data_1B4B # _model_server_result.job_id sNr1NbBShTPiAM5aoAzWaA _model_server_result.datetime_utc '2024-11-14 04:41:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1B4B # _exptl.entry_id 1B4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B4B _cell.length_a 82 _cell.length_b 82 _cell.length_c 67.2 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 82 82 33.6 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 45 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 123 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 50 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 128 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.985 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 1B4B _atom_sites.fract_transf_matrix[1][1] 0.012195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ARG A 1 1 1 ARG ARG . E 2 ARG B 1 1 1 ARG ARG . F 2 ARG B 1 150 1 ARG ARG . G 3 HOH A 1 150 2 HOH HOH . G 3 HOH A 2 151 8 HOH HOH . G 3 HOH A 3 152 9 HOH HOH . G 3 HOH A 4 153 18 HOH HOH . G 3 HOH A 5 154 19 HOH HOH . G 3 HOH A 6 155 21 HOH HOH . G 3 HOH A 7 156 22 HOH HOH . G 3 HOH A 8 157 23 HOH HOH . G 3 HOH A 9 158 28 HOH HOH . G 3 HOH A 10 159 31 HOH HOH . G 3 HOH A 11 160 32 HOH HOH . G 3 HOH A 12 161 37 HOH HOH . G 3 HOH A 13 162 40 HOH HOH . G 3 HOH A 14 163 43 HOH HOH . G 3 HOH A 15 164 44 HOH HOH . G 3 HOH A 16 165 47 HOH HOH . G 3 HOH A 17 166 51 HOH HOH . G 3 HOH A 18 167 52 HOH HOH . G 3 HOH A 19 168 56 HOH HOH . G 3 HOH A 20 169 59 HOH HOH . G 3 HOH A 21 170 62 HOH HOH . G 3 HOH A 22 171 65 HOH HOH . G 3 HOH A 23 172 66 HOH HOH . G 3 HOH A 24 173 78 HOH HOH . G 3 HOH A 25 174 84 HOH HOH . G 3 HOH A 26 175 91 HOH HOH . G 3 HOH A 27 176 93 HOH HOH . G 3 HOH A 28 177 98 HOH HOH . G 3 HOH A 29 178 103 HOH HOH . G 3 HOH A 30 179 104 HOH HOH . G 3 HOH A 31 180 105 HOH HOH . G 3 HOH A 32 181 108 HOH HOH . G 3 HOH A 33 182 113 HOH HOH . G 3 HOH A 34 183 115 HOH HOH . G 3 HOH A 35 184 116 HOH HOH . G 3 HOH A 36 185 121 HOH HOH . G 3 HOH A 37 186 124 HOH HOH . G 3 HOH A 38 187 128 HOH HOH . G 3 HOH A 39 188 129 HOH HOH . G 3 HOH A 40 189 130 HOH HOH . G 3 HOH A 41 190 131 HOH HOH . G 3 HOH A 42 191 139 HOH HOH . G 3 HOH A 43 192 141 HOH HOH . G 3 HOH A 44 193 144 HOH HOH . G 3 HOH A 45 194 146 HOH HOH . G 3 HOH A 46 195 148 HOH HOH . G 3 HOH A 47 196 151 HOH HOH . G 3 HOH A 48 197 154 HOH HOH . G 3 HOH A 49 198 157 HOH HOH . G 3 HOH A 50 199 158 HOH HOH . G 3 HOH A 51 200 163 HOH HOH . G 3 HOH A 52 201 167 HOH HOH . G 3 HOH A 53 202 168 HOH HOH . G 3 HOH A 54 203 173 HOH HOH . G 3 HOH A 55 204 178 HOH HOH . G 3 HOH A 56 205 179 HOH HOH . G 3 HOH A 57 206 182 HOH HOH . G 3 HOH A 58 207 183 HOH HOH . G 3 HOH A 59 208 194 HOH HOH . G 3 HOH A 60 209 195 HOH HOH . G 3 HOH A 61 210 196 HOH HOH . G 3 HOH A 62 211 197 HOH HOH . G 3 HOH A 63 212 199 HOH HOH . H 3 HOH B 1 151 5 HOH HOH . H 3 HOH B 2 152 6 HOH HOH . H 3 HOH B 3 153 10 HOH HOH . H 3 HOH B 4 154 11 HOH HOH . H 3 HOH B 5 155 12 HOH HOH . H 3 HOH B 6 156 14 HOH HOH . H 3 HOH B 7 157 15 HOH HOH . H 3 HOH B 8 158 17 HOH HOH . H 3 HOH B 9 159 20 HOH HOH . H 3 HOH B 10 160 24 HOH HOH . H 3 HOH B 11 161 25 HOH HOH . H 3 HOH B 12 162 27 HOH HOH . H 3 HOH B 13 163 33 HOH HOH . H 3 HOH B 14 164 34 HOH HOH . H 3 HOH B 15 165 38 HOH HOH . H 3 HOH B 16 166 39 HOH HOH . H 3 HOH B 17 167 41 HOH HOH . H 3 HOH B 18 168 42 HOH HOH . H 3 HOH B 19 169 48 HOH HOH . H 3 HOH B 20 170 50 HOH HOH . H 3 HOH B 21 171 53 HOH HOH . H 3 HOH B 22 172 54 HOH HOH . H 3 HOH B 23 173 55 HOH HOH . H 3 HOH B 24 174 57 HOH HOH . H 3 HOH B 25 175 61 HOH HOH . H 3 HOH B 26 176 64 HOH HOH . H 3 HOH B 27 177 67 HOH HOH . H 3 HOH B 28 178 68 HOH HOH . H 3 HOH B 29 179 69 HOH HOH . H 3 HOH B 30 180 70 HOH HOH . H 3 HOH B 31 181 76 HOH HOH . H 3 HOH B 32 182 80 HOH HOH . H 3 HOH B 33 183 81 HOH HOH . H 3 HOH B 34 184 85 HOH HOH . H 3 HOH B 35 185 86 HOH HOH . H 3 HOH B 36 186 87 HOH HOH . H 3 HOH B 37 187 88 HOH HOH . H 3 HOH B 38 188 94 HOH HOH . H 3 HOH B 39 189 95 HOH HOH . H 3 HOH B 40 190 99 HOH HOH . H 3 HOH B 41 191 100 HOH HOH . H 3 HOH B 42 192 101 HOH HOH . H 3 HOH B 43 193 107 HOH HOH . H 3 HOH B 44 194 114 HOH HOH . H 3 HOH B 45 195 117 HOH HOH . H 3 HOH B 46 196 120 HOH HOH . H 3 HOH B 47 197 125 HOH HOH . H 3 HOH B 48 198 126 HOH HOH . H 3 HOH B 49 199 127 HOH HOH . H 3 HOH B 50 200 132 HOH HOH . H 3 HOH B 51 201 133 HOH HOH . H 3 HOH B 52 202 136 HOH HOH . H 3 HOH B 53 203 137 HOH HOH . H 3 HOH B 54 204 140 HOH HOH . H 3 HOH B 55 205 145 HOH HOH . H 3 HOH B 56 206 150 HOH HOH . H 3 HOH B 57 207 152 HOH HOH . H 3 HOH B 58 208 156 HOH HOH . H 3 HOH B 59 209 159 HOH HOH . H 3 HOH B 60 210 160 HOH HOH . H 3 HOH B 61 211 161 HOH HOH . H 3 HOH B 62 212 162 HOH HOH . H 3 HOH B 63 213 165 HOH HOH . H 3 HOH B 64 214 170 HOH HOH . H 3 HOH B 65 215 171 HOH HOH . H 3 HOH B 66 216 172 HOH HOH . H 3 HOH B 67 217 174 HOH HOH . H 3 HOH B 68 218 175 HOH HOH . H 3 HOH B 69 219 177 HOH HOH . H 3 HOH B 70 220 180 HOH HOH . H 3 HOH B 71 221 181 HOH HOH . H 3 HOH B 72 222 184 HOH HOH . H 3 HOH B 73 223 186 HOH HOH . H 3 HOH B 74 224 188 HOH HOH . H 3 HOH B 75 225 192 HOH HOH . I 3 HOH C 1 150 1 HOH HOH . I 3 HOH C 2 151 3 HOH HOH . I 3 HOH C 3 152 4 HOH HOH . I 3 HOH C 4 153 7 HOH HOH . I 3 HOH C 5 154 13 HOH HOH . I 3 HOH C 6 155 16 HOH HOH . I 3 HOH C 7 156 26 HOH HOH . I 3 HOH C 8 157 29 HOH HOH . I 3 HOH C 9 158 30 HOH HOH . I 3 HOH C 10 159 35 HOH HOH . I 3 HOH C 11 160 36 HOH HOH . I 3 HOH C 12 161 45 HOH HOH . I 3 HOH C 13 162 46 HOH HOH . I 3 HOH C 14 163 49 HOH HOH . I 3 HOH C 15 164 58 HOH HOH . I 3 HOH C 16 165 60 HOH HOH . I 3 HOH C 17 166 63 HOH HOH . I 3 HOH C 18 167 71 HOH HOH . I 3 HOH C 19 168 72 HOH HOH . I 3 HOH C 20 169 73 HOH HOH . I 3 HOH C 21 170 74 HOH HOH . I 3 HOH C 22 171 75 HOH HOH . I 3 HOH C 23 172 77 HOH HOH . I 3 HOH C 24 173 79 HOH HOH . I 3 HOH C 25 174 82 HOH HOH . I 3 HOH C 26 175 83 HOH HOH . I 3 HOH C 27 176 89 HOH HOH . I 3 HOH C 28 177 90 HOH HOH . I 3 HOH C 29 178 92 HOH HOH . I 3 HOH C 30 179 96 HOH HOH . I 3 HOH C 31 180 97 HOH HOH . I 3 HOH C 32 181 102 HOH HOH . I 3 HOH C 33 182 106 HOH HOH . I 3 HOH C 34 183 109 HOH HOH . I 3 HOH C 35 184 110 HOH HOH . I 3 HOH C 36 185 111 HOH HOH . I 3 HOH C 37 186 112 HOH HOH . I 3 HOH C 38 187 118 HOH HOH . I 3 HOH C 39 188 119 HOH HOH . I 3 HOH C 40 189 122 HOH HOH . I 3 HOH C 41 190 123 HOH HOH . I 3 HOH C 42 191 134 HOH HOH . I 3 HOH C 43 192 135 HOH HOH . I 3 HOH C 44 193 138 HOH HOH . I 3 HOH C 45 194 142 HOH HOH . I 3 HOH C 46 195 143 HOH HOH . I 3 HOH C 47 196 147 HOH HOH . I 3 HOH C 48 197 149 HOH HOH . I 3 HOH C 49 198 153 HOH HOH . I 3 HOH C 50 199 155 HOH HOH . I 3 HOH C 51 200 164 HOH HOH . I 3 HOH C 52 201 166 HOH HOH . I 3 HOH C 53 202 169 HOH HOH . I 3 HOH C 54 203 176 HOH HOH . I 3 HOH C 55 204 185 HOH HOH . I 3 HOH C 56 205 187 HOH HOH . I 3 HOH C 57 206 189 HOH HOH . I 3 HOH C 58 207 190 HOH HOH . I 3 HOH C 59 208 191 HOH HOH . I 3 HOH C 60 209 193 HOH HOH . I 3 HOH C 61 210 198 HOH HOH . I 3 HOH C 62 211 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . D 2 32.04 37.984 9.656 1 15.76 ? N ARG 1 A 1 HETATM 2 C CA ARG . . . D 2 32.436 38.384 11.036 1 16.22 ? CA ARG 1 A 1 HETATM 3 C C ARG . . . D 2 31.866 39.755 11.376 1 18.84 ? C ARG 1 A 1 HETATM 4 O O ARG . . . D 2 31.812 40.089 12.579 1 20.18 ? O ARG 1 A 1 HETATM 5 C CB ARG . . . D 2 33.958 38.42 11.152 1 18.31 ? CB ARG 1 A 1 HETATM 6 C CG ARG . . . D 2 34.639 39.378 10.179 1 20.27 ? CG ARG 1 A 1 HETATM 7 C CD ARG . . . D 2 36.142 39.299 10.34 1 20.37 ? CD ARG 1 A 1 HETATM 8 N NE ARG . . . D 2 36.88 40.149 9.411 1 21.73 ? NE ARG 1 A 1 HETATM 9 C CZ ARG . . . D 2 37.385 41.338 9.725 1 23.69 ? CZ ARG 1 A 1 HETATM 10 N NH1 ARG . . . D 2 37.227 41.819 10.95 1 20.45 ? NH1 ARG 1 A 1 HETATM 11 N NH2 ARG . . . D 2 38.084 42.028 8.828 1 25.32 ? NH2 ARG 1 A 1 HETATM 12 O OXT ARG . . . D 2 31.485 40.482 10.433 1 19.36 ? OXT ARG 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #