n 
C5' "H5'2" ATP sing 95 n n 
C4' O4' ATP sing 96 n n 
C4' C3' ATP sing 97 n n 
C4' H4' ATP sing 98 n n 
O4' C1' ATP sing 99 n n 
C3' O3' ATP sing 100 n n 
C3' C2' ATP sing 101 n n 
C3' H3' ATP sing 102 n n 
O3' HO3' ATP sing 103 n n 
C2' O2' ATP sing 104 n n 
C2' C1' ATP sing 105 n n 
C2' H2' ATP sing 106 n n 
O2' HO2' ATP sing 107 n n 
C1' N9 ATP sing 108 n n 
C1' H1' ATP sing 109 n n 
N9 C8 ATP sing 110 n y 
N9 C4 ATP sing 111 n y 
C8 N7 ATP doub 112 n y 
C8 H8 ATP sing 113 n n 
N7 C5 ATP sing 114 n y 
C5 C6 ATP sing 115 n y 
C5 C4 ATP doub 116 n y 
C6 N6 ATP sing 117 n n 
C6 N1 ATP doub 118 n y 
N6 HN61 ATP sing 119 n n 
N6 HN62 ATP sing 120 n n 
N1 C2 ATP sing 121 n y 
C2 N3 ATP doub 122 n y 
C2 H2 ATP sing 123 n n 
N3 C4 ATP sing 124 n y 
#
_atom_sites.entry_id                     1B39 
_atom_sites.fract_transf_matrix[1][1]    0.018719 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013789 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 382 382 MG MG . 
C 3 ATP A 1 381 381 ATP ATP . 
D 4 HOH A 1 383 1 HOH HOH . 
D 4 HOH A 2 384 2 HOH HOH . 
D 4 HOH A 3 385 3 HOH HOH . 
D 4 HOH A 4 386 4 HOH HOH . 
D 4 HOH A 5 387 5 HOH HOH . 
D 4 HOH A 6 388 6 HOH HOH . 
D 4 HOH A 7 389 7 HOH HOH . 
D 4 HOH A 8 390 8 HOH HOH . 
D 4 HOH A 9 391 9 HOH HOH . 
D 4 HOH A 10 392 10 HOH HOH . 
D 4 HOH A 11 393 11 HOH HOH . 
D 4 HOH A 12 394 12 HOH HOH . 
D 4 HOH A 13 395 13 HOH HOH . 
D 4 HOH A 14 396 14 HOH HOH . 
D 4 HOH A 15 397 15 HOH HOH . 
D 4 HOH A 16 398 16 HOH HOH . 
D 4 HOH A 17 399 17 HOH HOH . 
D 4 HOH A 18 400 18 HOH HOH . 
D 4 HOH A 19 401 19 HOH HOH . 
D 4 HOH A 20 402 20 HOH HOH . 
D 4 HOH A 21 403 21 HOH HOH . 
D 4 HOH A 22 404 22 HOH HOH . 
D 4 HOH A 23 405 23 HOH HOH . 
D 4 HOH A 24 406 24 HOH HOH . 
D 4 HOH A 25 407 25 HOH HOH . 
D 4 HOH A 26 408 26 HOH HOH . 
D 4 HOH A 27 409 27 HOH HOH . 
D 4 HOH A 28 410 28 HOH HOH . 
D 4 HOH A 29 411 29 HOH HOH . 
D 4 HOH A 30 412 30 HOH HOH . 
D 4 HOH A 31 413 31 HOH HOH . 
D 4 HOH A 32 414 32 HOH HOH . 
D 4 HOH A 33 415 33 HOH HOH . 
D 4 HOH A 34 416 34 HOH HOH . 
D 4 HOH A 35 417 35 HOH HOH . 
D 4 HOH A 36 418 36 HOH HOH . 
D 4 HOH A 37 419 37 HOH HOH . 
D 4 HOH A 38 420 38 HOH HOH . 
D 4 HOH A 39 421 39 HOH HOH . 
D 4 HOH A 40 422 40 HOH HOH . 
D 4 HOH A 41 423 41 HOH HOH . 
D 4 HOH A 42 424 42 HOH HOH . 
D 4 HOH A 43 425 43 HOH HOH . 
D 4 HOH A 44 426 44 HOH HOH . 
D 4 HOH A 45 427 45 HOH HOH . 
D 4 HOH A 46 428 46 HOH HOH . 
D 4 HOH A 47 429 47 HOH HOH . 
D 4 HOH A 48 430 48 HOH HOH . 
D 4 HOH A 49 431 49 HOH HOH . 
D 4 HOH A 50 432 50 HOH HOH . 
D 4 HOH A 51 433 51 HOH HOH . 
D 4 HOH A 52 434 52 HOH HOH . 
D 4 HOH A 53 435 53 HOH HOH . 
D 4 HOH A 54 436 54 HOH HOH . 
D 4 HOH A 55 437 55 HOH HOH . 
D 4 HOH A 56 438 56 HOH HOH . 
D 4 HOH A 57 439 57 HOH HOH . 
D 4 HOH A 58 440 58 HOH HOH . 
D 4 HOH A 59 441 59 HOH HOH . 
D 4 HOH A 60 442 60 HOH HOH . 
D 4 HOH A 61 443 61 HOH HOH . 
D 4 HOH A 62 444 62 HOH HOH . 
D 4 HOH A 63 445 63 HOH HOH . 
D 4 HOH A 64 446 64 HOH HOH . 
D 4 HOH A 65 447 65 HOH HOH . 
D 4 HOH A 66 448 66 HOH HOH . 
D 4 HOH A 67 449 67 HOH HOH . 
D 4 HOH A 68 450 68 HOH HOH . 
D 4 HOH A 69 451 69 HOH HOH . 
D 4 HOH A 70 452 70 HOH HOH . 
D 4 HOH A 71 453 71 HOH HOH . 
D 4 HOH A 72 454 72 HOH HOH . 
D 4 HOH A 73 455 73 HOH HOH . 
D 4 HOH A 74 456 74 HOH HOH . 
D 4 HOH A 75 457 75 HOH HOH . 
D 4 HOH A 76 458 76 HOH HOH . 
D 4 HOH A 77 459 77 HOH HOH . 
D 4 HOH A 78 460 80 HOH HOH . 
D 4 HOH A 79 461 81 HOH HOH . 
D 4 HOH A 80 462 82 HOH HOH . 
D 4 HOH A 81 463 83 HOH HOH . 
D 4 HOH A 82 464 84 HOH HOH . 
D 4 HOH A 83 465 85 HOH HOH . 
D 4 HOH A 84 466 86 HOH HOH . 
D 4 HOH A 85 467 88 HOH HOH . 
D 4 HOH A 86 468 89 HOH HOH . 
D 4 HOH A 87 469 91 HOH HOH . 
D 4 HOH A 88 470 92 HOH HOH . 
D 4 HOH A 89 471 93 HOH HOH . 
D 4 HOH A 90 472 94 HOH HOH . 
D 4 HOH A 91 473 95 HOH HOH . 
D 4 HOH A 92 474 96 HOH HOH . 
D 4 HOH A 93 475 97 HOH HOH . 
D 4 HOH A 94 476 98 HOH HOH . 
D 4 HOH A 95 477 99 HOH HOH . 
D 4 HOH A 96 478 100 HOH HOH . 
D 4 HOH A 97 479 101 HOH HOH . 
D 4 HOH A 98 480 102 HOH HOH . 
D 4 HOH A 99 481 103 HOH HOH . 
D 4 HOH A 100 482 104 HOH HOH . 
D 4 HOH A 101 483 105 HOH HOH . 
D 4 HOH A 102 484 106 HOH HOH . 
D 4 HOH A 103 485 107 HOH HOH . 
D 4 HOH A 104 486 108 HOH HOH . 
D 4 HOH A 105 487 109 HOH HOH . 
D 4 HOH A 106 488 110 HOH HOH . 
D 4 HOH A 107 489 111 HOH HOH . 
D 4 HOH A 108 490 112 HOH HOH . 
D 4 HOH A 109 491 113 HOH HOH . 
D 4 HOH A 110 492 114 HOH HOH . 
D 4 HOH A 111 493 116 HOH HOH . 
D 4 HOH A 112 494 117 HOH HOH . 
D 4 HOH A 113 495 118 HOH HOH . 
D 4 HOH A 114 496 119 HOH HOH . 
D 4 HOH A 115 497 120 HOH HOH . 
D 4 HOH A 116 498 121 HOH HOH . 
D 4 HOH A 117 499 122 HOH HOH . 
D 4 HOH A 118 500 123 HOH HOH . 
D 4 HOH A 119 501 124 HOH HOH . 
D 4 HOH A 120 502 125 HOH HOH . 
D 4 HOH A 121 503 126 HOH HOH . 
D 4 HOH A 122 504 127 HOH HOH . 
D 4 HOH A 123 505 128 HOH HOH . 
D 4 HOH A 124 506 129 HOH HOH . 
D 4 HOH A 125 507 130 HOH HOH . 
D 4 HOH A 126 508 131 HOH HOH . 
D 4 HOH A 127 509 132 HOH HOH . 
D 4 HOH A 128 510 133 HOH HOH . 
D 4 HOH A 129 511 134 HOH HOH . 
D 4 HOH A 130 512 135 HOH HOH . 
D 4 HOH A 131 513 136 HOH HOH . 
D 4 HOH A 132 514 137 HOH HOH . 
D 4 HOH A 133 515 138 HOH HOH . 
D 4 HOH A 134 516 139 HOH HOH . 
D 4 HOH A 135 517 140 HOH HOH . 
D 4 HOH A 136 518 141 HOH HOH . 
D 4 HOH A 137 519 142 HOH HOH . 
D 4 HOH A 138 520 143 HOH HOH . 
D 4 HOH A 139 521 144 HOH HOH . 
D 4 HOH A 140 522 145 HOH HOH . 
D 4 HOH A 141 523 146 HOH HOH . 
D 4 HOH A 142 524 147 HOH HOH . 
D 4 HOH A 143 525 148 HOH HOH . 
D 4 HOH A 144 526 149 HOH HOH . 
D 4 HOH A 145 527 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 -3.806 25.217 15.796 1 49.04 ? PG ATP 381 A 1 
HETATM 2 O O1G ATP . . . C 3 -4.147 25.277 17.223 1 49 ? O1G ATP 381 A 1 
HETATM 3 O O2G ATP . . . C 3 -3.514 26.569 15.259 1 50.27 ? O2G ATP 381 A 1 
HETATM 4 O O3G ATP . . . C 3 -4.998 24.742 15.025 1 51.63 ? O3G ATP 381 A 1 
HETATM 5 P PB ATP . . . C 3 -1.436 24.535 14.401 1 45.09 ? PB ATP 381 A 1 
HETATM 6 O O1B ATP . . . C 3 -0.793 25.836 14.439 1 44.57 ? O1B ATP 381 A 1 
HETATM 7 O O2B ATP . . . C 3 -0.434 23.44 14.436 1 44.91 ? O2B ATP 381 A 1 
HETATM 8 O O3B ATP . . . C 3 -2.579 24.269 15.473 1 46.88 ? O3B ATP 381 A 1 
HETATM 9 P PA ATP . . . C 3 -2.802 25.365 11.864 1 46.91 ? PA ATP 381 A 1 
HETATM 10 O O1A ATP . . . C 3 -3.884 24.619 11.123 1 45.2 ? O1A ATP 381 A 1 
HETATM 11 O O2A ATP . . . C 3 -3.419 26.609 12.377 1 44.42 ? O2A ATP 381 A 1 
HETATM 12 O O3A ATP . . . C 3 -2.263 24.357 13.015 1 46.05 ? O3A ATP 381 A 1 
HETATM 13 O O5' ATP . . . C 3 -1.554 25.63 10.942 1 45.44 ? O5' ATP 381 A 1 
HETATM 14 C C5' ATP . . . C 3 -1.296 24.51 10.035 1 46.44 ? C5' ATP 381 A 1 
HETATM 15 C C4' ATP . . . C 3 0.148 24.648 9.554 1 47.66 ? C4' ATP 381 A 1 
HETATM 16 O O4' ATP . . . C 3 0.247 25.795 8.69 1 46.1 ? O4' ATP 381 A 1 
HETATM 17 C C3' ATP . . . C 3 1.082 24.89 10.75 1 48.4 ? C3' ATP 381 A 1 
HETATM 18 O O3' ATP . . . C 3 2.358 24.311 10.322 1 51.24 ? O3' ATP 381 A 1 
HETATM 19 C C2' ATP . . . C 3 1.202 26.458 10.68 1 49.04 ? C2' ATP 381 A 1 
HETATM 20 O O2' ATP . . . C 3 2.449 26.818 11.324 1 49.93 ? O2' ATP 381 A 1 
HETATM 21 C C1' ATP . . . C 3 1.196 26.716 9.144 1 46.04 ? C1' ATP 381 A 1 
HETATM 22 N N9 ATP . . . C 3 0.588 27.996 8.742 1 44.38 ? N9 ATP 381 A 1 
HETATM 23 C C8 ATP . . . C 3 -0.427 28.592 9.427 1 43.54 ? C8 ATP 381 A 1 
HETATM 24 N N7 ATP . . . C 3 -0.608 29.839 9.246 1 41.55 ? N7 ATP 381 A 1 
HETATM 25 C C5 ATP . . . C 3 0.298 30.16 8.35 1 38.59 ? C5 ATP 381 A 1 
HETATM 26 C C6 ATP . . . C 3 0.559 31.388 7.783 1 36.1 ? C6 ATP 381 A 1 
HETATM 27 N N6 ATP . . . C 3 -0.055 32.538 8.02 1 32.35 ? N6 ATP 381 A 1 
HETATM 28 N N1 ATP . . . C 3 1.582 31.433 6.899 1 33.04 ? N1 ATP 381 A 1 
HETATM 29 C C2 ATP . . . C 3 2.291 30.294 6.618 1 36.11 ? C2 ATP 381 A 1 
HETATM 30 N N3 ATP . . . C 3 2.11 29.077 7.112 1 38.46 ? N3 ATP 381 A 1 
HETATM 31 C C4 ATP . . . C 3 1.076 29.074 7.991 1 41.6 ? C4 ATP 381 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#