data_1B3O # _model_server_result.job_id Y8lZCtFjtMJjKbRCQELJ0Q _model_server_result.datetime_utc '2024-11-23 10:41:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":631}' # _entry.id 1B3O # _exptl.entry_id 1B3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.66 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-CHLOROPURINE RIBOSIDE,5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B3O _cell.length_a 142.26 _cell.length_b 142.26 _cell.length_c 174.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,V 1 1,2,3,4 B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,W 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 331 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 331 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C6 _struct_conn.ptnr2_label_comp_id CPR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CPR _struct_conn.ptnr2_auth_seq_id 631 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.774 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H13 Cl N4 O7 P 1' _chem_comp.formula_weight 367.66 _chem_comp.id CPR _chem_comp.mon_nstd_flag . _chem_comp.name "6-CHLOROPURINE RIBOSIDE, 5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CPR doub 70 n n P O2P CPR sing 71 n n P O3P CPR sing 72 n n P O5' CPR sing 73 n n O2P HOP2 CPR sing 74 n n O3P HOP3 CPR sing 75 n n O5' C5' CPR sing 76 n n C5' C4' CPR sing 77 n n C5' "H5'1" CPR sing 78 n n C5' "H5'2" CPR sing 79 n n C4' O4' CPR sing 80 n n C4' C3' CPR sing 81 n n C4' H4' CPR sing 82 n n O4' C1' CPR sing 83 n n C3' O3' CPR sing 84 n n C3' C2' CPR sing 85 n n C3' H3' CPR sing 86 n n O3' HO3' CPR sing 87 n n C2' O2' CPR sing 88 n n C2' C1' CPR sing 89 n n C2' H2' CPR sing 90 n n O2' HO2' CPR sing 91 n n C1' N9 CPR sing 92 n n C1' H1' CPR sing 93 n n N9 C8 CPR sing 94 n y N9 C4 CPR sing 95 n y C8 N7 CPR doub 96 n y C8 H8 CPR sing 97 n n N7 C5 CPR sing 98 n y C5 C6 CPR sing 99 n y C5 C4 CPR doub 100 n y C6 CL CPR sing 101 n n C6 N1 CPR doub 102 n y N1 C2 CPR sing 103 n y N1 HN1 CPR sing 104 n n C2 N3 CPR doub 105 n y C2 H2 CPR sing 106 n n N3 C4 CPR sing 107 n y # _atom_sites.entry_id 1B3O _atom_sites.fract_transf_matrix[1][1] 0.007029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CPR A 1 631 631 CPR IMP . D 3 SAE A 1 600 600 SAE SAD . E 2 CPR B 1 631 631 CPR IMP . F 3 SAE B 1 601 600 SAE SAD . G 4 UNX B 1 632 1 UNX ALA . H 4 UNX B 1 633 2 UNX ALA . I 4 UNX B 1 634 3 UNX ALA . J 4 UNX B 1 635 4 UNX ALA . K 4 UNX B 1 636 5 UNX ALA . L 4 UNX B 1 637 6 UNX ALA . M 4 UNX B 1 638 7 UNX ALA . N 4 UNX B 1 639 8 UNX ALA . O 4 UNX B 1 640 9 UNX ALA . P 4 UNX B 1 641 10 UNX ALA . Q 4 UNX B 1 642 1 UNX ALA . R 4 UNX B 1 643 2 UNX ALA . S 4 UNX B 1 644 3 UNX ALA . T 4 UNX B 1 645 4 UNX ALA . U 4 UNX B 1 646 5 UNX ALA . V 5 HOH A 1 632 2 HOH HOH . V 5 HOH A 2 633 3 HOH HOH . V 5 HOH A 3 634 4 HOH HOH . V 5 HOH A 4 635 10 HOH HOH . V 5 HOH A 5 636 14 HOH HOH . V 5 HOH A 6 637 15 HOH HOH . V 5 HOH A 7 638 18 HOH HOH . V 5 HOH A 8 639 24 HOH HOH . V 5 HOH A 9 640 25 HOH HOH . V 5 HOH A 10 641 27 HOH HOH . V 5 HOH A 11 642 30 HOH HOH . W 5 HOH B 1 647 1 HOH HOH . W 5 HOH B 2 648 5 HOH HOH . W 5 HOH B 3 649 6 HOH HOH . W 5 HOH B 4 650 7 HOH HOH . W 5 HOH B 5 651 8 HOH HOH . W 5 HOH B 6 652 9 HOH HOH . W 5 HOH B 7 653 11 HOH HOH . W 5 HOH B 8 654 12 HOH HOH . W 5 HOH B 9 655 13 HOH HOH . W 5 HOH B 10 656 16 HOH HOH . W 5 HOH B 11 657 17 HOH HOH . W 5 HOH B 12 658 19 HOH HOH . W 5 HOH B 13 659 20 HOH HOH . W 5 HOH B 14 660 21 HOH HOH . W 5 HOH B 15 661 22 HOH HOH . W 5 HOH B 16 662 23 HOH HOH . W 5 HOH B 17 663 26 HOH HOH . W 5 HOH B 18 664 28 HOH HOH . W 5 HOH B 19 665 29 HOH HOH . W 5 HOH B 20 666 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CPR . . . C 2 -1.785 21.989 4.236 1 35.92 ? P CPR 631 A 1 HETATM 2 O O1P CPR . . . C 2 -1.939 22.04 5.703 1 30.89 ? O1P CPR 631 A 1 HETATM 3 O O2P CPR . . . C 2 -1.805 20.646 3.594 1 34.54 ? O2P CPR 631 A 1 HETATM 4 O O3P CPR . . . C 2 -0.728 22.912 3.712 1 37.52 ? O3P CPR 631 A 1 HETATM 5 O O5' CPR . . . C 2 -3.196 22.499 3.664 1 33.58 ? O5' CPR 631 A 1 HETATM 6 C C5' CPR . . . C 2 -3.307 23.877 3.287 1 33.78 ? C5' CPR 631 A 1 HETATM 7 C C4' CPR . . . C 2 -4.568 24.099 2.532 1 32.96 ? C4' CPR 631 A 1 HETATM 8 O O4' CPR . . . C 2 -5.548 23.303 3.187 1 34.41 ? O4' CPR 631 A 1 HETATM 9 C C3' CPR . . . C 2 -5.087 25.497 2.73 1 32.59 ? C3' CPR 631 A 1 HETATM 10 O O3' CPR . . . C 2 -4.457 26.582 2.096 1 30.05 ? O3' CPR 631 A 1 HETATM 11 C C2' CPR . . . C 2 -6.524 25.237 2.305 1 35.72 ? C2' CPR 631 A 1 HETATM 12 O O2' CPR . . . C 2 -6.684 25.297 0.88 1 36.15 ? O2' CPR 631 A 1 HETATM 13 C C1' CPR . . . C 2 -6.845 23.843 2.869 1 38.89 ? C1' CPR 631 A 1 HETATM 14 N N9 CPR . . . C 2 -7.789 23.723 4.046 1 45.07 ? N9 CPR 631 A 1 HETATM 15 C C8 CPR . . . C 2 -7.722 24.395 5.221 1 46.88 ? C8 CPR 631 A 1 HETATM 16 N N7 CPR . . . C 2 -8.649 24.03 6.092 1 51.78 ? N7 CPR 631 A 1 HETATM 17 C C5 CPR . . . C 2 -9.385 23.168 5.414 1 53.05 ? C5 CPR 631 A 1 HETATM 18 C C6 CPR . . . C 2 -10.565 22.591 5.952 1 55.02 ? C6 CPR 631 A 1 HETATM 19 N N1 CPR . . . C 2 -11.022 21.608 5.136 1 57.35 ? N1 CPR 631 A 1 HETATM 20 C C2 CPR . . . C 2 -10.481 21.161 3.975 1 57.51 ? C2 CPR 631 A 1 HETATM 21 N N3 CPR . . . C 2 -9.422 21.862 3.469 1 55.02 ? N3 CPR 631 A 1 HETATM 22 C C4 CPR . . . C 2 -8.816 22.865 4.177 1 50.32 ? C4 CPR 631 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #