data_1B3O # _model_server_result.job_id RD2x-hdEm2uXifsan2X60Q _model_server_result.datetime_utc '2024-10-18 16:23:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1B3O # _exptl.entry_id 1B3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 716.348 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SELENAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B3O _cell.length_a 142.26 _cell.length_b 142.26 _cell.length_c 174.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,V 1 1,2,3,4 B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,W 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 331 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 331 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C6 _struct_conn.ptnr2_label_comp_id CPR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CPR _struct_conn.ptnr2_auth_seq_id 631 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.774 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H25 N7 O14 P2 Se' _chem_comp.formula_weight 716.348 _chem_comp.id SAE _chem_comp.mon_nstd_flag . _chem_comp.name 'SELENAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A SAE doub 315 n n PA O2A SAE sing 316 n n PA O5B SAE sing 317 n n PA O3 SAE sing 318 n n O2A HOA2 SAE sing 319 n n O5B C5B SAE sing 320 n n C5B C4B SAE sing 321 n n C5B H51A SAE sing 322 n n C5B H52A SAE sing 323 n n C4B O4B SAE sing 324 n n C4B C3B SAE sing 325 n n C4B H4B SAE sing 326 n n O4B C1B SAE sing 327 n n C3B O3B SAE sing 328 n n C3B C2B SAE sing 329 n n C3B H3B SAE sing 330 n n O3B HO3A SAE sing 331 n n C2B O2B SAE sing 332 n n C2B C1B SAE sing 333 n n C2B H2B SAE sing 334 n n O2B HO2A SAE sing 335 n n C1B N9A SAE sing 336 n n C1B H1B SAE sing 337 n n N9A C8A SAE sing 338 n y N9A C4A SAE sing 339 n y C8A N7A SAE doub 340 n y C8A H8A SAE sing 341 n n N7A C5A SAE sing 342 n y C5A C6A SAE sing 343 n y C5A C4A SAE doub 344 n y C6A N6A SAE sing 345 n n C6A N1A SAE doub 346 n y N6A H61A SAE sing 347 n n N6A H62A SAE sing 348 n n N1A C2A SAE sing 349 n y C2A N3A SAE doub 350 n y C2A H2A SAE sing 351 n n N3A C4A SAE sing 352 n y O3 PN SAE sing 353 n n PN O1N SAE doub 354 n n PN O2N SAE sing 355 n n PN O5D SAE sing 356 n n O2N HON2 SAE sing 357 n n O5D C5D SAE sing 358 n n C5D C4D SAE sing 359 n n C5D H51N SAE sing 360 n n C5D H52N SAE sing 361 n n C4D O4D SAE sing 362 n n C4D C3D SAE sing 363 n n C4D H4D SAE sing 364 n n O4D C1D SAE sing 365 n n C3D O3D SAE sing 366 n n C3D C2D SAE sing 367 n n C3D H3D SAE sing 368 n n O3D HO3N SAE sing 369 n n C2D O2D SAE sing 370 n n C2D C1D SAE sing 371 n n C2D H2D SAE sing 372 n n O2D HO2N SAE sing 373 n n C1D C2N SAE sing 374 n n C1D H1D SAE sing 375 n n C2N N3N SAE doub 376 n y C2N SE1N SAE sing 377 n y N3N C4N SAE sing 378 n y C4N C5N SAE doub 379 n y C4N C6N SAE sing 380 n n C5N SE1N SAE sing 381 n y C5N HN5 SAE sing 382 n n C6N O6N SAE doub 383 n n C6N N6N SAE sing 384 n n N6N H61N SAE sing 385 n n N6N H62N SAE sing 386 n n # _atom_sites.entry_id 1B3O _atom_sites.fract_transf_matrix[1][1] 0.007029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CPR A 1 631 631 CPR IMP . D 3 SAE A 1 600 600 SAE SAD . E 2 CPR B 1 631 631 CPR IMP . F 3 SAE B 1 601 600 SAE SAD . G 4 UNX B 1 632 1 UNX ALA . H 4 UNX B 1 633 2 UNX ALA . I 4 UNX B 1 634 3 UNX ALA . J 4 UNX B 1 635 4 UNX ALA . K 4 UNX B 1 636 5 UNX ALA . L 4 UNX B 1 637 6 UNX ALA . M 4 UNX B 1 638 7 UNX ALA . N 4 UNX B 1 639 8 UNX ALA . O 4 UNX B 1 640 9 UNX ALA . P 4 UNX B 1 641 10 UNX ALA . Q 4 UNX B 1 642 1 UNX ALA . R 4 UNX B 1 643 2 UNX ALA . S 4 UNX B 1 644 3 UNX ALA . T 4 UNX B 1 645 4 UNX ALA . U 4 UNX B 1 646 5 UNX ALA . V 5 HOH A 1 632 2 HOH HOH . V 5 HOH A 2 633 3 HOH HOH . V 5 HOH A 3 634 4 HOH HOH . V 5 HOH A 4 635 10 HOH HOH . V 5 HOH A 5 636 14 HOH HOH . V 5 HOH A 6 637 15 HOH HOH . V 5 HOH A 7 638 18 HOH HOH . V 5 HOH A 8 639 24 HOH HOH . V 5 HOH A 9 640 25 HOH HOH . V 5 HOH A 10 641 27 HOH HOH . V 5 HOH A 11 642 30 HOH HOH . W 5 HOH B 1 647 1 HOH HOH . W 5 HOH B 2 648 5 HOH HOH . W 5 HOH B 3 649 6 HOH HOH . W 5 HOH B 4 650 7 HOH HOH . W 5 HOH B 5 651 8 HOH HOH . W 5 HOH B 6 652 9 HOH HOH . W 5 HOH B 7 653 11 HOH HOH . W 5 HOH B 8 654 12 HOH HOH . W 5 HOH B 9 655 13 HOH HOH . W 5 HOH B 10 656 16 HOH HOH . W 5 HOH B 11 657 17 HOH HOH . W 5 HOH B 12 658 19 HOH HOH . W 5 HOH B 13 659 20 HOH HOH . W 5 HOH B 14 660 21 HOH HOH . W 5 HOH B 15 661 22 HOH HOH . W 5 HOH B 16 662 23 HOH HOH . W 5 HOH B 17 663 26 HOH HOH . W 5 HOH B 18 664 28 HOH HOH . W 5 HOH B 19 665 29 HOH HOH . W 5 HOH B 20 666 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA SAE . . . D 3 -17.24 29.343 0.208 0.75 71.74 ? PA SAE 600 A 1 HETATM 2 O O1A SAE . . . D 3 -16.989 29.886 1.561 0.75 71.05 ? O1A SAE 600 A 1 HETATM 3 O O2A SAE . . . D 3 -16.867 30.141 -0.982 0.75 69.96 ? O2A SAE 600 A 1 HETATM 4 O O5B SAE . . . D 3 -18.786 28.93 0.111 0.75 67.36 ? O5B SAE 600 A 1 HETATM 5 C C5B SAE . . . D 3 -19.287 28.193 -1.021 0.75 63.65 ? C5B SAE 600 A 1 HETATM 6 C C4B SAE . . . D 3 -20.788 28.061 -0.876 0.75 59.82 ? C4B SAE 600 A 1 HETATM 7 O O4B SAE . . . D 3 -21.005 29.513 -0.752 0.75 59.76 ? O4B SAE 600 A 1 HETATM 8 C C3B SAE . . . D 3 -21.27 27.542 -2.205 0.75 59.43 ? C3B SAE 600 A 1 HETATM 9 O O3B SAE . . . D 3 -22.254 26.492 -2.006 0.75 58.09 ? O3B SAE 600 A 1 HETATM 10 C C2B SAE . . . D 3 -21.543 28.874 -2.963 0.75 58.63 ? C2B SAE 600 A 1 HETATM 11 O O2B SAE . . . D 3 -22.44 28.847 -4.09 0.75 58.39 ? O2B SAE 600 A 1 HETATM 12 C C1B SAE . . . D 3 -21.962 29.824 -1.821 0.75 58.38 ? C1B SAE 600 A 1 HETATM 13 N N9A SAE . . . D 3 -22.012 31.279 -2.239 0.75 57.46 ? N9A SAE 600 A 1 HETATM 14 C C8A SAE . . . D 3 -20.946 32.127 -2.332 0.75 57.37 ? C8A SAE 600 A 1 HETATM 15 N N7A SAE . . . D 3 -21.328 33.372 -2.691 0.75 57.61 ? N7A SAE 600 A 1 HETATM 16 C C5A SAE . . . D 3 -22.668 33.289 -2.775 0.75 56.94 ? C5A SAE 600 A 1 HETATM 17 C C6A SAE . . . D 3 -23.576 34.337 -3.081 0.75 56.73 ? C6A SAE 600 A 1 HETATM 18 N N6A SAE . . . D 3 -23.212 35.602 -3.245 0.75 55.97 ? N6A SAE 600 A 1 HETATM 19 N N1A SAE . . . D 3 -24.892 33.979 -3.225 0.75 56.8 ? N1A SAE 600 A 1 HETATM 20 C C2A SAE . . . D 3 -25.345 32.718 -3.031 0.75 56.93 ? C2A SAE 600 A 1 HETATM 21 N N3A SAE . . . D 3 -24.468 31.732 -2.718 0.75 57.24 ? N3A SAE 600 A 1 HETATM 22 C C4A SAE . . . D 3 -23.126 31.978 -2.566 0.75 57.5 ? C4A SAE 600 A 1 HETATM 23 O O3 SAE . . . D 3 -16.587 27.883 0.088 0.75 75.74 ? O3 SAE 600 A 1 HETATM 24 P PN SAE . . . D 3 -17.061 26.395 0.468 0.75 80.25 ? PN SAE 600 A 1 HETATM 25 O O1N SAE . . . D 3 -17.279 25.705 -0.839 0.75 80.57 ? O1N SAE 600 A 1 HETATM 26 O O2N SAE . . . D 3 -18.217 26.481 1.392 0.75 81.37 ? O2N SAE 600 A 1 HETATM 27 O O5D SAE . . . D 3 -15.784 25.977 1.376 0.75 81.65 ? O5D SAE 600 A 1 HETATM 28 C C5D SAE . . . D 3 -15.73 26.52 2.726 0.75 85.07 ? C5D SAE 600 A 1 HETATM 29 C C4D SAE . . . D 3 -14.432 27.182 3.205 0.75 86.95 ? C4D SAE 600 A 1 HETATM 30 O O4D SAE . . . D 3 -13.46 26.17 3.493 0.75 88.91 ? O4D SAE 600 A 1 HETATM 31 C C3D SAE . . . D 3 -13.82 28.05 2.127 0.75 87.46 ? C3D SAE 600 A 1 HETATM 32 O O3D SAE . . . D 3 -14.326 29.39 2.184 0.75 88.1 ? O3D SAE 600 A 1 HETATM 33 C C2D SAE . . . D 3 -12.377 28.085 2.585 0.75 88.67 ? C2D SAE 600 A 1 HETATM 34 O O2D SAE . . . D 3 -12.205 29.114 3.574 0.75 88.52 ? O2D SAE 600 A 1 HETATM 35 C C1D SAE . . . D 3 -12.166 26.692 3.174 0.75 89.24 ? C1D SAE 600 A 1 HETATM 36 C C2N SAE . . . D 3 -11.582 25.626 2.276 0.75 92.07 ? C2N SAE 600 A 1 HETATM 37 N N3N SAE . . . D 3 -10.778 25.948 1.277 0.75 91.49 ? N3N SAE 600 A 1 HETATM 38 C C4N SAE . . . D 3 -10.436 24.84 0.631 0.75 91.06 ? C4N SAE 600 A 1 HETATM 39 C C5N SAE . . . D 3 -10.935 23.686 1.111 0.75 93.4 ? C5N SAE 600 A 1 HETATM 40 SE SE1N SAE . . . D 3 -11.946 23.948 2.468 0.75 96.12 ? SE1N SAE 600 A 1 HETATM 41 C C6N SAE . . . D 3 -9.524 24.942 -0.591 0.75 88.57 ? C6N SAE 600 A 1 HETATM 42 O O6N SAE . . . D 3 -9.594 24.136 -1.515 0.75 87.63 ? O6N SAE 600 A 1 HETATM 43 N N6N SAE . . . D 3 -8.667 25.945 -0.579 0.75 86.61 ? N6N SAE 600 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #