data_1B42 # _model_server_result.job_id DsCxQ4iHYlbcLIFzQTOEJQ _model_server_result.datetime_utc '2025-02-27 16:31:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1B42 # _exptl.entry_id 1B42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.3 _cell.angle_gamma 90 _cell.entry_id 1B42 _cell.length_a 84.907 _cell.length_b 66.997 _cell.length_c 79.741 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 297 n n N HN1 SAH sing 298 n n N HN2 SAH sing 299 n n CA CB SAH sing 300 n n CA C SAH sing 301 n n CA HA SAH sing 302 n n CB CG SAH sing 303 n n CB HB1 SAH sing 304 n n CB HB2 SAH sing 305 n n CG SD SAH sing 306 n n CG HG1 SAH sing 307 n n CG HG2 SAH sing 308 n n SD C5' SAH sing 309 n n C O SAH doub 310 n n C OXT SAH sing 311 n n OXT HXT SAH sing 312 n n C5' C4' SAH sing 313 n n C5' "H5'1" SAH sing 314 n n C5' "H5'2" SAH sing 315 n n C4' O4' SAH sing 316 n n C4' C3' SAH sing 317 n n C4' H4' SAH sing 318 n n O4' C1' SAH sing 319 n n C3' O3' SAH sing 320 n n C3' C2' SAH sing 321 n n C3' H3' SAH sing 322 n n O3' HO3' SAH sing 323 n n C2' O2' SAH sing 324 n n C2' C1' SAH sing 325 n n C2' H2' SAH sing 326 n n O2' HO2' SAH sing 327 n n C1' N9 SAH sing 328 n n C1' H1' SAH sing 329 n n N9 C8 SAH sing 330 n y N9 C4 SAH sing 331 n y C8 N7 SAH doub 332 n y C8 H8 SAH sing 333 n n N7 C5 SAH sing 334 n y C5 C6 SAH sing 335 n y C5 C4 SAH doub 336 n y C6 N6 SAH sing 337 n n C6 N1 SAH doub 338 n y N6 HN61 SAH sing 339 n n N6 HN62 SAH sing 340 n n N1 C2 SAH sing 341 n y C2 N3 SAH doub 342 n y C2 H2 SAH sing 343 n n N3 C4 SAH sing 344 n y # _atom_sites.entry_id 1B42 _atom_sites.fract_transf_matrix[1][1] 0.011778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006079 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 400 400 SAH SAH . C 3 M1A A 1 600 600 M1A M1A . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 64 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 69 HOH HOH . D 4 HOH A 70 670 70 HOH HOH . D 4 HOH A 71 671 71 HOH HOH . D 4 HOH A 72 672 72 HOH HOH . D 4 HOH A 73 673 73 HOH HOH . D 4 HOH A 74 674 74 HOH HOH . D 4 HOH A 75 675 75 HOH HOH . D 4 HOH A 76 676 76 HOH HOH . D 4 HOH A 77 677 77 HOH HOH . D 4 HOH A 78 678 78 HOH HOH . D 4 HOH A 79 679 79 HOH HOH . D 4 HOH A 80 680 80 HOH HOH . D 4 HOH A 81 681 81 HOH HOH . D 4 HOH A 82 682 82 HOH HOH . D 4 HOH A 83 683 83 HOH HOH . D 4 HOH A 84 684 84 HOH HOH . D 4 HOH A 85 685 85 HOH HOH . D 4 HOH A 86 686 86 HOH HOH . D 4 HOH A 87 687 87 HOH HOH . D 4 HOH A 88 688 88 HOH HOH . D 4 HOH A 89 689 89 HOH HOH . D 4 HOH A 90 690 90 HOH HOH . D 4 HOH A 91 691 91 HOH HOH . D 4 HOH A 92 692 92 HOH HOH . D 4 HOH A 93 693 93 HOH HOH . D 4 HOH A 94 694 94 HOH HOH . D 4 HOH A 95 695 95 HOH HOH . D 4 HOH A 96 696 96 HOH HOH . D 4 HOH A 97 697 97 HOH HOH . D 4 HOH A 98 698 98 HOH HOH . D 4 HOH A 99 699 99 HOH HOH . D 4 HOH A 100 700 100 HOH HOH . D 4 HOH A 101 701 101 HOH HOH . D 4 HOH A 102 702 102 HOH HOH . D 4 HOH A 103 703 103 HOH HOH . D 4 HOH A 104 704 104 HOH HOH . D 4 HOH A 105 705 105 HOH HOH . D 4 HOH A 106 706 106 HOH HOH . D 4 HOH A 107 707 107 HOH HOH . D 4 HOH A 108 708 108 HOH HOH . D 4 HOH A 109 709 109 HOH HOH . D 4 HOH A 110 710 110 HOH HOH . D 4 HOH A 111 711 111 HOH HOH . D 4 HOH A 112 712 112 HOH HOH . D 4 HOH A 113 713 113 HOH HOH . D 4 HOH A 114 714 114 HOH HOH . D 4 HOH A 115 715 115 HOH HOH . D 4 HOH A 116 716 116 HOH HOH . D 4 HOH A 117 717 117 HOH HOH . D 4 HOH A 118 718 118 HOH HOH . D 4 HOH A 119 719 119 HOH HOH . D 4 HOH A 120 720 120 HOH HOH . D 4 HOH A 121 721 121 HOH HOH . D 4 HOH A 122 722 122 HOH HOH . D 4 HOH A 123 723 123 HOH HOH . D 4 HOH A 124 724 124 HOH HOH . D 4 HOH A 125 725 125 HOH HOH . D 4 HOH A 126 726 126 HOH HOH . D 4 HOH A 127 727 127 HOH HOH . D 4 HOH A 128 728 128 HOH HOH . D 4 HOH A 129 729 129 HOH HOH . D 4 HOH A 130 730 130 HOH HOH . D 4 HOH A 131 731 131 HOH HOH . D 4 HOH A 132 732 132 HOH HOH . D 4 HOH A 133 733 133 HOH HOH . D 4 HOH A 134 734 134 HOH HOH . D 4 HOH A 135 735 135 HOH HOH . D 4 HOH A 136 736 136 HOH HOH . D 4 HOH A 137 737 137 HOH HOH . D 4 HOH A 138 738 138 HOH HOH . D 4 HOH A 139 739 139 HOH HOH . D 4 HOH A 140 740 140 HOH HOH . D 4 HOH A 141 741 141 HOH HOH . D 4 HOH A 142 742 142 HOH HOH . D 4 HOH A 143 743 143 HOH HOH . D 4 HOH A 144 744 144 HOH HOH . D 4 HOH A 145 745 145 HOH HOH . D 4 HOH A 146 746 146 HOH HOH . D 4 HOH A 147 747 147 HOH HOH . D 4 HOH A 148 748 148 HOH HOH . D 4 HOH A 149 749 149 HOH HOH . D 4 HOH A 150 750 150 HOH HOH . D 4 HOH A 151 751 151 HOH HOH . D 4 HOH A 152 752 152 HOH HOH . D 4 HOH A 153 753 153 HOH HOH . D 4 HOH A 154 754 154 HOH HOH . D 4 HOH A 155 755 155 HOH HOH . D 4 HOH A 156 756 156 HOH HOH . D 4 HOH A 157 757 157 HOH HOH . D 4 HOH A 158 758 158 HOH HOH . D 4 HOH A 159 759 159 HOH HOH . D 4 HOH A 160 760 160 HOH HOH . D 4 HOH A 161 761 161 HOH HOH . D 4 HOH A 162 762 162 HOH HOH . D 4 HOH A 163 763 163 HOH HOH . D 4 HOH A 164 764 164 HOH HOH . D 4 HOH A 165 765 165 HOH HOH . D 4 HOH A 166 766 166 HOH HOH . D 4 HOH A 167 767 167 HOH HOH . D 4 HOH A 168 768 168 HOH HOH . D 4 HOH A 169 769 169 HOH HOH . D 4 HOH A 170 770 170 HOH HOH . D 4 HOH A 171 771 171 HOH HOH . D 4 HOH A 172 772 172 HOH HOH . D 4 HOH A 173 773 173 HOH HOH . D 4 HOH A 174 774 174 HOH HOH . D 4 HOH A 175 775 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -4.134 12.915 24.077 1 15.79 ? N SAH 400 A 1 HETATM 2 C CA SAH . . . B 2 -4.242 11.913 25.135 1 13.18 ? CA SAH 400 A 1 HETATM 3 C CB SAH . . . B 2 -2.944 11.094 25.183 1 11.48 ? CB SAH 400 A 1 HETATM 4 C CG SAH . . . B 2 -2.621 10.344 23.889 1 6.64 ? CG SAH 400 A 1 HETATM 5 S SD SAH . . . B 2 -1.206 9.228 23.985 1 11.43 ? SD SAH 400 A 1 HETATM 6 C C SAH . . . B 2 -4.572 12.542 26.512 1 13.71 ? C SAH 400 A 1 HETATM 7 O O SAH . . . B 2 -5.054 13.695 26.55 1 11.71 ? O SAH 400 A 1 HETATM 8 O OXT SAH . . . B 2 -4.277 11.915 27.55 1 7.46 ? OXT SAH 400 A 1 HETATM 9 C C5' SAH . . . B 2 -1.237 8.571 22.293 1 7.54 ? C5' SAH 400 A 1 HETATM 10 C C4' SAH . . . B 2 -2.525 7.827 21.948 1 14.4 ? C4' SAH 400 A 1 HETATM 11 O O4' SAH . . . B 2 -2.563 7.678 20.483 1 11.93 ? O4' SAH 400 A 1 HETATM 12 C C3' SAH . . . B 2 -2.669 6.412 22.637 1 17.35 ? C3' SAH 400 A 1 HETATM 13 O O3' SAH . . . B 2 -3.827 6.346 23.488 1 16.89 ? O3' SAH 400 A 1 HETATM 14 C C2' SAH . . . B 2 -2.926 5.543 21.423 1 16.37 ? C2' SAH 400 A 1 HETATM 15 O O2' SAH . . . B 2 -3.915 4.457 21.621 1 17.85 ? O2' SAH 400 A 1 HETATM 16 C C1' SAH . . . B 2 -3.451 6.576 20.438 1 16.88 ? C1' SAH 400 A 1 HETATM 17 N N9 SAH . . . B 2 -3.443 6.115 19.106 1 20.07 ? N9 SAH 400 A 1 HETATM 18 C C8 SAH . . . B 2 -2.404 5.606 18.398 1 19.06 ? C8 SAH 400 A 1 HETATM 19 N N7 SAH . . . B 2 -2.712 5.376 17.147 1 21.95 ? N7 SAH 400 A 1 HETATM 20 C C5 SAH . . . B 2 -4.064 5.763 17.049 1 19.55 ? C5 SAH 400 A 1 HETATM 21 C C6 SAH . . . B 2 -4.985 5.733 16.007 1 17.23 ? C6 SAH 400 A 1 HETATM 22 N N6 SAH . . . B 2 -4.742 5.323 14.759 1 14.4 ? N6 SAH 400 A 1 HETATM 23 N N1 SAH . . . B 2 -6.184 6.127 16.305 1 14.91 ? N1 SAH 400 A 1 HETATM 24 C C2 SAH . . . B 2 -6.49 6.52 17.505 1 19.27 ? C2 SAH 400 A 1 HETATM 25 N N3 SAH . . . B 2 -5.739 6.599 18.547 1 19.67 ? N3 SAH 400 A 1 HETATM 26 C C4 SAH . . . B 2 -4.508 6.201 18.248 1 19.46 ? C4 SAH 400 A 1 HETATM 27 H HN1 SAH . . . B 2 -4.34 12.631 23.163 1 0 ? HN1 SAH 400 A 1 HETATM 28 H HO2' SAH . . . B 2 -3.782 3.882 20.868 1 0 ? HO2' SAH 400 A 1 HETATM 29 H HN61 SAH . . . B 2 -3.819 5.016 14.499 1 0 ? HN61 SAH 400 A 1 HETATM 30 H HN62 SAH . . . B 2 -5.454 5.304 14.041 1 0 ? HN62 SAH 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 84 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 75 _model_server_stats.element_count 30 #