data_1B48 # _model_server_result.job_id tM05lHUjY13xA_iUajmJ4Q _model_server_result.datetime_utc '2024-11-21 23:14:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":223}' # _entry.id 1B48 # _exptl.entry_id 1B48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-S-GLUTATHIONYL-5-PENTYL-TETRAHYDRO-FURAN-2-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B48 _cell.length_a 114.45 _cell.length_b 96.14 _cell.length_c 50.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H33 N3 O8 S' _chem_comp.formula_weight 463.546 _chem_comp.id HAG _chem_comp.mon_nstd_flag . _chem_comp.name 4-S-GLUTATHIONYL-5-PENTYL-TETRAHYDRO-FURAN-2-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GSHNA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CA1 HAG sing 152 n n C1 O11 HAG sing 153 n n C1 O12 HAG doub 154 n n C2 CA2 HAG sing 155 n n C2 O2 HAG doub 156 n n C2 N3 HAG sing 157 n n C3 CA3 HAG sing 158 n n C3 O31 HAG sing 159 n n C3 O32 HAG doub 160 n n N1 CA1 HAG sing 161 n n N1 HN11 HAG sing 162 n n N1 HN12 HAG sing 163 n n CA1 CB1 HAG sing 164 n n CA1 HCA1 HAG sing 165 n n O11 HO11 HAG sing 166 n n CB1 CG1 HAG sing 167 n n CB1 HB11 HAG sing 168 n n CB1 HB12 HAG sing 169 n n CG1 CD1 HAG sing 170 n n CG1 HG12 HAG sing 171 n n CG1 HG11 HAG sing 172 n n CD1 OE1 HAG doub 173 n n CD1 N2 HAG sing 174 n n N2 CA2 HAG sing 175 n n N2 HN21 HAG sing 176 n n CA2 CB2 HAG sing 177 n n CA2 HCA2 HAG sing 178 n n CB2 SG2 HAG sing 179 n n CB2 HB21 HAG sing 180 n n CB2 HB22 HAG sing 181 n n SG2 C41 HAG sing 182 n n N3 CA3 HAG sing 183 n n N3 HN31 HAG sing 184 n n CA3 HA31 HAG sing 185 n n CA3 HA32 HAG sing 186 n n O31 HO31 HAG sing 187 n n C41 C42 HAG sing 188 n n C41 C44 HAG sing 189 n n C41 HC41 HAG sing 190 n n C42 C43 HAG sing 191 n n C42 H421 HAG sing 192 n n C42 H422 HAG sing 193 n n O42 C43 HAG sing 194 n n O42 HO42 HAG sing 195 n n C43 O43 HAG sing 196 n n C43 HC43 HAG sing 197 n n O43 C44 HAG sing 198 n n C44 C45 HAG sing 199 n n C44 HC44 HAG sing 200 n n C45 C46 HAG sing 201 n n C45 H451 HAG sing 202 n n C45 H452 HAG sing 203 n n C46 C47 HAG sing 204 n n C46 H461 HAG sing 205 n n C46 H462 HAG sing 206 n n C47 C48 HAG sing 207 n n C47 H471 HAG sing 208 n n C47 H472 HAG sing 209 n n C48 C49 HAG sing 210 n n C48 H481 HAG sing 211 n n C48 H482 HAG sing 212 n n C49 H491 HAG sing 213 n n C49 H492 HAG sing 214 n n C49 H493 HAG sing 215 n n # _atom_sites.entry_id 1B48 _atom_sites.fract_transf_matrix[1][1] 0.008737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HAG A 1 223 223 HAG HAG . D 3 GSH B 1 223 223 GSH GTT . E 4 HOH A 1 301 301 HOH HOH . E 4 HOH A 2 302 302 HOH HOH . E 4 HOH A 3 303 303 HOH HOH . E 4 HOH A 4 304 304 HOH HOH . E 4 HOH A 5 305 305 HOH HOH . E 4 HOH A 6 315 315 HOH HOH . E 4 HOH A 7 318 318 HOH HOH . E 4 HOH A 8 323 323 HOH HOH . E 4 HOH A 9 324 324 HOH HOH . E 4 HOH A 10 326 326 HOH HOH . E 4 HOH A 11 328 328 HOH HOH . E 4 HOH A 12 329 329 HOH HOH . E 4 HOH A 13 330 330 HOH HOH . E 4 HOH A 14 332 332 HOH HOH . E 4 HOH A 15 335 335 HOH HOH . E 4 HOH A 16 336 336 HOH HOH . E 4 HOH A 17 338 338 HOH HOH . E 4 HOH A 18 339 339 HOH HOH . F 4 HOH B 1 306 306 HOH HOH . F 4 HOH B 2 307 307 HOH HOH . F 4 HOH B 3 308 308 HOH HOH . F 4 HOH B 4 309 309 HOH HOH . F 4 HOH B 5 310 310 HOH HOH . F 4 HOH B 6 311 311 HOH HOH . F 4 HOH B 7 312 312 HOH HOH . F 4 HOH B 8 313 313 HOH HOH . F 4 HOH B 9 314 314 HOH HOH . F 4 HOH B 10 316 316 HOH HOH . F 4 HOH B 11 317 317 HOH HOH . F 4 HOH B 12 319 319 HOH HOH . F 4 HOH B 13 320 320 HOH HOH . F 4 HOH B 14 321 321 HOH HOH . F 4 HOH B 15 322 322 HOH HOH . F 4 HOH B 16 325 325 HOH HOH . F 4 HOH B 17 327 327 HOH HOH . F 4 HOH B 18 331 331 HOH HOH . F 4 HOH B 19 333 333 HOH HOH . F 4 HOH B 20 334 334 HOH HOH . F 4 HOH B 21 337 337 HOH HOH . F 4 HOH B 22 340 340 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HAG . . . C 2 34.358 16.888 30.163 1 37.69 ? C1 HAG 223 A 1 HETATM 2 C C2 HAG . . . C 2 32.489 17.479 36.098 1 43.97 ? C2 HAG 223 A 1 HETATM 3 C C3 HAG . . . C 2 35.257 17.588 38.329 1 56.18 ? C3 HAG 223 A 1 HETATM 4 N N1 HAG . . . C 2 35.146 19.051 29.072 1 26.66 ? N1 HAG 223 A 1 HETATM 5 C CA1 HAG . . . C 2 35.205 18.142 30.325 1 32.49 ? CA1 HAG 223 A 1 HETATM 6 O O11 HAG . . . C 2 33.892 16.093 31.061 1 36.47 ? O11 HAG 223 A 1 HETATM 7 O O12 HAG . . . C 2 33.966 16.404 28.898 1 31.6 ? O12 HAG 223 A 1 HETATM 8 C CB1 HAG . . . C 2 34.733 19.124 31.463 1 30.68 ? CB1 HAG 223 A 1 HETATM 9 C CG1 HAG . . . C 2 35.16 18.489 32.77 1 34.19 ? CG1 HAG 223 A 1 HETATM 10 C CD1 HAG . . . C 2 34.43 19.024 33.962 1 37.9 ? CD1 HAG 223 A 1 HETATM 11 O OE1 HAG . . . C 2 34.914 19.752 34.883 1 42.55 ? OE1 HAG 223 A 1 HETATM 12 N N2 HAG . . . C 2 33.103 18.67 34.045 1 42.89 ? N2 HAG 223 A 1 HETATM 13 C CA2 HAG . . . C 2 32.473 18.882 35.386 1 46.49 ? CA2 HAG 223 A 1 HETATM 14 O O2 HAG . . . C 2 32.034 16.62 35.344 1 39.46 ? O2 HAG 223 A 1 HETATM 15 C CB2 HAG . . . C 2 31.02 19.406 35.206 1 49.22 ? CB2 HAG 223 A 1 HETATM 16 S SG2 HAG . . . C 2 30.801 20.57 36.534 1 55.99 ? SG2 HAG 223 A 1 HETATM 17 N N3 HAG . . . C 2 32.995 17.515 37.346 1 45.26 ? N3 HAG 223 A 1 HETATM 18 C CA3 HAG . . . C 2 34.108 18.41 37.754 1 51.81 ? CA3 HAG 223 A 1 HETATM 19 O O31 HAG . . . C 2 35.268 17.258 39.573 1 54.86 ? O31 HAG 223 A 1 HETATM 20 O O32 HAG . . . C 2 36.217 17.257 37.451 1 54.71 ? O32 HAG 223 A 1 HETATM 21 C C41 HAG . . . C 2 31.253 22.301 36.208 1 56.36 ? C41 HAG 223 A 1 HETATM 22 C C42 HAG . . . C 2 32.653 22.586 35.773 1 53.83 ? C42 HAG 223 A 1 HETATM 23 O O42 HAG . . . C 2 33.504 23.586 33.581 1 55.24 ? O42 HAG 223 A 1 HETATM 24 C C43 HAG . . . C 2 32.59 22.593 34.223 1 55.25 ? C43 HAG 223 A 1 HETATM 25 O O43 HAG . . . C 2 31.237 22.917 33.902 1 58.11 ? O43 HAG 223 A 1 HETATM 26 C C44 HAG . . . C 2 30.32 22.781 35.055 1 57.65 ? C44 HAG 223 A 1 HETATM 27 C C45 HAG . . . C 2 29.738 24.187 35.414 1 58.68 ? C45 HAG 223 A 1 HETATM 28 C C46 HAG . . . C 2 28.769 24.763 34.305 1 60.02 ? C46 HAG 223 A 1 HETATM 29 C C47 HAG . . . C 2 27.867 23.898 33.366 1 61.8 ? C47 HAG 223 A 1 HETATM 30 C C48 HAG . . . C 2 27.081 22.749 34.002 1 60.6 ? C48 HAG 223 A 1 HETATM 31 C C49 HAG . . . C 2 26.551 22.847 35.407 1 61.79 ? C49 HAG 223 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #