data_1B3N # _model_server_result.job_id U5CpdSM4jK2jI4DJKjZ2-Q _model_server_result.datetime_utc '2024-11-24 17:27:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":413}' # _entry.id 1B3N # _exptl.entry_id 1B3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1B3N _cell.length_a 76.394 _cell.length_b 76.394 _cell.length_c 147.675 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 163 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 163 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id CER _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CER _struct_conn.ptnr2_auth_seq_id 413 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.847 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H19 N O3' _chem_comp.formula_weight 225.284 _chem_comp.id CER _chem_comp.mon_nstd_flag . _chem_comp.name '(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CERULENIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 CER sing 70 n n C1 C2 CER sing 71 n n C1 O2 CER doub 72 n n N1 HN11 CER sing 73 n n N1 HN12 CER sing 74 n n O1 C4 CER doub 75 n n C2 C3 CER sing 76 n n C2 H21 CER sing 77 n n C2 H22 CER sing 78 n n C3 O3 CER sing 79 n n C3 C4 CER sing 80 n n C3 H31 CER sing 81 n n O3 HO3 CER sing 82 n n C4 C5 CER sing 83 n n C5 C6 CER sing 84 n n C5 H51 CER sing 85 n n C5 H52 CER sing 86 n n C6 C7 CER sing 87 n n C6 H61 CER sing 88 n n C6 H62 CER sing 89 n n C7 C8 CER doub 90 e n C7 H71 CER sing 91 n n C8 C9 CER sing 92 n n C8 H81 CER sing 93 n n C9 C10 CER sing 94 n n C9 H91 CER sing 95 n n C9 H92 CER sing 96 n n C10 C11 CER doub 97 e n C10 H101 CER sing 98 n n C11 C12 CER sing 99 n n C11 H111 CER sing 100 n n C12 H121 CER sing 101 n n C12 H122 CER sing 102 n n C12 H123 CER sing 103 n n # _atom_sites.entry_id 1B3N _atom_sites.fract_transf_matrix[1][1] 0.01309 _atom_sites.fract_transf_matrix[1][2] 0.007557 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CER A 1 413 413 CER CER . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 507 507 HOH HOH . C 3 HOH A 7 508 508 HOH HOH . C 3 HOH A 8 511 511 HOH HOH . C 3 HOH A 9 512 512 HOH HOH . C 3 HOH A 10 516 516 HOH HOH . C 3 HOH A 11 520 520 HOH HOH . C 3 HOH A 12 600 600 HOH HOH . C 3 HOH A 13 601 601 HOH HOH . C 3 HOH A 14 602 602 HOH HOH . C 3 HOH A 15 604 604 HOH HOH . C 3 HOH A 16 605 605 HOH HOH . C 3 HOH A 17 606 606 HOH HOH . C 3 HOH A 18 607 607 HOH HOH . C 3 HOH A 19 608 608 HOH HOH . C 3 HOH A 20 609 609 HOH HOH . C 3 HOH A 21 611 611 HOH HOH . C 3 HOH A 22 612 612 HOH HOH . C 3 HOH A 23 613 613 HOH HOH . C 3 HOH A 24 614 614 HOH HOH . C 3 HOH A 25 615 615 HOH HOH . C 3 HOH A 26 616 616 HOH HOH . C 3 HOH A 27 618 618 HOH HOH . C 3 HOH A 28 620 620 HOH HOH . C 3 HOH A 29 621 621 HOH HOH . C 3 HOH A 30 622 622 HOH HOH . C 3 HOH A 31 623 623 HOH HOH . C 3 HOH A 32 624 624 HOH HOH . C 3 HOH A 33 625 625 HOH HOH . C 3 HOH A 34 626 626 HOH HOH . C 3 HOH A 35 627 627 HOH HOH . C 3 HOH A 36 628 628 HOH HOH . C 3 HOH A 37 629 629 HOH HOH . C 3 HOH A 38 630 630 HOH HOH . C 3 HOH A 39 631 631 HOH HOH . C 3 HOH A 40 632 632 HOH HOH . C 3 HOH A 41 634 634 HOH HOH . C 3 HOH A 42 635 635 HOH HOH . C 3 HOH A 43 636 636 HOH HOH . C 3 HOH A 44 637 637 HOH HOH . C 3 HOH A 45 638 638 HOH HOH . C 3 HOH A 46 639 639 HOH HOH . C 3 HOH A 47 640 640 HOH HOH . C 3 HOH A 48 641 641 HOH HOH . C 3 HOH A 49 642 642 HOH HOH . C 3 HOH A 50 643 643 HOH HOH . C 3 HOH A 51 644 644 HOH HOH . C 3 HOH A 52 645 645 HOH HOH . C 3 HOH A 53 646 646 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CER . . . B 2 16.27 27.008 14.939 1 42.62 ? C1 CER 413 A 1 HETATM 2 N N1 CER . . . B 2 15.405 28.001 15.549 1 43.68 ? N1 CER 413 A 1 HETATM 3 O O1 CER . . . B 2 16.728 30.271 11.664 1 41.32 ? O1 CER 413 A 1 HETATM 4 C C2 CER . . . B 2 16.925 27.331 13.561 1 38.73 ? C2 CER 413 A 1 HETATM 5 O O2 CER . . . B 2 16.493 25.921 15.481 1 43.3 ? O2 CER 413 A 1 HETATM 6 C C3 CER . . . B 2 15.986 28.354 12.88 1 40.31 ? C3 CER 413 A 1 HETATM 7 O O3 CER . . . B 2 14.813 27.662 12.446 1 40.48 ? O3 CER 413 A 1 HETATM 8 C C4 CER . . . B 2 16.661 29.036 11.703 1 40.39 ? C4 CER 413 A 1 HETATM 9 C C5 CER . . . B 2 17.226 28.267 10.507 1 40.11 ? C5 CER 413 A 1 HETATM 10 C C6 CER . . . B 2 17.265 29.232 9.297 1 39.9 ? C6 CER 413 A 1 HETATM 11 C C7 CER . . . B 2 18.711 29.652 9.103 1 40.02 ? C7 CER 413 A 1 HETATM 12 C C8 CER . . . B 2 19.383 29.404 7.982 1 39.25 ? C8 CER 413 A 1 HETATM 13 C C9 CER . . . B 2 20.833 29.912 7.969 1 39.77 ? C9 CER 413 A 1 HETATM 14 C C10 CER . . . B 2 20.766 31.443 7.867 1 39.44 ? C10 CER 413 A 1 HETATM 15 C C11 CER . . . B 2 21.59 32.16 8.641 1 39.99 ? C11 CER 413 A 1 HETATM 16 C C12 CER . . . B 2 21.55 33.685 8.529 1 40.81 ? C12 CER 413 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #