data_1B3A # _model_server_result.job_id B_yKMaVtrBY8EshVNtUOAg _model_server_result.datetime_utc '2024-10-12 12:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1}' # _entry.id 1B3A # _exptl.entry_id 1B3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 145.199 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTYLOXYAMINO-ACETALDEHYDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B3A _cell.length_a 23.635 _cell.length_b 56.307 _cell.length_c 94.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 10 1_555 A SG CYS 33 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 10 A CYS 11 1_555 A SG CYS 49 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 B SG CYS 9 B CYS 10 1_555 B SG CYS 33 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 10 B CYS 11 1_555 B SG CYS 49 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 F C1 AOP . A AOP 1 1_555 A N PRO 1 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 H C1 AOP . B AOP 1 1_555 B N PRO 1 B PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C7 H15 N O2' _chem_comp.formula_weight 145.199 _chem_comp.id AOP _chem_comp.mon_nstd_flag . _chem_comp.name PENTYLOXYAMINO-ACETALDEHYDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 AOP doub 13 n n C1 C2 AOP sing 14 n n C1 H1 AOP sing 15 n n C2 N3 AOP sing 16 n n C2 H21 AOP sing 17 n n C2 H22 AOP sing 18 n n N3 O4 AOP sing 19 n n N3 HN3 AOP sing 20 n n O4 C5 AOP sing 21 n n C5 C6 AOP sing 22 n n C5 H51 AOP sing 23 n n C5 H52 AOP sing 24 n n C6 C7 AOP sing 25 n n C6 H61 AOP sing 26 n n C6 H62 AOP sing 27 n n C7 C8 AOP sing 28 n n C7 H71 AOP sing 29 n n C7 H72 AOP sing 30 n n C8 C9 AOP sing 31 n n C8 H81 AOP sing 32 n n C8 H82 AOP sing 33 n n C9 H91 AOP sing 34 n n C9 H92 AOP sing 35 n n C9 H93 AOP sing 36 n n # _atom_sites.entry_id 1B3A _atom_sites.fract_transf_matrix[1][1] 0.04231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 197 197 SO4 SO4 . D 2 SO4 A 1 196 196 SO4 SO4 . E 2 SO4 A 1 198 198 SO4 SO4 . F 3 AOP A 1 1 1 AOP AOP . G 2 SO4 B 1 199 199 SO4 SO4 . H 3 AOP B 1 1 1 AOP AOP . I 4 HOH A 1 1001 1001 HOH HOH . I 4 HOH A 2 1002 1002 HOH HOH . I 4 HOH A 3 1003 1003 HOH HOH . I 4 HOH A 4 1007 1007 HOH HOH . I 4 HOH A 5 1009 1009 HOH HOH . I 4 HOH A 6 1010 1010 HOH HOH . I 4 HOH A 7 1011 1011 HOH HOH . I 4 HOH A 8 1012 1012 HOH HOH . I 4 HOH A 9 1013 1013 HOH HOH . I 4 HOH A 10 1016 1016 HOH HOH . I 4 HOH A 11 1018 1018 HOH HOH . I 4 HOH A 12 1020 1020 HOH HOH . I 4 HOH A 13 1021 1021 HOH HOH . I 4 HOH A 14 1023 1023 HOH HOH . I 4 HOH A 15 1024 1024 HOH HOH . I 4 HOH A 16 1025 1025 HOH HOH . I 4 HOH A 17 1027 1027 HOH HOH . I 4 HOH A 18 1028 1028 HOH HOH . I 4 HOH A 19 1030 1030 HOH HOH . I 4 HOH A 20 1031 1031 HOH HOH . I 4 HOH A 21 1032 1032 HOH HOH . I 4 HOH A 22 1034 1034 HOH HOH . I 4 HOH A 23 1036 1036 HOH HOH . I 4 HOH A 24 1037 1037 HOH HOH . I 4 HOH A 25 1038 1038 HOH HOH . I 4 HOH A 26 1039 1039 HOH HOH . I 4 HOH A 27 1041 1041 HOH HOH . I 4 HOH A 28 1043 1043 HOH HOH . I 4 HOH A 29 1044 1044 HOH HOH . I 4 HOH A 30 1045 1045 HOH HOH . I 4 HOH A 31 1048 1048 HOH HOH . I 4 HOH A 32 1049 1049 HOH HOH . I 4 HOH A 33 1054 1054 HOH HOH . I 4 HOH A 34 1055 1055 HOH HOH . I 4 HOH A 35 1058 1058 HOH HOH . I 4 HOH A 36 1060 1060 HOH HOH . I 4 HOH A 37 1065 1065 HOH HOH . I 4 HOH A 38 1068 1068 HOH HOH . I 4 HOH A 39 1069 1069 HOH HOH . I 4 HOH A 40 1073 1073 HOH HOH . I 4 HOH A 41 1078 1078 HOH HOH . I 4 HOH A 42 1082 1082 HOH HOH . I 4 HOH A 43 1083 1083 HOH HOH . I 4 HOH A 44 1085 1085 HOH HOH . I 4 HOH A 45 1086 1086 HOH HOH . I 4 HOH A 46 1087 1087 HOH HOH . I 4 HOH A 47 1089 1089 HOH HOH . I 4 HOH A 48 1090 1090 HOH HOH . I 4 HOH A 49 1091 1091 HOH HOH . I 4 HOH A 50 1096 1096 HOH HOH . I 4 HOH A 51 1097 1097 HOH HOH . I 4 HOH A 52 1098 1098 HOH HOH . I 4 HOH A 53 1099 1099 HOH HOH . I 4 HOH A 54 1100 1100 HOH HOH . I 4 HOH A 55 1101 1101 HOH HOH . I 4 HOH A 56 1102 1102 HOH HOH . I 4 HOH A 57 1103 1103 HOH HOH . I 4 HOH A 58 1104 1104 HOH HOH . I 4 HOH A 59 1107 1107 HOH HOH . I 4 HOH A 60 1108 1108 HOH HOH . I 4 HOH A 61 1109 1109 HOH HOH . I 4 HOH A 62 1110 1110 HOH HOH . I 4 HOH A 63 1118 1118 HOH HOH . I 4 HOH A 64 1119 1119 HOH HOH . I 4 HOH A 65 1122 1122 HOH HOH . I 4 HOH A 66 1123 1123 HOH HOH . I 4 HOH A 67 1124 1124 HOH HOH . I 4 HOH A 68 1125 1125 HOH HOH . I 4 HOH A 69 1127 1127 HOH HOH . I 4 HOH A 70 1129 1129 HOH HOH . I 4 HOH A 71 1131 1131 HOH HOH . I 4 HOH A 72 1135 1135 HOH HOH . I 4 HOH A 73 1136 1136 HOH HOH . I 4 HOH A 74 1137 1137 HOH HOH . I 4 HOH A 75 1138 1138 HOH HOH . I 4 HOH A 76 1139 1139 HOH HOH . I 4 HOH A 77 1142 1142 HOH HOH . I 4 HOH A 78 1143 1143 HOH HOH . I 4 HOH A 79 1144 1144 HOH HOH . I 4 HOH A 80 1147 1147 HOH HOH . I 4 HOH A 81 1148 1148 HOH HOH . I 4 HOH A 82 1150 1150 HOH HOH . I 4 HOH A 83 1156 1156 HOH HOH . I 4 HOH A 84 1158 1158 HOH HOH . I 4 HOH A 85 1160 1160 HOH HOH . I 4 HOH A 86 1161 1161 HOH HOH . I 4 HOH A 87 1164 1164 HOH HOH . I 4 HOH A 88 1165 1165 HOH HOH . I 4 HOH A 89 1166 1166 HOH HOH . I 4 HOH A 90 1168 1168 HOH HOH . I 4 HOH A 91 1169 1169 HOH HOH . I 4 HOH A 92 1172 1172 HOH HOH . I 4 HOH A 93 1173 1173 HOH HOH . I 4 HOH A 94 1174 1174 HOH HOH . I 4 HOH A 95 1175 1175 HOH HOH . I 4 HOH A 96 1176 1176 HOH HOH . I 4 HOH A 97 1177 1177 HOH HOH . I 4 HOH A 98 1178 1178 HOH HOH . I 4 HOH A 99 1179 1179 HOH HOH . I 4 HOH A 100 1181 1181 HOH HOH . I 4 HOH A 101 1182 1182 HOH HOH . I 4 HOH A 102 1183 1183 HOH HOH . I 4 HOH A 103 1184 1184 HOH HOH . I 4 HOH A 104 1186 1186 HOH HOH . I 4 HOH A 105 1190 1190 HOH HOH . I 4 HOH A 106 1193 1193 HOH HOH . I 4 HOH A 107 1194 1194 HOH HOH . I 4 HOH A 108 1199 1199 HOH HOH . I 4 HOH A 109 1200 1200 HOH HOH . I 4 HOH A 110 1201 1201 HOH HOH . I 4 HOH A 111 1202 1202 HOH HOH . I 4 HOH A 112 1203 1203 HOH HOH . I 4 HOH A 113 1206 1206 HOH HOH . I 4 HOH A 114 1207 1207 HOH HOH . I 4 HOH A 115 1211 1211 HOH HOH . I 4 HOH A 116 1215 1215 HOH HOH . I 4 HOH A 117 1216 1216 HOH HOH . I 4 HOH A 118 1219 1219 HOH HOH . I 4 HOH A 119 1220 1220 HOH HOH . I 4 HOH A 120 1222 1222 HOH HOH . J 4 HOH B 1 1004 1004 HOH HOH . J 4 HOH B 2 1005 1005 HOH HOH . J 4 HOH B 3 1006 1006 HOH HOH . J 4 HOH B 4 1008 1008 HOH HOH . J 4 HOH B 5 1014 1014 HOH HOH . J 4 HOH B 6 1015 1015 HOH HOH . J 4 HOH B 7 1017 1017 HOH HOH . J 4 HOH B 8 1019 1019 HOH HOH . J 4 HOH B 9 1022 1022 HOH HOH . J 4 HOH B 10 1026 1026 HOH HOH . J 4 HOH B 11 1029 1029 HOH HOH . J 4 HOH B 12 1033 1033 HOH HOH . J 4 HOH B 13 1035 1035 HOH HOH . J 4 HOH B 14 1040 1040 HOH HOH . J 4 HOH B 15 1042 1042 HOH HOH . J 4 HOH B 16 1046 1046 HOH HOH . J 4 HOH B 17 1047 1047 HOH HOH . J 4 HOH B 18 1050 1050 HOH HOH . J 4 HOH B 19 1051 1051 HOH HOH . J 4 HOH B 20 1052 1052 HOH HOH . J 4 HOH B 21 1053 1053 HOH HOH . J 4 HOH B 22 1056 1056 HOH HOH . J 4 HOH B 23 1057 1057 HOH HOH . J 4 HOH B 24 1059 1059 HOH HOH . J 4 HOH B 25 1061 1061 HOH HOH . J 4 HOH B 26 1062 1062 HOH HOH . J 4 HOH B 27 1063 1063 HOH HOH . J 4 HOH B 28 1064 1064 HOH HOH . J 4 HOH B 29 1066 1066 HOH HOH . J 4 HOH B 30 1067 1067 HOH HOH . J 4 HOH B 31 1070 1070 HOH HOH . J 4 HOH B 32 1071 1071 HOH HOH . J 4 HOH B 33 1072 1072 HOH HOH . J 4 HOH B 34 1074 1074 HOH HOH . J 4 HOH B 35 1075 1075 HOH HOH . J 4 HOH B 36 1076 1076 HOH HOH . J 4 HOH B 37 1077 1077 HOH HOH . J 4 HOH B 38 1079 1079 HOH HOH . J 4 HOH B 39 1080 1080 HOH HOH . J 4 HOH B 40 1081 1081 HOH HOH . J 4 HOH B 41 1084 1084 HOH HOH . J 4 HOH B 42 1088 1088 HOH HOH . J 4 HOH B 43 1092 1092 HOH HOH . J 4 HOH B 44 1093 1093 HOH HOH . J 4 HOH B 45 1094 1094 HOH HOH . J 4 HOH B 46 1095 1095 HOH HOH . J 4 HOH B 47 1105 1105 HOH HOH . J 4 HOH B 48 1106 1106 HOH HOH . J 4 HOH B 49 1111 1111 HOH HOH . J 4 HOH B 50 1112 1112 HOH HOH . J 4 HOH B 51 1113 1113 HOH HOH . J 4 HOH B 52 1114 1114 HOH HOH . J 4 HOH B 53 1115 1115 HOH HOH . J 4 HOH B 54 1116 1116 HOH HOH . J 4 HOH B 55 1117 1117 HOH HOH . J 4 HOH B 56 1120 1120 HOH HOH . J 4 HOH B 57 1121 1121 HOH HOH . J 4 HOH B 58 1126 1126 HOH HOH . J 4 HOH B 59 1128 1128 HOH HOH . J 4 HOH B 60 1130 1130 HOH HOH . J 4 HOH B 61 1132 1132 HOH HOH . J 4 HOH B 62 1133 1133 HOH HOH . J 4 HOH B 63 1134 1134 HOH HOH . J 4 HOH B 64 1140 1140 HOH HOH . J 4 HOH B 65 1141 1141 HOH HOH . J 4 HOH B 66 1145 1145 HOH HOH . J 4 HOH B 67 1146 1146 HOH HOH . J 4 HOH B 68 1149 1149 HOH HOH . J 4 HOH B 69 1151 1151 HOH HOH . J 4 HOH B 70 1152 1152 HOH HOH . J 4 HOH B 71 1153 1153 HOH HOH . J 4 HOH B 72 1154 1154 HOH HOH . J 4 HOH B 73 1155 1155 HOH HOH . J 4 HOH B 74 1157 1157 HOH HOH . J 4 HOH B 75 1159 1159 HOH HOH . J 4 HOH B 76 1162 1162 HOH HOH . J 4 HOH B 77 1163 1163 HOH HOH . J 4 HOH B 78 1167 1167 HOH HOH . J 4 HOH B 79 1170 1170 HOH HOH . J 4 HOH B 80 1171 1171 HOH HOH . J 4 HOH B 81 1180 1180 HOH HOH . J 4 HOH B 82 1185 1185 HOH HOH . J 4 HOH B 83 1187 1187 HOH HOH . J 4 HOH B 84 1188 1188 HOH HOH . J 4 HOH B 85 1189 1189 HOH HOH . J 4 HOH B 86 1191 1191 HOH HOH . J 4 HOH B 87 1192 1192 HOH HOH . J 4 HOH B 88 1195 1195 HOH HOH . J 4 HOH B 89 1196 1196 HOH HOH . J 4 HOH B 90 1197 1197 HOH HOH . J 4 HOH B 91 1198 1198 HOH HOH . J 4 HOH B 92 1204 1204 HOH HOH . J 4 HOH B 93 1205 1205 HOH HOH . J 4 HOH B 94 1208 1208 HOH HOH . J 4 HOH B 95 1209 1209 HOH HOH . J 4 HOH B 96 1210 1210 HOH HOH . J 4 HOH B 97 1212 1212 HOH HOH . J 4 HOH B 98 1213 1213 HOH HOH . J 4 HOH B 99 1214 1214 HOH HOH . J 4 HOH B 100 1217 1217 HOH HOH . J 4 HOH B 101 1218 1218 HOH HOH . J 4 HOH B 102 1221 1221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 AOP . . . H 3 6.932 32.664 21.488 1 45.83 ? O1 AOP 1 B 1 HETATM 2 C C1 AOP . . . H 3 7.293 33.858 21.538 1 74.65 ? C1 AOP 1 B 1 HETATM 3 C C2 AOP . . . H 3 8.75 34.323 21.451 1 85.23 ? C2 AOP 1 B 1 HETATM 4 N N3 AOP . . . H 3 9.764 33.547 21.374 1 94 ? N3 AOP 1 B 1 HETATM 5 O O4 AOP . . . H 3 10.991 34.021 21.337 1 101.91 ? O4 AOP 1 B 1 HETATM 6 C C5 AOP . . . H 3 12.136 33.145 21.235 1 104.19 ? C5 AOP 1 B 1 HETATM 7 C C6 AOP . . . H 3 13.437 33.951 21.348 1 102.16 ? C6 AOP 1 B 1 HETATM 8 C C7 AOP . . . H 3 13.949 34.383 19.966 1 100.5 ? C7 AOP 1 B 1 HETATM 9 C C8 AOP . . . H 3 15.467 34.512 19.97 1 101.05 ? C8 AOP 1 B 1 HETATM 10 C C9 AOP . . . H 3 16.145 33.163 19.818 1 97.12 ? C9 AOP 1 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #